Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr13

Orthogroup ID

OG0005183

Physical Location & Seq

Genomic Coordinates Reverse (-)

6432865 .. 6435251

Gene Structure 2387 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD13G1090700.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1083 bp

ATGAATGGTATTAAAGATGATGTTTTGAGTTGTGGAATTGACAAGCTAACAAATGGAGCCGGCGGATGCTCTGACTACACGAAAGTAGATGTTTTCGACAATATGAGGAACACATTGGAAAATTTAGATGAAGATTGTAAGCTTTTGGGCACGGGCGAAAAGTCCGAGCAGGATCAGGCTTGTAGTGCATGTCTGAGAAGGTGGGAAGAGATTGTAGCATCGTTGGAAAATGAGTCGTCGTCGTCAAAACTTGAAGCTGATACTTGTGGTTTTGCAGTTTTGGTAACTTTAACAAGCAGGAGGATTGATGATGAGAATTGGGTTTCAGCACTGTATGAATGCCTTGGGGATCAGAAACTTTCAGAAGGAATTACAGCAATAATTCTCATTGCAACATGGACCGTATGCAGAAAAAGGACTCATGAGAGTATTTTAGCTCGAAAAGATGCATCAAATGATTTACTTTCTGAAGAATCGGTCAGCCTTAAGATATCAAGCAAGGAAATCTATTCAGCGACCGACAATCTAAGCGCAGTCAACTTCATTGGCCAAGGCGGAGCTGAAGAATATTTCCTGGTCTATGAACTGTGTCAAAATGGGAACCTTCCGGAGTGGCTATTGGGTAAAGATAAAAATCTACCATGGAGAACGAGACTTGAGCTTGCGATTGACAGCGCTAGGGGTCTTTGGTTTCTGCACACTTATCCGGGAGGCTGCATTGTTCACCGTGATATCAAGCCAACAAACATTCTCATTGATGAAAACTTTCGATCAAAACTGTCAGACTTCGGGTTATCTAAAGTTATGGACTTGGGACAGTCTTATGTGAGCTCAGAAGTGAGAGGCACATTCGGTTATGTTGATCCTGAGTACCGAAAGAATCACCACGTAAATGCTTCAGGAGATGTCTACAGTTTTGGAATAGTTTTTCTGCAACTTATCTCAGGGCGCAGGGTTATCAATCTAAACTCAAACAAACCAATGCCTCTTAGTAAAATGGCAAGGGCTCTCACAACAGGAGGTGATGTAACAGAATTCGCAGATCCCAAACTTAACGGGGAGTATTCCGGTAGAAGCCTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pkinase

Protein Analysis

361

Amino Acids

39.9

Weight (kDa)

4.99

Isoelectric Point (pI)

34.53

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PK_Tyr_Ser-Thr	PF07714	118 - 316	3.1e-24	Protein tyrosine and serine/threonine kinase
Pkinase	PF00069	150 - 326	9.4e-26	Protein kinase domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005183)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g27000 FvH4_4g34600
malus_domestica	MD09G1035700.v1.1 MD13G1090700.v1.1 MD13G1091000.v1.1
prunus_persica	Prupe.1G254900_v2.0.a1 Prupe.3G282300_v2.0.a1
pyrus_communis	pycom16g07810
rosa_chinensis	RchiOBHm_Chr2g0170941 RchiOBHm_Chr4g0443971
rosa_laevigata	RLG00000005871 RLG00000021994
rosa_multiflora	Rmu_sc0010716.1_g000005 Rmu_sc0025148.1_g000001 Rmu_sc0027702.1_g000001 Rmu_sc0029481.1_g000001
rosa_roxburghii	Rroxscaffold_2G00080960 Rroxscaffold_5G00384520
rosa_rugosa	Rorug02G0552500 Rorug04G0348600
rosa_samantha	Rh2AG625300 Rh2BG636100 Rh2CG604600 Rh2DG647700 Rh4AG409300 Rh4BG420400 Rh4CG434400 Rh4DG415400
rosa_wichuraiana	Rw2G051790 Rw4G035160

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	909
AccIII	TCCGGA	1 cut(s)	607
AciI	CCGC	2 cut(s)	63, 555
AclWI	GGATC	4 cut(s)	180, 357, 857, 1037
AcoI	YGGCCR	1 cut(s)	547
AcsI	RAATTY	2 cut(s)	121, 1034
AcuI	CTGAAG	3 cut(s)	489, 582, 882
AfaI	GTAC	1 cut(s)	872
AfeI	AGCGCT	1 cut(s)	676
AflII	CTTAAG	1 cut(s)	485
AgsI	TTSAA	1 cut(s)	254
AjnI	CCWGG	1 cut(s)	573
AluBI	AGCT	7 cut(s)	46, 142, 257, 437, 560, 661, 831
AluI	AGCT	7 cut(s)	46, 142, 257, 437, 560, 661, 831
Alw21I	GWGCWC	1 cut(s)	833
Alw26I	GTCTC	1 cut(s)	646
AlwI	GGATC	4 cut(s)	180, 357, 857, 1037
Aor13HI	TCCGGA	1 cut(s)	607
Aor51HI	AGCGCT	1 cut(s)	676
AoxI	GGCC	1 cut(s)	547
ApeKI	GCWGC	1 cut(s)	714
ApoI	RAATTY	2 cut(s)	121, 1034
Asp700I	GAANNNNTTC	1 cut(s)	765
AspLEI	GCGC	3 cut(s)	533, 677, 951
AspS9I	GGNCC	1 cut(s)	399
AsuC2I	CCSGG	1 cut(s)	708
AsuHPI	GGTGA	3 cut(s)	716, 875, 1034
AvaII	GGWCC	1 cut(s)	399
BaeGI	GKGCMC	1 cut(s)	152
BalI	TGGCCA	1 cut(s)	549
BanII	GRGCYC	2 cut(s)	833, 1009
Bbv12I	GWGCWC	1 cut(s)	833
BbvI	GCAGC	1 cut(s)	701
BciT130I	CCWGG	1 cut(s)	575
BcnI	CCSGG	1 cut(s)	708
BcoDI	GTCTC	1 cut(s)	646
BfaI	CTAG	1 cut(s)	678
BfmI	CTRYAG	1 cut(s)	910
BfoI	RGCGCY	1 cut(s)	678
BfrI	CTTAAG	1 cut(s)	485
BisI	GCNGC	1 cut(s)	715
BlsI	GCNGC	1 cut(s)	716
Bme1390I	CCNGG	2 cut(s)	575, 708
Bme18I	GGWCC	1 cut(s)	399
BmgT120I	GGNCC	1 cut(s)	399
BmiI	GGNNCC	2 cut(s)	58, 602
BmrFI	CCNGG	2 cut(s)	575, 708
BmsI	GCATC	4 cut(s)	56, 227, 436, 458
BpuEI	CTTGAG	1 cut(s)	677
BpuMI	CCSGG	1 cut(s)	708
BsaAI	YACGTR	1 cut(s)	889
BsaBI	GATNNNNATC	1 cut(s)	633
BsaJI	CCNNGG	3 cut(s)	343, 550, 641
BsaWI	WCCGGW	2 cut(s)	607, 1067
BsaXI	ACNNNNNCTCC	2 cut(s)	1011, 1041
Bse118I	RCCGGY	1 cut(s)	59
Bse3DI	GCAATG	1 cut(s)	387
Bse8I	GATNNNNATC	1 cut(s)	633
BseAI	TCCGGA	1 cut(s)	607
BseBI	CCWGG	1 cut(s)	575
BseDI	CCNNGG	3 cut(s)	343, 550, 641
BseGI	GGATG	1 cut(s)	71
BseJI	GATNNNNATC	1 cut(s)	633
BseMI	GCAATG	1 cut(s)	387
BseMII	CTCAG	4 cut(s)	185, 846, 858, 957
BseSI	GKGCMC	1 cut(s)	152
BseXI	GCAGC	1 cut(s)	701
BsgI	GTGCAG	1 cut(s)	680
Bsh1285I	CGRYCG	1 cut(s)	519
BshFI	GGCC	1 cut(s)	549
BsiEI	CGRYCG	1 cut(s)	519
BsiHKAI	GWGCWC	1 cut(s)	833
BsiSI	CCGG	4 cut(s)	60, 608, 707, 1068
BslFI	GGGAC	1 cut(s)	828
BsmAI	GTCTC	1 cut(s)	646
BsmFI	GGGAC	1 cut(s)	828
BsmI	GAATGC	1 cut(s)	344
BsnI	GGCC	1 cut(s)	549
Bsp1286I	GDGCHC	3 cut(s)	152, 833, 1009
Bsp13I	TCCGGA	1 cut(s)	607
Bsp143I	GATC	5 cut(s)	172, 349, 770, 862, 1042
Bsp19I	CCATGG	1 cut(s)	641
BspACI	CCGC	2 cut(s)	63, 555
BspANI	GGCC	1 cut(s)	549
BspCNI	CTCAG	4 cut(s)	186, 845, 859, 956
BspEI	TCCGGA	1 cut(s)	607
BspHI	TCATGA	1 cut(s)	421
BspLI	GGNNCC	2 cut(s)	58, 602
BspPI	GGATC	4 cut(s)	180, 357, 857, 1037
BspTI	CTTAAG	1 cut(s)	485
BsrDI	GCAATG	1 cut(s)	387
BsrFI	RCCGGY	1 cut(s)	59
BssAI	RCCGGY	1 cut(s)	59
BssECI	CCNNGG	3 cut(s)	343, 550, 641
BssMI	GATC	5 cut(s)	172, 349, 770, 862, 1042
BssT1I	CCWWGG	3 cut(s)	343, 550, 641
Bst2UI	CCWGG	1 cut(s)	575
Bst4CI	ACNGT	7 cut(s)	333, 403, 588, 728, 780, 819, 914
Bst6I	CTCTTC	1 cut(s)	201
BstAFI	CTTAAG	1 cut(s)	485
BstBAI	YACGTR	1 cut(s)	889
BstC8I	GCNNGC	2 cut(s)	61, 663
BstDEI	CTNAG	6 cut(s)	194, 527, 832, 867, 943, 989
BstDSI	CCRYGG	1 cut(s)	641
BstF5I	GGATG	1 cut(s)	71
BstH2I	RGCGCY	1 cut(s)	678
BstHHI	GCGC	3 cut(s)	533, 677, 951
BstKTI	GATC	5 cut(s)	175, 352, 773, 865, 1045
BstMAI	GTCTC	1 cut(s)	646
BstMBI	GATC	5 cut(s)	172, 349, 770, 862, 1042
BstMCI	CGRYCG	1 cut(s)	519
BstMWI	GCNNNNNNNGC	1 cut(s)	185
BstNI	CCWGG	1 cut(s)	575
BstNSI	RCATGY	1 cut(s)	192
BstSCI	CCNGG	2 cut(s)	573, 706
BstSFI	CTRYAG	1 cut(s)	910
BstSLI	GKGCMC	1 cut(s)	152
BstV1I	GCAGC	1 cut(s)	701
BstX2I	RGATCY	1 cut(s)	1042
BstYI	RGATCY	1 cut(s)	1042
BsuRI	GGCC	1 cut(s)	549
BtgI	CCRYGG	1 cut(s)	641
BtsCI	GGATG	1 cut(s)	71
BtsIMutI	CAGTG	1 cut(s)	329
Cac8I	GCNNGC	2 cut(s)	61, 663
CciI	TCATGA	1 cut(s)	421
CfoI	GCGC	3 cut(s)	533, 677, 951
Cfr10I	RCCGGY	1 cut(s)	59
Cfr13I	GGNCC	1 cut(s)	399
Csp6I	GTAC	1 cut(s)	871
CviAII	CATG	4 cut(s)	189, 396, 422, 642
CviQI	GTAC	1 cut(s)	871
DdeI	CTNAG	6 cut(s)	194, 527, 832, 867, 943, 989
DpnI	GATC	5 cut(s)	174, 351, 772, 864, 1044
DpnII	GATC	5 cut(s)	172, 349, 770, 862, 1042
EaeI	YGGCCR	1 cut(s)	547
Eam1104I	CTCTTC	1 cut(s)	201
EarI	CTCTTC	1 cut(s)	201
EciI	GGCGGA	2 cut(s)	78, 570
Ecl136II	GAGCTC	1 cut(s)	831
Eco130I	CCWWGG	3 cut(s)	343, 550, 641
Eco24I	GRGCYC	2 cut(s)	833, 1009
Eco32I	GATATC	2 cut(s)	492, 733
Eco47I	GGWCC	1 cut(s)	399
Eco47III	AGCGCT	1 cut(s)	676
Eco53kI	GAGCTC	1 cut(s)	831
Eco57I	CTGAAG	3 cut(s)	489, 582, 882
EcoICRI	GAGCTC	1 cut(s)	831
EcoRI	GAATTC	1 cut(s)	1034
EcoRII	CCWGG	1 cut(s)	573
EcoRV	GATATC	2 cut(s)	492, 733
EcoT14I	CCWWGG	3 cut(s)	343, 550, 641
EcoT22I	ATGCAT	1 cut(s)	451
EcoT38I	GRGCYC	2 cut(s)	833, 1009
ErhI	CCWWGG	3 cut(s)	343, 550, 641
FaeI	CATG	4 cut(s)	192, 399, 425, 645
FaqI	GGGAC	1 cut(s)	828
FatI	CATG	4 cut(s)	188, 395, 421, 641
FblI	GTMKAC	1 cut(s)	909
Fnu4HI	GCNGC	1 cut(s)	715
FokI	GGATG	1 cut(s)	78
FriOI	GRGCYC	2 cut(s)	833, 1009
Fsp4HI	GCNGC	1 cut(s)	715
FspBI	CTAG	1 cut(s)	678
GlaI	GCGC	3 cut(s)	532, 676, 950
GluI	GCNGC	1 cut(s)	715
HaeII	RGCGCY	1 cut(s)	678
HaeIII	GGCC	1 cut(s)	549
HapII	CCGG	4 cut(s)	60, 608, 707, 1068
HhaI	GCGC	3 cut(s)	533, 677, 951
Hin1II	CATG	4 cut(s)	192, 399, 425, 645
Hin6I	GCGC	3 cut(s)	531, 675, 949
HinP1I	GCGC	3 cut(s)	531, 675, 949
HincII	GTYRAC	1 cut(s)	538
HindII	GTYRAC	1 cut(s)	538
HindIII	AAGCTT	1 cut(s)	140
HinfI	GANTC	4 cut(s)	233, 418, 473, 880
HpaII	CCGG	4 cut(s)	60, 608, 707, 1068
HphI	GGTGA	3 cut(s)	716, 875, 1034
Hpy166II	GTNNAC	3 cut(s)	538, 724, 910
Hpy188I	TCNGA	8 cut(s)	73, 166, 195, 354, 364, 469, 784, 835
Hpy188III	TCNNGA	4 cut(s)	422, 608, 866, 900
Hpy8I	GTNNAC	3 cut(s)	538, 724, 910
Hpy99I	CGWCG	2 cut(s)	241, 244
HpyAV	CCTTC	3 cut(s)	192, 359, 614
HpyCH4III	ACNGT	7 cut(s)	333, 403, 588, 728, 780, 819, 914
HpyCH4IV	ACGT	1 cut(s)	888
HpyCH4V	TGCA	8 cut(s)	188, 275, 392, 408, 449, 697, 717, 934
HpyF10VI	GCNNNNNNNGC	1 cut(s)	185
HpyF3I	CTNAG	6 cut(s)	194, 527, 832, 867, 943, 989
HpySE526I	ACGT	1 cut(s)	888
Hsp92II	CATG	4 cut(s)	192, 399, 425, 645
HspAI	GCGC	3 cut(s)	531, 675, 949
Kpn2I	TCCGGA	1 cut(s)	607
KroI	GCCGGC	1 cut(s)	59
KroNI	GCCGGC	1 cut(s)	61
Kzo9I	GATC	5 cut(s)	172, 349, 770, 862, 1042
LmnI	GCTCC	2 cut(s)	56, 557
Lsp1109I	GCAGC	1 cut(s)	701
LweI	GCATC	4 cut(s)	56, 227, 436, 458
MaeI	CTAG	1 cut(s)	678
MaeII	ACGT	1 cut(s)	888
MaeIII	GTNAC	2 cut(s)	283, 1027
MalI	GATC	5 cut(s)	174, 351, 772, 864, 1044
MboI	GATC	5 cut(s)	172, 349, 770, 862, 1042
MboII	GAAGA	4 cut(s)	143, 218, 482, 575
MflI	RGATCY	1 cut(s)	1042
MhlI	GDGCHC	3 cut(s)	152, 833, 1009
MlsI	TGGCCA	1 cut(s)	549
MluCI	AATT	6 cut(s)	36, 121, 316, 369, 381, 1034
MluNI	TGGCCA	1 cut(s)	549
MlyI	GAGTC	2 cut(s)	242, 412
MmeI	TCCRAC	1 cut(s)	204
MnlI	CCTC	6 cut(s)	99, 294, 704, 836, 996, 1013
Mox20I	TGGCCA	1 cut(s)	549
Mph1103I	ATGCAT	1 cut(s)	451
MroI	TCCGGA	1 cut(s)	607
MroNI	GCCGGC	1 cut(s)	59
MroXI	GAANNNNTTC	1 cut(s)	765
MscI	TGGCCA	1 cut(s)	549
MseI	TTAA	4 cut(s)	12, 290, 486, 1053
MslI	CAYNNNNRTG	1 cut(s)	891
Msp20I	TGGCCA	1 cut(s)	549
MspCI	CTTAAG	1 cut(s)	485
MspI	CCGG	4 cut(s)	60, 608, 707, 1068
MspR9I	CCNGG	2 cut(s)	575, 708
Mva1269I	GAATGC	1 cut(s)	344
MvaI	CCWGG	1 cut(s)	575
MwoI	GCNNNNNNNGC	1 cut(s)	185
NaeI	GCCGGC	1 cut(s)	61
NciI	CCSGG	1 cut(s)	708
NcoI	CCATGG	1 cut(s)	641
NdeII	GATC	5 cut(s)	172, 349, 770, 862, 1042
NgoMIV	GCCGGC	1 cut(s)	59
NlaIII	CATG	4 cut(s)	192, 399, 425, 645
NlaIV	GGNNCC	2 cut(s)	58, 602
NsiI	ATGCAT	1 cut(s)	451
NspI	RCATGY	1 cut(s)	192
PagI	TCATGA	1 cut(s)	421
PctI	GAATGC	1 cut(s)	344
PdiI	GCCGGC	1 cut(s)	61
PdmI	GAANNNNTTC	1 cut(s)	765
PfeI	GAWTC	2 cut(s)	473, 880
PfoI	TCCNGGA	1 cut(s)	706
PkrI	GCNGC	1 cut(s)	716
PleI	GAGTC	2 cut(s)	241, 412
PpsI	GAGTC	2 cut(s)	241, 412
Ppu21I	YACGTR	1 cut(s)	889
Psp124BI	GAGCTC	1 cut(s)	833
Psp6I	CCWGG	1 cut(s)	573
PspGI	CCWGG	1 cut(s)	573
PspN4I	GGNNCC	2 cut(s)	58, 602
PspPI	GGNCC	1 cut(s)	399
PsuI	RGATCY	1 cut(s)	1042
RsaI	GTAC	1 cut(s)	872
RsaNI	GTAC	1 cut(s)	871
RseI	CAYNNNNRTG	1 cut(s)	891
SacI	GAGCTC	1 cut(s)	833
SaqAI	TTAA	4 cut(s)	12, 290, 486, 1053
SatI	GCNGC	1 cut(s)	715
Sau3AI	GATC	5 cut(s)	172, 349, 770, 862, 1042
Sau96I	GGNCC	1 cut(s)	399
SchI	GAGTC	2 cut(s)	242, 412
ScrFI	CCNGG	2 cut(s)	575, 708
SduI	GDGCHC	3 cut(s)	152, 833, 1009
SfaNI	GCATC	4 cut(s)	56, 227, 436, 458
SfcI	CTRYAG	1 cut(s)	910
SinI	GGWCC	1 cut(s)	399
SmiMI	CAYNNNNRTG	1 cut(s)	891
SmlI	CTYRAG	2 cut(s)	485, 656
SmoI	CTYRAG	2 cut(s)	485, 656
Sse9I	AATT	6 cut(s)	36, 121, 316, 369, 381, 1034
SsiI	CCGC	2 cut(s)	63, 555
SspI	AATATT	1 cut(s)	569
SspMI	CTAG	1 cut(s)	678
SstI	GAGCTC	1 cut(s)	833
StyD4I	CCNGG	2 cut(s)	573, 706
StyI	CCWWGG	3 cut(s)	343, 550, 641
TaaI	ACNGT	7 cut(s)	333, 403, 588, 728, 780, 819, 914
TaiI	ACGT	1 cut(s)	891
TaqI	TCGA	3 cut(s)	96, 439, 769
TaqII	GACCGA	2 cut(s)	466, 533
TasI	AATT	6 cut(s)	36, 121, 316, 369, 381, 1034
TfiI	GAWTC	2 cut(s)	473, 880
Tru1I	TTAA	4 cut(s)	12, 290, 486, 1053
Tru9I	TTAA	4 cut(s)	12, 290, 486, 1053
TscAI	CASTG	1 cut(s)	336
TseI	GCWGC	1 cut(s)	714
TspDTI	ATGAA	6 cut(s)	17, 144, 351, 532, 597, 774
TspRI	CASTG	1 cut(s)	336
Vha464I	CTTAAG	1 cut(s)	485
VpaK11BI	GGWCC	1 cut(s)	399
XapI	RAATTY	2 cut(s)	121, 1034
XceI	RCATGY	1 cut(s)	192
XmiI	GTMKAC	1 cut(s)	909
XmnI	GAANNNNTTC	1 cut(s)	765
XspI	CTAG	1 cut(s)	678
Zsp2I	ATGCAT	1 cut(s)	451

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.