Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0029481.1

Orthogroup ID

OG0005183

Physical Location & Seq

Genomic Coordinates Forward (+)

1202 .. 1966

Gene Structure 765 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0029481.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 582 bp

atgattacaggaaaagatagaagtctaccatggattcagagacttgagattgcaattgatagtgcaaggggtctttggtttcttcacacttttccacaaggctgcattgttcaccgtgatgtcaagccaacaaacatactcatcactgccaactttcaagcaaaactgtccgactttgggttatctaaagttatggacgtggggcagtcctatgtgagctccgaagtgagaggaacatttggttatgttgatcctgagtaccgaaagaatcaccatgtaaatgcttcgggagatgtctacagtttcgggatagttcttctgcaacttatctcagggcgcagggttatcaatctgaattccaagacaccaatgtctcttaagaagatagccaggggtctcacaaaaggcggtgatgttatggagtttgctgatcccaaacttaacggggagtactcggttgcagcctttgaaattatagtcaaactagctttgtcatgcacaggactaaagcaacaaagaccacgcatggaggaggtggtatcaagactagaaaaggcactacatatctccacacagatgtag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004675 GO:0004888 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0007166 GO:0007167 GO:0007178 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019199 GO:0019538 GO:0023052 GO:0036211 GO:0038023 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0060089 GO:0065007 GO:0071704 GO:0071944 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pkinase Pkinase_Tyr

Protein Analysis

193

Amino Acids

21.57

Weight (kDa)

9.51

Isoelectric Point (pI)

30.67

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005183)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g27000 FvH4_4g34600
malus_domestica	MD09G1035700.v1.1 MD13G1090700.v1.1 MD13G1091000.v1.1
prunus_persica	Prupe.1G254900_v2.0.a1 Prupe.3G282300_v2.0.a1
pyrus_communis	pycom16g07810
rosa_chinensis	RchiOBHm_Chr2g0170941 RchiOBHm_Chr4g0443971
rosa_laevigata	RLG00000005871 RLG00000021994
rosa_multiflora	Rmu_sc0010716.1_g000005 Rmu_sc0025148.1_g000001 Rmu_sc0027702.1_g000001 Rmu_sc0029481.1_g000001
rosa_roxburghii	Rroxscaffold_2G00080960 Rroxscaffold_5G00384520
rosa_rugosa	Rorug02G0552500 Rorug04G0348600
rosa_samantha	Rh2AG625300 Rh2BG636100 Rh2CG604600 Rh2DG647700 Rh4AG409300 Rh4BG420400 Rh4CG434400 Rh4DG415400
rosa_wichuraiana	Rw2G051790 Rw4G035160

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	370
AccI	GTMKAC	2 cut(s)	25, 297
AciI	CCGC	1 cut(s)	408
AclWI	GGATC	2 cut(s)	245, 425
AcsI	RAATTY	1 cut(s)	355
AfaI	GTAC	2 cut(s)	260, 452
AfiI	CCNNNNNNNGG	1 cut(s)	177
AflII	CTTAAG	1 cut(s)	377
AgsI	TTSAA	2 cut(s)	158, 470
AjiI	CACGTC	1 cut(s)	199
AjnI	CCWGG	1 cut(s)	389
AluBI	AGCT	2 cut(s)	219, 488
AluI	AGCT	2 cut(s)	219, 488
Alw21I	GWGCWC	1 cut(s)	221
Alw26I	GTCTC	3 cut(s)	34, 378, 401
AlwI	GGATC	2 cut(s)	245, 425
ApeKI	GCWGC	2 cut(s)	102, 461
ApoI	RAATTY	1 cut(s)	355
AspLEI	GCGC	1 cut(s)	339
AsuHPI	GGTGA	3 cut(s)	104, 263, 422
BanII	GRGCYC	1 cut(s)	221
Bbv12I	GWGCWC	1 cut(s)	221
BbvI	GCAGC	2 cut(s)	89, 473
BciT130I	CCWGG	1 cut(s)	391
BcoDI	GTCTC	3 cut(s)	34, 378, 401
BfaI	CTAG	2 cut(s)	485, 548
BfmI	CTRYAG	1 cut(s)	298
BfrI	CTTAAG	1 cut(s)	377
BisI	GCNGC	2 cut(s)	103, 462
BlsI	GCNGC	2 cut(s)	104, 463
BmcAI	AGTACT	1 cut(s)	452
Bme1390I	CCNGG	1 cut(s)	391
BmgBI	CACGTC	1 cut(s)	199
BmrFI	CCNGG	1 cut(s)	391
BpuEI	CTTGAG	1 cut(s)	65
BsaI	GGTCTC	1 cut(s)	401
BsaJI	CCNNGG	2 cut(s)	29, 390
Bsc4I	CCNNNNNNNGG	1 cut(s)	177
BseBI	CCWGG	1 cut(s)	391
BseDI	CCNNGG	2 cut(s)	29, 390
BseLI	CCNNNNNNNGG	1 cut(s)	177
BseMII	CTCAG	2 cut(s)	246, 345
BseRI	GAGGAG	1 cut(s)	545
BseXI	GCAGC	2 cut(s)	89, 473
BsiHKAI	GWGCWC	1 cut(s)	221
BslI	CCNNNNNNNGG	1 cut(s)	177
BsmAI	GTCTC	3 cut(s)	34, 378, 401
Bso31I	GGTCTC	1 cut(s)	401
Bsp1286I	GDGCHC	1 cut(s)	221
Bsp143I	GATC	2 cut(s)	250, 430
Bsp19I	CCATGG	1 cut(s)	29
BspACI	CCGC	1 cut(s)	408
BspCNI	CTCAG	2 cut(s)	247, 344
BspPI	GGATC	2 cut(s)	245, 425
BspTI	CTTAAG	1 cut(s)	377
BspTNI	GGTCTC	1 cut(s)	401
BssECI	CCNNGG	2 cut(s)	29, 390
BssMI	GATC	2 cut(s)	250, 430
BssT1I	CCWWGG	1 cut(s)	29
Bst2UI	CCWGG	1 cut(s)	391
Bst4CI	ACNGT	3 cut(s)	116, 168, 302
BstAFI	CTTAAG	1 cut(s)	377
BstDEI	CTNAG	2 cut(s)	255, 331
BstDSI	CCRYGG	1 cut(s)	29
BstHHI	GCGC	1 cut(s)	339
BstKTI	GATC	2 cut(s)	253, 433
BstMAI	GTCTC	3 cut(s)	34, 378, 401
BstMBI	GATC	2 cut(s)	250, 430
BstNI	CCWGG	1 cut(s)	391
BstSCI	CCNGG	1 cut(s)	389
BstSFI	CTRYAG	1 cut(s)	298
BstV1I	GCAGC	2 cut(s)	89, 473
BtgI	CCRYGG	1 cut(s)	29
BtrI	CACGTC	1 cut(s)	199
BtsI	GCAGTG	1 cut(s)	144
BtsIMutI	CAGTG	1 cut(s)	144
CfoI	GCGC	1 cut(s)	339
Csp6I	GTAC	2 cut(s)	259, 451
CviAII	CATG	4 cut(s)	30, 275, 495, 526
CviJI	RGCY	6 cut(s)	102, 127, 219, 389, 464, 488
CviKI_1	RGCY	6 cut(s)	102, 127, 219, 389, 464, 488
CviQI	GTAC	2 cut(s)	259, 451
DdeI	CTNAG	2 cut(s)	255, 331
DpnI	GATC	2 cut(s)	252, 432
DpnII	GATC	2 cut(s)	250, 430
DrdI	GACNNNNNNGTC	1 cut(s)	370
DseDI	GACNNNNNNGTC	1 cut(s)	370
Ecl136II	GAGCTC	1 cut(s)	219
Eco130I	CCWWGG	1 cut(s)	29
Eco24I	GRGCYC	1 cut(s)	221
Eco31I	GGTCTC	1 cut(s)	401
Eco53kI	GAGCTC	1 cut(s)	219
EcoICRI	GAGCTC	1 cut(s)	219
EcoRI	GAATTC	1 cut(s)	355
EcoRII	CCWGG	1 cut(s)	389
EcoT14I	CCWWGG	1 cut(s)	29
EcoT38I	GRGCYC	1 cut(s)	221
ErhI	CCWWGG	1 cut(s)	29
FaeI	CATG	4 cut(s)	33, 278, 498, 529
FatI	CATG	4 cut(s)	29, 274, 494, 525
FblI	GTMKAC	2 cut(s)	25, 297
Fnu4HI	GCNGC	2 cut(s)	103, 462
FriOI	GRGCYC	1 cut(s)	221
Fsp4HI	GCNGC	2 cut(s)	103, 462
FspBI	CTAG	2 cut(s)	485, 548
GlaI	GCGC	1 cut(s)	338
GluI	GCNGC	2 cut(s)	103, 462
HhaI	GCGC	1 cut(s)	339
Hin1II	CATG	4 cut(s)	33, 278, 498, 529
Hin6I	GCGC	1 cut(s)	337
HinP1I	GCGC	1 cut(s)	337
HinfI	GANTC	2 cut(s)	34, 268
HphI	GGTGA	3 cut(s)	104, 263, 422
Hpy166II	GTNNAC	3 cut(s)	26, 112, 298
Hpy188I	TCNGA	4 cut(s)	39, 172, 223, 354
Hpy188III	TCNNGA	4 cut(s)	254, 288, 307, 543
Hpy8I	GTNNAC	3 cut(s)	26, 112, 298
HpyCH4III	ACNGT	3 cut(s)	116, 168, 302
HpyCH4IV	ACGT	1 cut(s)	198
HpyCH4V	TGCA	6 cut(s)	53, 65, 105, 322, 461, 498
HpyF3I	CTNAG	2 cut(s)	255, 331
HpySE526I	ACGT	1 cut(s)	198
Hsp92II	CATG	4 cut(s)	33, 278, 498, 529
HspAI	GCGC	1 cut(s)	337
Kzo9I	GATC	2 cut(s)	250, 430
LmnI	GCTCC	1 cut(s)	224
LpnPI	CCDG	6 cut(s)	267, 318, 325, 376, 403, 486
Lsp1109I	GCAGC	2 cut(s)	89, 473
MaeI	CTAG	2 cut(s)	485, 548
MaeII	ACGT	1 cut(s)	198
MalI	GATC	2 cut(s)	252, 432
MboI	GATC	2 cut(s)	250, 430
MboII	GAAGA	3 cut(s)	74, 308, 394
MfeI	CAATTG	1 cut(s)	54
MhlI	GDGCHC	1 cut(s)	221
MluCI	AATT	3 cut(s)	54, 355, 471
MmeI	TCCRAC	1 cut(s)	195
MnlI	CCTC	3 cut(s)	224, 523, 526
MseI	TTAA	2 cut(s)	378, 441
MslI	CAYNNNNRTG	3 cut(s)	117, 279, 575
MspCI	CTTAAG	1 cut(s)	377
MspR9I	CCNGG	1 cut(s)	391
MunI	CAATTG	1 cut(s)	54
MvaI	CCWGG	1 cut(s)	391
NcoI	CCATGG	1 cut(s)	29
NdeII	GATC	2 cut(s)	250, 430
NlaIII	CATG	4 cut(s)	33, 278, 498, 529
PfeI	GAWTC	2 cut(s)	34, 268
PkrI	GCNGC	2 cut(s)	104, 463
Psp124BI	GAGCTC	1 cut(s)	221
Psp6I	CCWGG	1 cut(s)	389
PspGI	CCWGG	1 cut(s)	389
RsaI	GTAC	2 cut(s)	260, 452
RsaNI	GTAC	2 cut(s)	259, 451
RseI	CAYNNNNRTG	3 cut(s)	117, 279, 575
SacI	GAGCTC	1 cut(s)	221
SaqAI	TTAA	2 cut(s)	378, 441
SatI	GCNGC	2 cut(s)	103, 462
Sau3AI	GATC	2 cut(s)	250, 430
ScaI	AGTACT	1 cut(s)	452
ScrFI	CCNGG	1 cut(s)	391
SduI	GDGCHC	1 cut(s)	221
SetI	ASST	4 cut(s)	201, 221, 490, 537
SfcI	CTRYAG	1 cut(s)	298
SmiMI	CAYNNNNRTG	3 cut(s)	117, 279, 575
SmlI	CTYRAG	2 cut(s)	44, 377
SmoI	CTYRAG	2 cut(s)	44, 377
Sse9I	AATT	3 cut(s)	54, 355, 471
SsiI	CCGC	1 cut(s)	408
SspMI	CTAG	2 cut(s)	485, 548
SstI	GAGCTC	1 cut(s)	221
StyD4I	CCNGG	1 cut(s)	389
StyI	CCWWGG	1 cut(s)	29
TaaI	ACNGT	3 cut(s)	116, 168, 302
TaiI	ACGT	1 cut(s)	201
TasI	AATT	3 cut(s)	54, 355, 471
TatI	WGTACW	1 cut(s)	450
TfiI	GAWTC	2 cut(s)	34, 268
Tru1I	TTAA	2 cut(s)	378, 441
Tru9I	TTAA	2 cut(s)	378, 441
TscAI	CASTG	1 cut(s)	151
TseI	GCWGC	2 cut(s)	102, 461
TspRI	CASTG	1 cut(s)	151
Vha464I	CTTAAG	1 cut(s)	377
XapI	RAATTY	1 cut(s)	355
XmiI	GTMKAC	2 cut(s)	25, 297
XspI	CTAG	2 cut(s)	485, 548
ZrmI	AGTACT	1 cut(s)	452

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.