MD09G1035700.v1.1

LRR receptor-like serine threonine-protein kinase At2g28960

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr09
Physical Location & Seq
Forward (+)
2181385 .. 2183782
2398 bp
Loading structure...
UTR
Exon/CDS
Intron
MD09G1035700.v1.1.491

Sequence Viewer

Length: 1485 bp
ATGGCGAAACAAGTTTTTGTTTATGCTACAATCTTCATACTGATCACCACCGCTGGCTTTGCAGCTGCTATGCCCTCTGAGTCGAACTGCAGCCTTCATTTTGATTTGGGATCATCCCCGTCTCCAAATTCAACTTGCGAAGAAGGGGACTGGGGAGGGTTTCTGCACAAAGACTGCTGCGCATCAGCGTTCAATGACTACCTCTACGCGTTGGGGCAGCGCGCGAATCAAACAGGGTTGATATACCTCGACTCTGCCGAGCAGGGGGTTTGCTTGGCTTCCATGAAAAATTTGCAGAAGGATGTTTTCGGCTGTGGGATTGAGAAGTTGACAAGTGGTGCCGGTGGCTGCTCTGACTTGTCTGTCGCTGAAGTTAGGAATAGATTGGGCGACAAGTTGAAAGGTTTGGAGAGCCAGTGTGGATTCCGGTTTTCTGATGGAAAAAACGGGCAGCTGTGCGGTTCTTGTGTGAAGAGTTGGGAAGACATAGGACCATTGCATTCATCGTCCCGGGATGCAGAATCTTTGGAGTTTCAAACTAATGTTTGCAGGTTCGCAGTGCTGGTGTCGTATACAAGCATTAAACTTGAAGATAAAGGGCATCTTCTTGCAGTTTATAGTTGCCTTGGGTCACAAGAAGGCTTCGCTGGAAAGGTGTATAAAGGCATACTATCAAACAATCAACGTGTAGCAGTTAAGCACATTATCAATGACGGAAATGTGGAGACATTTGCCCGAGAAGTTACGAGCTTATCGCACATCAGACACCCGAACCTTGTTACCTTGCTAGGTTATTGTGCAAACGAAGATGAATGCTTCCTTGTCTATGAGCTTTGTCCCAACGGAAACCTCTCAGAATGGATTTTCGGGAAAGATAGGAACCTGTCCTGGATCCACAGGCTTGAGATTGCAATTGATAGCGCTCGAGGTCTATCGTTCCTCCACACGTATCCAGAAGGCTGCATTGTCCATCGCGACATCAAGCCAACAAACATTCTCCTCGGGGAGAATTTCGAAGCAAAGCTATCAGACTTTGGACTCTCCAAGATTATTGAGCTGGGAGAAACCTATGTCAGTTCAGAAGTGAGAGGAACTTTCGGGTACGTTGACCCAGACTATAGGATCAACAACCACGTAAATTCATCAGGAGATGTCTACAGCTTTGGAATCGTACTTCTGCAGATCCTATCGGGGAAGAAGGTTATCAACATGAATCTGAACACTCCAATGCCATTAAATAAACAGGCAAAGGTCCTCAACCGAGATGGCAGCATCAATGAATTCGCCGATCCTAAACTTGACGGGGAATACTCAGAAGAAGCGTTTGATCTAACGCTTCAGCTGGCTCTCTCATGCACAGCACTCAAACAACAAAGACCGTCAATGCAGCAAATTGTTGTGAGACTACAAGAGGCGCATGACATATCAACGCATGTAAAGGCCTCTACTCCTGAAGATTCACCAGATGCTAGCTTCTCGTATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

495

Amino Acids

54.21

Weight (kDa)

5.3

Isoelectric Point (pI)

34.83

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
SPARK PF19160 26 - 169 3.3e-11 SPARK
Pkinase PF00069 213 - 466 5e-38 Protein kinase domain
PK_Tyr_Ser-Thr PF07714 213 - 410 4.4e-37 Protein tyrosine and serine/threonine kinase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 362
Acc16I TGCGCA 1 cut(s) 181
Acc36I ACCTGC 1 cut(s) 540
AccB1I GGYRCC 1 cut(s) 338
AccI GTMKAC 2 cut(s) 572, 1155
AccII CGCG 4 cut(s) 209, 222, 224, 975
AciI CCGC 2 cut(s) 51, 459
AclWI GGATC 6 cut(s) 118, 886, 899, 1130, 1177, 1283
AcsI RAATTY 5 cut(s) 127, 289, 1009, 1138, 1280
AcuI CTGAAG 3 cut(s) 390, 1322, 1473
AfaI GTAC 2 cut(s) 1103, 1173
AfeI AGCGCT 1 cut(s) 922
AfiI CCNNNNNNNGG 1 cut(s) 264
AflIII ACRYGT 3 cut(s) 207, 685, 945
AgsI TTSAA 5 cut(s) 132, 193, 400, 536, 590
AjnI CCWGG 1 cut(s) 887
AluBI AGCT 9 cut(s) 65, 454, 750, 832, 1024, 1057, 1161, 1342, 1473
AluI AGCT 9 cut(s) 65, 454, 750, 832, 1024, 1057, 1161, 1342, 1473
Alw26I GTCTC 3 cut(s) 126, 719, 1396
AlwI GGATC 6 cut(s) 118, 886, 899, 1130, 1177, 1283
Ama87I CYCGRG 4 cut(s) 510, 735, 924, 1001
Aor51HI AGCGCT 1 cut(s) 922
AoxI GGCC 1 cut(s) 1440
ApoI RAATTY 5 cut(s) 127, 289, 1009, 1138, 1280
AspLEI GCGC 5 cut(s) 182, 222, 224, 923, 1417
AspS9I GGNCC 2 cut(s) 491, 1252
AsuC2I CCSGG 2 cut(s) 511, 512
AsuHPI GGTGA 2 cut(s) 37, 1452
AsuII TTCGAA 1 cut(s) 1014
AsuNHI GCTAGC 1 cut(s) 1469
AvaI CYCGRG 4 cut(s) 510, 735, 924, 1001
AvaII GGWCC 2 cut(s) 491, 1252
BamHI GGATCC 1 cut(s) 891
BanI GGYRCC 1 cut(s) 338
BbsI GAAGAC 1 cut(s) 489
BccI CCATC 3 cut(s) 431, 978, 1259
BciT130I CCWGG 1 cut(s) 889
BciVI GTATCC 1 cut(s) 960
BclI TGATCA 1 cut(s) 42
BcnI CCSGG 2 cut(s) 511, 512
BcoDI GTCTC 3 cut(s) 126, 719, 1396
BfaI CTAG 2 cut(s) 788, 1470
BfmI CTRYAG 4 cut(s) 88, 1117, 1156, 1178
BfoI RGCGCY 1 cut(s) 924
BfuAI ACCTGC 1 cut(s) 540
BfuI GTATCC 1 cut(s) 960
Bme1390I CCNGG 3 cut(s) 511, 512, 889
Bme18I GGWCC 2 cut(s) 491, 1252
BmeT110I CYCGRG 4 cut(s) 510, 735, 924, 1001
BmgT120I GGNCC 2 cut(s) 491, 1252
BmiI GGNNCC 3 cut(s) 340, 881, 893
BmrFI CCNGG 3 cut(s) 511, 512, 889
BmrI ACTGGG 1 cut(s) 160
BmsI GCATC 5 cut(s) 191, 505, 610, 1281, 1456
BmtI GCTAGC 1 cut(s) 1473
BmuI ACTGGG 1 cut(s) 160
BpiI GAAGAC 1 cut(s) 489
Bpu14I TTCGAA 1 cut(s) 1014
BpuEI CTTGAG 1 cut(s) 923
BpuMI CCSGG 2 cut(s) 511, 512
BsaAI YACGTR 2 cut(s) 948, 1135
BsaJI CCNNGG 3 cut(s) 510, 625, 1000
BsaWI WCCGGW 1 cut(s) 426
BsaXI ACNNNNNCTCC 2 cut(s) 401, 431
Bsc4I CCNNNNNNNGG 1 cut(s) 264
Bse118I RCCGGY 1 cut(s) 341
Bse1I ACTGG 2 cut(s) 155, 415
Bse3DI GCAATG 1 cut(s) 494
BseBI CCWGG 1 cut(s) 889
BseDI CCNNGG 3 cut(s) 510, 625, 1000
BseGI GGATG 3 cut(s) 113, 307, 520
BseLI CCNNNNNNNGG 1 cut(s) 264
BseMI GCAATG 1 cut(s) 494
BseMII CTCAG 3 cut(s) 69, 867, 1326
BseNI ACTGG 2 cut(s) 155, 415
BsePI GCGCGC 1 cut(s) 220
BseRI GAGGAG 1 cut(s) 989
BseYI CCCAGC 1 cut(s) 1057
BsgI GTGCAG 1 cut(s) 149
Bsh1236I CGCG 4 cut(s) 209, 222, 224, 975
BshFI GGCC 1 cut(s) 1442
BshNI GGYRCC 1 cut(s) 338
BsiHKCI CYCGRG 4 cut(s) 510, 735, 924, 1001
BsiSI CCGG 3 cut(s) 342, 427, 511
BslFI GGGAC 3 cut(s) 161, 493, 822
BslI CCNNNNNNNGG 1 cut(s) 264
BsmAI GTCTC 3 cut(s) 126, 719, 1396
BsmBI CGTCTC 1 cut(s) 126
BsmFI GGGAC 3 cut(s) 161, 493, 822
BsmI GAATGC 2 cut(s) 499, 818
BsnI GGCC 1 cut(s) 1442
BsoBI CYCGRG 4 cut(s) 510, 735, 924, 1001
Bsp119I TTCGAA 1 cut(s) 1014
Bsp143I GATC 7 cut(s) 42, 110, 891, 1122, 1182, 1288, 1327
Bsp68I TCGCGA 1 cut(s) 975
BspACI CCGC 2 cut(s) 51, 459
BspANI GGCC 1 cut(s) 1442
BspCNI CTCAG 3 cut(s) 70, 866, 1325
BspFNI CGCG 4 cut(s) 209, 222, 224, 975
BspLI GGNNCC 3 cut(s) 340, 881, 893
BspMAI CTGCAG 2 cut(s) 92, 1182
BspMI ACCTGC 1 cut(s) 540
BspOI GCTAGC 1 cut(s) 1473
BspPI GGATC 6 cut(s) 118, 886, 899, 1130, 1177, 1283
BspT104I TTCGAA 1 cut(s) 1014
BspT107I GGYRCC 1 cut(s) 338
BsrDI GCAATG 1 cut(s) 494
BsrFI RCCGGY 1 cut(s) 341
BsrI ACTGG 2 cut(s) 155, 415
BssAI RCCGGY 1 cut(s) 341
BssECI CCNNGG 3 cut(s) 510, 625, 1000
BssHII GCGCGC 1 cut(s) 220
BssMI GATC 7 cut(s) 42, 110, 891, 1122, 1182, 1288, 1327
BssNAI GTATAC 1 cut(s) 573
BssT1I CCWWGG 1 cut(s) 625
Bst1107I GTATAC 1 cut(s) 573
Bst2UI CCWGG 1 cut(s) 889
Bst4CI ACNGT 1 cut(s) 1380
Bst6I CTCTTC 1 cut(s) 467
BstBAI YACGTR 2 cut(s) 948, 1135
BstBI TTCGAA 1 cut(s) 1014
BstC8I GCNNGC 4 cut(s) 55, 222, 1344, 1471
BstDEI CTNAG 3 cut(s) 78, 853, 1312
BstF5I GGATG 3 cut(s) 113, 307, 520
BstFNI CGCG 4 cut(s) 209, 222, 224, 975
BstH2I RGCGCY 1 cut(s) 924
BstHHI GCGC 5 cut(s) 182, 222, 224, 923, 1417
BstKTI GATC 7 cut(s) 45, 113, 894, 1125, 1185, 1291, 1330
BstMAI GTCTC 3 cut(s) 126, 719, 1396
BstMBI GATC 7 cut(s) 42, 110, 891, 1122, 1182, 1288, 1327
BstMWI GCNNNNNNNGC 1 cut(s) 59
BstNI CCWGG 1 cut(s) 889
BstNSI RCATGY 1 cut(s) 1436
BstSCI CCNGG 3 cut(s) 509, 510, 887
BstSFI CTRYAG 4 cut(s) 88, 1117, 1156, 1178
BstUI CGCG 4 cut(s) 209, 222, 224, 975
BstV2I GAAGAC 1 cut(s) 489
BstX2I RGATCY 2 cut(s) 891, 1182
BstYI RGATCY 2 cut(s) 891, 1182
BstZ17I GTATAC 1 cut(s) 573
BsuI GTATCC 1 cut(s) 960
BsuRI GGCC 1 cut(s) 1442
BtgZI GCGATG 1 cut(s) 956
BtsCI GGATG 3 cut(s) 113, 307, 520
BtsI GCAGTG 1 cut(s) 564
BtsIMutI CAGTG 2 cut(s) 422, 564
BtuMI TCGCGA 1 cut(s) 975
BveI ACCTGC 1 cut(s) 540
Cac8I GCNNGC 4 cut(s) 55, 222, 1344, 1471
CfoI GCGC 5 cut(s) 182, 222, 224, 923, 1417
Cfr10I RCCGGY 1 cut(s) 341
Cfr13I GGNCC 2 cut(s) 491, 1252
Cfr9I CCCGGG 1 cut(s) 510
Csp6I GTAC 2 cut(s) 1102, 1172
CviAII CATG 5 cut(s) 283, 1210, 1353, 1418, 1433
CviQI GTAC 2 cut(s) 1102, 1172
DdeI CTNAG 3 cut(s) 78, 853, 1312
DpnI GATC 7 cut(s) 44, 112, 893, 1124, 1184, 1290, 1329
DpnII GATC 7 cut(s) 42, 110, 891, 1122, 1182, 1288, 1327
DrdI GACNNNNNNGTC 1 cut(s) 362
DseDI GACNNNNNNGTC 1 cut(s) 362
Eam1104I CTCTTC 1 cut(s) 467
EarI CTCTTC 1 cut(s) 467
Eco130I CCWWGG 1 cut(s) 625
Eco147I AGGCCT 1 cut(s) 1442
Eco47I GGWCC 2 cut(s) 491, 1252
Eco47III AGCGCT 1 cut(s) 922
Eco57I CTGAAG 3 cut(s) 390, 1322, 1473
Eco88I CYCGRG 4 cut(s) 510, 735, 924, 1001
EcoO109I RGGNCCY 1 cut(s) 1252
EcoRI GAATTC 1 cut(s) 1280
EcoRII CCWGG 1 cut(s) 887
EcoT14I CCWWGG 1 cut(s) 625
ErhI CCWWGG 1 cut(s) 625
Esp3I CGTCTC 1 cut(s) 126
FaeI CATG 5 cut(s) 286, 1213, 1356, 1421, 1436
FalI AAGNNNNNCTT 2 cut(s) 588, 620
FaqI GGGAC 3 cut(s) 161, 493, 822
FatI CATG 5 cut(s) 282, 1209, 1352, 1417, 1432
FbaI TGATCA 1 cut(s) 42
FblI GTMKAC 2 cut(s) 572, 1155
FokI GGATG 3 cut(s) 100, 314, 527
FspBI CTAG 2 cut(s) 788, 1470
FspI TGCGCA 1 cut(s) 181
GlaI GCGC 5 cut(s) 181, 221, 223, 922, 1416
GsaI CCCAGC 1 cut(s) 1061
HaeII RGCGCY 1 cut(s) 924
HaeIII GGCC 1 cut(s) 1442
HapII CCGG 3 cut(s) 342, 427, 511
HhaI GCGC 5 cut(s) 182, 222, 224, 923, 1417
Hin1II CATG 5 cut(s) 286, 1213, 1356, 1421, 1436
Hin6I GCGC 5 cut(s) 180, 220, 222, 921, 1415
HinP1I GCGC 5 cut(s) 180, 220, 222, 921, 1415
HincII GTYRAC 2 cut(s) 330, 1108
HindII GTYRAC 2 cut(s) 330, 1108
HinfI GANTC 9 cut(s) 80, 226, 251, 423, 521, 1038, 1167, 1213, 1457
HpaII CCGG 3 cut(s) 342, 427, 511
HphI GGTGA 2 cut(s) 37, 1452
Hpy166II GTNNAC 4 cut(s) 330, 573, 1108, 1156
Hpy188I TCNGA 9 cut(s) 79, 355, 436, 764, 856, 1030, 1081, 1218, 1315
Hpy188III TCNNGA 5 cut(s) 868, 953, 974, 1146, 1451
Hpy8I GTNNAC 4 cut(s) 330, 573, 1108, 1156
HpyAV CCTTC 6 cut(s) 104, 137, 292, 632, 950, 1192
HpyCH4III ACNGT 1 cut(s) 1380
HpyCH4IV ACGT 4 cut(s) 685, 947, 1104, 1134
HpyF10VI GCNNNNNNNGC 1 cut(s) 59
HpyF3I CTNAG 3 cut(s) 78, 853, 1312
HpySE526I ACGT 4 cut(s) 685, 947, 1104, 1134
Hsp92II CATG 5 cut(s) 286, 1213, 1356, 1421, 1436
HspAI GCGC 5 cut(s) 180, 220, 222, 921, 1415
Ksp22I TGATCA 1 cut(s) 42
Kzo9I GATC 7 cut(s) 42, 110, 891, 1122, 1182, 1288, 1327
LweI GCATC 5 cut(s) 191, 505, 610, 1281, 1456
MaeI CTAG 2 cut(s) 788, 1470
MaeII ACGT 4 cut(s) 685, 947, 1104, 1134
MaeIII GTNAC 3 cut(s) 630, 742, 778
MalI GATC 7 cut(s) 44, 112, 893, 1124, 1184, 1290, 1329
MboI GATC 7 cut(s) 42, 110, 891, 1122, 1182, 1288, 1327
MfeI CAATTG 1 cut(s) 912
MflI RGATCY 2 cut(s) 891, 1182
MluCI AATT 7 cut(s) 127, 289, 912, 1009, 1138, 1280, 1392
MluI ACGCGT 1 cut(s) 207
MlyI GAGTC 3 cut(s) 89, 245, 1032
MseI TTAA 3 cut(s) 582, 696, 1235
MslI CAYNNNNRTG 1 cut(s) 1226
MspA1I CMGCKG 4 cut(s) 53, 65, 454, 1342
MspI CCGG 3 cut(s) 342, 427, 511
MspR9I CCNGG 3 cut(s) 511, 512, 889
MunI CAATTG 1 cut(s) 912
Mva1269I GAATGC 2 cut(s) 499, 818
MvaI CCWGG 1 cut(s) 889
MvnI CGCG 4 cut(s) 209, 222, 224, 975
MwoI GCNNNNNNNGC 1 cut(s) 59
NciI CCSGG 2 cut(s) 511, 512
NdeII GATC 7 cut(s) 42, 110, 891, 1122, 1182, 1288, 1327
NheI GCTAGC 1 cut(s) 1469
NlaIII CATG 5 cut(s) 286, 1213, 1356, 1421, 1436
NlaIV GGNNCC 3 cut(s) 340, 881, 893
NmeAIII GCCGAG 1 cut(s) 283
NmuCI GTSAC 1 cut(s) 630
NruI TCGCGA 1 cut(s) 975
NsbI TGCGCA 1 cut(s) 181
NspI RCATGY 1 cut(s) 1436
NspV TTCGAA 1 cut(s) 1014
PaeR7I CTCGAG 1 cut(s) 924
PauI GCGCGC 1 cut(s) 220
PceI AGGCCT 1 cut(s) 1442
PcsI WCGNNNNNNNCGW 1 cut(s) 255
PctI GAATGC 2 cut(s) 499, 818
PfeI GAWTC 6 cut(s) 226, 423, 521, 1167, 1213, 1457
PfoI TCCNGGA 1 cut(s) 887
PleI GAGTC 3 cut(s) 88, 245, 1032
PpsI GAGTC 3 cut(s) 88, 245, 1032
Ppu21I YACGTR 2 cut(s) 948, 1135
PpuMI RGGWCCY 1 cut(s) 1252
Psp5II RGGWCCY 1 cut(s) 1252
Psp6I CCWGG 1 cut(s) 887
PspFI CCCAGC 1 cut(s) 1057
PspGI CCWGG 1 cut(s) 887
PspN4I GGNNCC 3 cut(s) 340, 881, 893
PspPI GGNCC 2 cut(s) 491, 1252
PspPPI RGGWCCY 1 cut(s) 1252
PspXI VCTCGAGB 1 cut(s) 924
PstI CTGCAG 2 cut(s) 92, 1182
PsuI RGATCY 2 cut(s) 891, 1182
PteI GCGCGC 1 cut(s) 220
PvuII CAGCTG 3 cut(s) 65, 454, 1342
RruI TCGCGA 1 cut(s) 975
RsaI GTAC 2 cut(s) 1103, 1173
RsaNI GTAC 2 cut(s) 1102, 1172
RseI CAYNNNNRTG 1 cut(s) 1226
SaqAI TTAA 3 cut(s) 582, 696, 1235
Sau3AI GATC 7 cut(s) 42, 110, 891, 1122, 1182, 1288, 1327
Sau96I GGNCC 2 cut(s) 491, 1252
SchI GAGTC 3 cut(s) 89, 245, 1032
ScrFI CCNGG 3 cut(s) 511, 512, 889
SfaNI GCATC 5 cut(s) 191, 505, 610, 1281, 1456
SfcI CTRYAG 4 cut(s) 88, 1117, 1156, 1178
Sfr274I CTCGAG 1 cut(s) 924
SfuI TTCGAA 1 cut(s) 1014
SinI GGWCC 2 cut(s) 491, 1252
SlaI CTCGAG 1 cut(s) 924
SmaI CCCGGG 1 cut(s) 512
SmiMI CAYNNNNRTG 1 cut(s) 1226
SmlI CTYRAG 2 cut(s) 902, 924
SmoI CTYRAG 2 cut(s) 902, 924
Sse9I AATT 7 cut(s) 127, 289, 912, 1009, 1138, 1280, 1392
SseBI AGGCCT 1 cut(s) 1442
SsiI CCGC 2 cut(s) 51, 459
SspMI CTAG 2 cut(s) 788, 1470
StuI AGGCCT 1 cut(s) 1442
StyD4I CCNGG 3 cut(s) 509, 510, 887
StyI CCWWGG 1 cut(s) 625
TaaI ACNGT 1 cut(s) 1380
TaiI ACGT 4 cut(s) 688, 950, 1107, 1137
TaqI TCGA 4 cut(s) 83, 249, 925, 1014
TasI AATT 7 cut(s) 127, 289, 912, 1009, 1138, 1280, 1392
TfiI GAWTC 6 cut(s) 226, 423, 521, 1167, 1213, 1457
Tru1I TTAA 3 cut(s) 582, 696, 1235
Tru9I TTAA 3 cut(s) 582, 696, 1235
TscAI CASTG 2 cut(s) 422, 564
TseFI GTSAC 1 cut(s) 630
Tsp45I GTSAC 1 cut(s) 630
TspDTI ATGAA 8 cut(s) 25, 86, 299, 492, 825, 1131, 1226, 1293
TspGWI ACGGA 2 cut(s) 729, 858
TspMI CCCGGG 1 cut(s) 510
TspRI CASTG 2 cut(s) 422, 564
VpaK11BI GGWCC 2 cut(s) 491, 1252
XapI RAATTY 5 cut(s) 127, 289, 1009, 1138, 1280
XceI RCATGY 1 cut(s) 1436
XhoI CTCGAG 1 cut(s) 924
XmaI CCCGGG 1 cut(s) 510
XmiI GTMKAC 2 cut(s) 572, 1155
XspI CTAG 2 cut(s) 788, 1470
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.