Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4C

Orthogroup ID

OG0005183

Physical Location & Seq

Genomic Coordinates Forward (+)

67339922 .. 67346095

Gene Structure 6174 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4CG434400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1503 bp

ATGGCTAGACTCATCTCGATTTTCTGTAGTTATAGTCAAATGAAGTATAGACAAGTACCACCCCTTTTGATTCCAGTCCTTGTGTTCCTCACTGCCATGAATTTTGTTGTCTCACAAGCCCCTGGTGCAGTATGTGTCCTTGATATTCAACAATCTTCATCTTGGAGTAGCTCAAGTTGCGAAGCAGGCACTTGGGGAGGGTTTGTCAGTAATTGTAATTGCGGAGCAGCTTTTGATGACTACCTATCTGCCTTGGGACGCAGGGCAAACCACACTGGTAGACAGCTCTTCTTAAATTCAACAGGGCAGGAAAACTGCTTAGATTTGATGAAGAGTATCAAAAGTGATGTTTTCAGTTGTGGAATTGATAAGCTAACGAGTGGAGGTGGTGGCTGCTCTGACTATACTAAACTAGATGTTGTTCATAATCTAGGTAGCACATTGCAAGATTTAGGCGAAGACTGTAAACTTCTGGGGGCAGCTGGAATATCTGATCAGGCTTGCAGTTCTTGTTTGGGAAAGTGGGAAGAGATTATTGCATCATCAGATAGTAGGGAGTCATCAAAAGTTGAAGCCAATATTTGTGGTTTTGCAGTTTTGGTGTCTTTAACTAGCAACAGGATTCATGACAAGAATTGGGTTCAAGCAGTTTATCAATGCCTTGGAAATCATATACTTTCAGATTCCGGAGATCAGCGGCAGAAAAAACCAAAAAGCAGCTTTCTAAAACTGAAGACAGGTCTTTGGATTCTATCTGGTGGTCTAGCAGGAATTACTGTAATATTAGCAATAAGTATGTGGACCTTATGCAAGAAAAAGAAACCAGTAGAGATCTTTTCAACTGCAAAAGATAAAAAAGAAGACGATCCAAATGATTCACTGACTCAAGAATCCAGCCTCAAAATATCAACTAAACACATTTATGCAGCAACCAACAATTTAAATGCATTGAACTTCATTGGCCAAGGTGAAGCTGGAAAGGTATACAGAGGTGTACTCTTAAATGGGCTTGAGGTTGCAGTCAAGCACATAATCAATGATGGATATGTATCCATCGAGACATTTGTCAGAGAAGTGACAAGCCTTTCACATGTTAGACATCCAAACCTTGTAGCGTTACTTGGACATTGCGTAGATACAGAAGAATGTTTCCTGGTGTATGAATTGTGCAACAATGGGAACCTCTCGGAGTGGCTATTTGGAAAAGATAGAAGTCTTCCATGGATTCAGAGACTTGAGATTGCAATTGATAGTGCAAGGGGTCTTTGGTTTCTTCACACTTTTCCACAAGGCTGCATTGTTCACCGTGATGTCAAGGTAAAGCCTATCCTATTTATCTGCTTCATCTTCTGCTTTTCTATCCTGCTCTCTTTTCTTCAAGCAATTTTTCTTGCCACAATTCTTATTTGCAGCCAACAAACATACTCATCACTACCAACTTTCAAGCAAAACTGTCCGACTTTGGGTTATCTAAAGTTATGGACGTGGGGCAGTCCTATGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004675 GO:0004888 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0007166 GO:0007167 GO:0007178 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019199 GO:0019538 GO:0023052 GO:0036211 GO:0038023 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0060089 GO:0065007 GO:0071704 GO:0071944 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pkinase Pkinase_Tyr

Protein Analysis

500

Amino Acids

54.97

Weight (kDa)

7.74

Isoelectric Point (pI)

36.56

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SPARK	PF19160	44 - 187	1.3e-08	SPARK
PK_Tyr_Ser-Thr	PF07714	317 - 444	8e-22	Protein tyrosine and serine/threonine kinase
Pkinase	PF00069	317 - 445	5.8e-18	Protein kinase domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005183)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g27000 FvH4_4g34600
malus_domestica	MD09G1035700.v1.1 MD13G1090700.v1.1 MD13G1091000.v1.1
prunus_persica	Prupe.1G254900_v2.0.a1 Prupe.3G282300_v2.0.a1
pyrus_communis	pycom16g07810
rosa_chinensis	RchiOBHm_Chr2g0170941 RchiOBHm_Chr4g0443971
rosa_laevigata	RLG00000005871 RLG00000021994
rosa_multiflora	Rmu_sc0010716.1_g000005 Rmu_sc0025148.1_g000001 Rmu_sc0027702.1_g000001 Rmu_sc0029481.1_g000001
rosa_roxburghii	Rroxscaffold_2G00080960 Rroxscaffold_5G00384520
rosa_rugosa	Rorug02G0552500 Rorug04G0348600
rosa_samantha	Rh2AG625300 Rh2BG636100 Rh2CG604600 Rh2DG647700 Rh4AG409300 Rh4BG420400 Rh4CG434400 Rh4DG415400
rosa_wichuraiana	Rw2G051790 Rw4G035160

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	2 cut(s)	280, 984
AccIII	TCCGGA	1 cut(s)	686
AciI	CCGC	2 cut(s)	222, 697
AclWI	GGATC	1 cut(s)	860
AcoI	YGGCCR	1 cut(s)	961
AcsI	RAATTY	2 cut(s)	100, 295
AcuI	CTGAAG	1 cut(s)	752
AfaI	GTAC	2 cut(s)	57, 996
AfiI	CCNNNNNNNGG	1 cut(s)	1463
AflIII	ACRYGT	1 cut(s)	1090
AgsI	TTSAA	8 cut(s)	149, 300, 572, 644, 840, 952, 1379, 1444
AjiI	CACGTC	1 cut(s)	1485
AjnI	CCWGG	2 cut(s)	121, 1152
AluBI	AGCT	7 cut(s)	171, 230, 286, 373, 482, 720, 974
AluI	AGCT	7 cut(s)	171, 230, 286, 373, 482, 720, 974
Alw26I	GTCTC	3 cut(s)	115, 1052, 1225
AlwI	GGATC	1 cut(s)	860
Aor13HI	TCCGGA	1 cut(s)	686
AoxI	GGCC	1 cut(s)	961
ApeKI	GCWGC	7 cut(s)	227, 393, 479, 717, 926, 1293, 1410
ApoI	RAATTY	2 cut(s)	100, 295
AspS9I	GGNCC	1 cut(s)	801
AsuHPI	GGTGA	2 cut(s)	980, 1295
AvaII	GGWCC	1 cut(s)	801
BalI	TGGCCA	1 cut(s)	963
BbsI	GAAGAC	4 cut(s)	465, 740, 867, 1208
BbvI	GCAGC	7 cut(s)	239, 380, 491, 729, 938, 1280, 1422
BccI	CCATC	2 cut(s)	1034, 1061
BciT130I	CCWGG	2 cut(s)	123, 1154
BciVI	GTATCC	1 cut(s)	1060
BclI	TGATCA	1 cut(s)	493
BcoDI	GTCTC	3 cut(s)	115, 1052, 1225
BfaI	CTAG	5 cut(s)	6, 413, 431, 612, 764
BfmI	CTRYAG	1 cut(s)	25
BfuI	GTATCC	1 cut(s)	1060
BglII	AGATCT	1 cut(s)	831
BisI	GCNGC	8 cut(s)	228, 394, 480, 698, 718, 927, 1294, 1411
BlsI	GCNGC	8 cut(s)	229, 395, 481, 699, 719, 928, 1295, 1412
Bme1390I	CCNGG	2 cut(s)	123, 1154
Bme18I	GGWCC	1 cut(s)	801
BmgBI	CACGTC	1 cut(s)	1485
BmgT120I	GGNCC	1 cut(s)	801
BmiI	GGNNCC	1 cut(s)	1181
BmrFI	CCNGG	2 cut(s)	123, 1154
BmsI	GCATC	1 cut(s)	548
BoxI	GACNNNNGTC	1 cut(s)	1064
BpiI	GAAGAC	4 cut(s)	465, 740, 867, 1208
BplI	GAGNNNNNCTC	2 cut(s)	981, 1013
BpuEI	CTTGAG	4 cut(s)	157, 870, 1031, 1256
BsaBI	GATNNNNATC	1 cut(s)	1048
BsaJI	CCNNGG	5 cut(s)	121, 252, 661, 964, 1220
BsaWI	WCCGGW	1 cut(s)	686
BsaXI	ACNNNNNCTCC	2 cut(s)	189, 219
Bsc4I	CCNNNNNNNGG	1 cut(s)	1463
Bse1I	ACTGG	3 cut(s)	74, 280, 824
Bse3DI	GCAATG	2 cut(s)	440, 1126
Bse8I	GATNNNNATC	1 cut(s)	1048
BseAI	TCCGGA	1 cut(s)	686
BseBI	CCWGG	2 cut(s)	123, 1154
BseDI	CCNNGG	5 cut(s)	121, 252, 661, 964, 1220
BseGI	GGATG	1 cut(s)	1099
BseJI	GATNNNNATC	1 cut(s)	1048
BseLI	CCNNNNNNNGG	1 cut(s)	1463
BseMI	GCAATG	2 cut(s)	440, 1126
BseNI	ACTGG	3 cut(s)	74, 280, 824
BseXI	GCAGC	7 cut(s)	239, 380, 491, 729, 938, 1280, 1422
BsgI	GTGCAG	1 cut(s)	147
BshFI	GGCC	1 cut(s)	963
BsiSI	CCGG	1 cut(s)	687
BslFI	GGGAC	1 cut(s)	270
BslI	CCNNNNNNNGG	1 cut(s)	1463
BsmAI	GTCTC	3 cut(s)	115, 1052, 1225
BsmFI	GGGAC	1 cut(s)	270
BsnI	GGCC	1 cut(s)	963
Bsp13I	TCCGGA	1 cut(s)	686
Bsp143I	GATC	4 cut(s)	493, 691, 831, 865
Bsp19I	CCATGG	1 cut(s)	1220
BspACI	CCGC	2 cut(s)	222, 697
BspANI	GGCC	1 cut(s)	963
BspEI	TCCGGA	1 cut(s)	686
BspHI	TCATGA	1 cut(s)	625
BspLI	GGNNCC	1 cut(s)	1181
BspPI	GGATC	1 cut(s)	860
BspQI	GCTCTTC	1 cut(s)	293
BsrDI	GCAATG	2 cut(s)	440, 1126
BsrI	ACTGG	3 cut(s)	74, 280, 824
BssECI	CCNNGG	5 cut(s)	121, 252, 661, 964, 1220
BssMI	GATC	4 cut(s)	493, 691, 831, 865
BssNAI	GTATAC	1 cut(s)	985
BssT1I	CCWWGG	4 cut(s)	252, 661, 964, 1220
Bst1107I	GTATAC	1 cut(s)	985
Bst2UI	CCWGG	2 cut(s)	123, 1154
Bst4CI	ACNGT	4 cut(s)	464, 778, 1307, 1454
Bst6I	CTCTTC	3 cut(s)	293, 326, 522
BstC8I	GCNNGC	2 cut(s)	187, 502
BstDEI	CTNAG	1 cut(s)	319
BstDSI	CCRYGG	1 cut(s)	1220
BstF5I	GGATG	1 cut(s)	1099
BstKTI	GATC	4 cut(s)	496, 694, 834, 868
BstMAI	GTCTC	3 cut(s)	115, 1052, 1225
BstMBI	GATC	4 cut(s)	493, 691, 831, 865
BstMWI	GCNNNNNNNGC	3 cut(s)	125, 177, 186
BstNI	CCWGG	2 cut(s)	123, 1154
BstNSI	RCATGY	1 cut(s)	1094
BstPAI	GACNNNNGTC	1 cut(s)	1064
BstSCI	CCNGG	2 cut(s)	121, 1152
BstSFI	CTRYAG	1 cut(s)	25
BstV1I	GCAGC	7 cut(s)	239, 380, 491, 729, 938, 1280, 1422
BstV2I	GAAGAC	4 cut(s)	465, 740, 867, 1208
BstX2I	RGATCY	1 cut(s)	831
BstYI	RGATCY	1 cut(s)	831
BstZ17I	GTATAC	1 cut(s)	985
BsuI	GTATCC	1 cut(s)	1060
BsuRI	GGCC	1 cut(s)	963
BtgI	CCRYGG	1 cut(s)	1220
BtrI	CACGTC	1 cut(s)	1485
BtsCI	GGATG	1 cut(s)	1099
BtsI	GCAGTG	1 cut(s)	90
BtsIMutI	CAGTG	3 cut(s)	90, 273, 878
Cac8I	GCNNGC	2 cut(s)	187, 502
CciI	TCATGA	1 cut(s)	625
Cfr13I	GGNCC	1 cut(s)	801
CseI	GACGC	1 cut(s)	267
Csp6I	GTAC	2 cut(s)	56, 995
CspCI	CAANNNNNGTGG	4 cut(s)	48, 83, 565, 600
CviAII	CATG	4 cut(s)	97, 626, 1091, 1221
CviQI	GTAC	2 cut(s)	56, 995
DdeI	CTNAG	1 cut(s)	319
DpnI	GATC	4 cut(s)	495, 693, 833, 867
DpnII	GATC	4 cut(s)	493, 691, 831, 865
DraI	TTTAAA	1 cut(s)	942
EaeI	YGGCCR	1 cut(s)	961
Eam1104I	CTCTTC	3 cut(s)	293, 326, 522
EarI	CTCTTC	3 cut(s)	293, 326, 522
Eco130I	CCWWGG	4 cut(s)	252, 661, 964, 1220
Eco47I	GGWCC	1 cut(s)	801
Eco57I	CTGAAG	1 cut(s)	752
EcoRII	CCWGG	2 cut(s)	121, 1152
EcoT14I	CCWWGG	4 cut(s)	252, 661, 964, 1220
EcoT22I	ATGCAT	1 cut(s)	949
ErhI	CCWWGG	4 cut(s)	252, 661, 964, 1220
FaeI	CATG	4 cut(s)	100, 629, 1094, 1224
FaqI	GGGAC	1 cut(s)	270
FatI	CATG	4 cut(s)	96, 625, 1090, 1220
FbaI	TGATCA	1 cut(s)	493
FblI	GTMKAC	2 cut(s)	280, 984
Fnu4HI	GCNGC	8 cut(s)	228, 394, 480, 698, 718, 927, 1294, 1411
FokI	GGATG	1 cut(s)	1086
Fsp4HI	GCNGC	8 cut(s)	228, 394, 480, 698, 718, 927, 1294, 1411
FspBI	CTAG	5 cut(s)	6, 413, 431, 612, 764
GluI	GCNGC	8 cut(s)	228, 394, 480, 698, 718, 927, 1294, 1411
HaeIII	GGCC	1 cut(s)	963
HapII	CCGG	1 cut(s)	687
HgaI	GACGC	1 cut(s)	267
Hin1II	CATG	4 cut(s)	100, 629, 1094, 1224
HpaII	CCGG	1 cut(s)	687
HphI	GGTGA	2 cut(s)	980, 1295
Hpy166II	GTNNAC	6 cut(s)	281, 467, 801, 985, 995, 1303
Hpy188I	TCNGA	8 cut(s)	400, 493, 547, 682, 1070, 1189, 1230, 1458
Hpy188III	TCNNGA	5 cut(s)	16, 626, 687, 887, 1057
Hpy8I	GTNNAC	6 cut(s)	281, 467, 801, 985, 995, 1303
HpyCH4III	ACNGT	4 cut(s)	464, 778, 1307, 1454
HpyCH4IV	ACGT	1 cut(s)	1484
HpyF10VI	GCNNNNNNNGC	3 cut(s)	125, 177, 186
HpyF3I	CTNAG	1 cut(s)	319
HpySE526I	ACGT	1 cut(s)	1484
Hsp92II	CATG	4 cut(s)	100, 629, 1094, 1224
Kpn2I	TCCGGA	1 cut(s)	686
Ksp22I	TGATCA	1 cut(s)	493
Kzo9I	GATC	4 cut(s)	493, 691, 831, 865
LguI	GCTCTTC	1 cut(s)	293
LmnI	GCTCC	1 cut(s)	224
Lsp1109I	GCAGC	7 cut(s)	239, 380, 491, 729, 938, 1280, 1422
LweI	GCATC	1 cut(s)	548
MaeI	CTAG	5 cut(s)	6, 413, 431, 612, 764
MaeII	ACGT	1 cut(s)	1484
MaeIII	GTNAC	2 cut(s)	1075, 1116
MalI	GATC	4 cut(s)	495, 693, 833, 867
MboI	GATC	4 cut(s)	493, 691, 831, 865
MfeI	CAATTG	1 cut(s)	1245
MflI	RGATCY	1 cut(s)	831
MlsI	TGGCCA	1 cut(s)	963
MluNI	TGGCCA	1 cut(s)	963
MlyI	GAGTC	3 cut(s)	3, 566, 877
MmeI	TCCRAC	1 cut(s)	1481
MnlI	CCTC	7 cut(s)	98, 191, 377, 908, 983, 1006, 1193
Mox20I	TGGCCA	1 cut(s)	963
Mph1103I	ATGCAT	1 cut(s)	949
MroI	TCCGGA	1 cut(s)	686
MscI	TGGCCA	1 cut(s)	963
MseI	TTAA	4 cut(s)	293, 608, 941, 1001
MslI	CAYNNNNRTG	3 cut(s)	95, 921, 1308
Msp20I	TGGCCA	1 cut(s)	963
MspA1I	CMGCKG	2 cut(s)	482, 697
MspI	CCGG	1 cut(s)	687
MspR9I	CCNGG	2 cut(s)	123, 1154
MunI	CAATTG	1 cut(s)	1245
MvaI	CCWGG	2 cut(s)	123, 1154
MwoI	GCNNNNNNNGC	3 cut(s)	125, 177, 186
NcoI	CCATGG	1 cut(s)	1220
NdeII	GATC	4 cut(s)	493, 691, 831, 865
NlaIII	CATG	4 cut(s)	100, 629, 1094, 1224
NlaIV	GGNNCC	1 cut(s)	1181
NmuCI	GTSAC	1 cut(s)	1075
NsiI	ATGCAT	1 cut(s)	949
NspI	RCATGY	1 cut(s)	1094
PagI	TCATGA	1 cut(s)	625
PciI	ACATGT	1 cut(s)	1090
PciSI	GCTCTTC	1 cut(s)	293
PfeI	GAWTC	7 cut(s)	70, 622, 683, 748, 875, 890, 1225
PkrI	GCNGC	8 cut(s)	229, 395, 481, 699, 719, 928, 1295, 1412
PleI	GAGTC	3 cut(s)	3, 565, 877
PpsI	GAGTC	3 cut(s)	3, 565, 877
PscI	ACATGT	1 cut(s)	1090
PshAI	GACNNNNGTC	1 cut(s)	1064
Psp6I	CCWGG	2 cut(s)	121, 1152
PspGI	CCWGG	2 cut(s)	121, 1152
PspN4I	GGNNCC	1 cut(s)	1181
PspPI	GGNCC	1 cut(s)	801
PsuI	RGATCY	1 cut(s)	831
PvuII	CAGCTG	1 cut(s)	482
RsaI	GTAC	2 cut(s)	57, 996
RsaNI	GTAC	2 cut(s)	56, 995
RseI	CAYNNNNRTG	3 cut(s)	95, 921, 1308
SapI	GCTCTTC	1 cut(s)	293
SaqAI	TTAA	4 cut(s)	293, 608, 941, 1001
SatI	GCNGC	8 cut(s)	228, 394, 480, 698, 718, 927, 1294, 1411
Sau3AI	GATC	4 cut(s)	493, 691, 831, 865
Sau96I	GGNCC	1 cut(s)	801
SchI	GAGTC	3 cut(s)	3, 566, 877
ScrFI	CCNGG	2 cut(s)	123, 1154
SfaNI	GCATC	1 cut(s)	548
SfcI	CTRYAG	1 cut(s)	25
SinI	GGWCC	1 cut(s)	801
SmiI	ATTTAAAT	1 cut(s)	942
SmiMI	CAYNNNNRTG	3 cut(s)	95, 921, 1308
SmlI	CTYRAG	4 cut(s)	172, 885, 1010, 1235
SmoI	CTYRAG	4 cut(s)	172, 885, 1010, 1235
SsiI	CCGC	2 cut(s)	222, 697
SspI	AATATT	2 cut(s)	580, 783
SspMI	CTAG	5 cut(s)	6, 413, 431, 612, 764
StyD4I	CCNGG	2 cut(s)	121, 1152
StyI	CCWWGG	4 cut(s)	252, 661, 964, 1220
SwaI	ATTTAAAT	1 cut(s)	942
TaaI	ACNGT	4 cut(s)	464, 778, 1307, 1454
TaiI	ACGT	1 cut(s)	1487
TaqI	TCGA	2 cut(s)	17, 1056
TatI	WGTACW	1 cut(s)	994
TauI	GCSGC	1 cut(s)	700
TfiI	GAWTC	7 cut(s)	70, 622, 683, 748, 875, 890, 1225
Tru1I	TTAA	4 cut(s)	293, 608, 941, 1001
Tru9I	TTAA	4 cut(s)	293, 608, 941, 1001
TscAI	CASTG	3 cut(s)	97, 280, 885
TseFI	GTSAC	1 cut(s)	1075
TseI	GCWGC	7 cut(s)	227, 393, 479, 717, 926, 1293, 1410
Tsp45I	GTSAC	1 cut(s)	1075
TspDTI	ATGAA	9 cut(s)	56, 113, 147, 344, 413, 614, 946, 1176, 1333
TspRI	CASTG	3 cut(s)	97, 280, 885
VpaK11BI	GGWCC	1 cut(s)	801
XapI	RAATTY	2 cut(s)	100, 295
XceI	RCATGY	1 cut(s)	1094
XcmI	CCANNNNNNNNNTGG	1 cut(s)	971
XmiI	GTMKAC	2 cut(s)	280, 984
XspI	CTAG	5 cut(s)	6, 413, 431, 612, 764
Zsp2I	ATGCAT	1 cut(s)	949

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.