Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr2

Orthogroup ID

OG0005183

Physical Location & Seq

Genomic Coordinates Reverse (-)

79428415 .. 79430738

Gene Structure 2324 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw2G051790.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 975 bp

ATGGAGACTGGGGAGGCAGCATTCAAGGATGTAATTTTTAAGGAGTCCGGCTGTCCAAAAATTCCGATCAAGGAAGTGTTATATGCTACAGACAATCTAAGCCCAGTACATTTCCTTGGTGAAGGAACTGCTGGAAAGGTTTATAGAGGTATACTGTCGAATAATCAGCCAGTAGCAATTAAGCACATTATCGATGATGAAAATGTGGAGTCTTTTGCCAGAGAATTTACAAGCTTATCACACATCAGACACCCCAACCTTGTTACTTTGCTTGGTTACTGTCTACAGGAAGATGAGTGTTTCATTGTGTATGAGCTTTGTCCAAATGGGAACCTCTCAGAATGGCTTTTCGGTAAAGATAAGTGCCTGTCCTGGATCCAGAGGCTTGAGATTGCAATTGATAGCGCTCAAGGTCTATTGTTTCTCCACACGTATCCAGAAGGCTGCATTGTTCATCGTGACATCAAGCCAACAAACATTCTCCTTGGGGACAATTTTGAAGCCAAGCTATCGGACTTTGGACTATCTAAGATCATTGAACTGGGTGAAACCTATGTGAGTTCAGAAGTGAGAGGAACTTTTGGTTATGTTGATCCTGACTACCAGAGAAACCACCATGTAAATTCTTCTGGAGATGTCTACAGCTTTGGAATTGTGCTTCTACAAATCCTATCAGGAAAGAGGGTTATCAATATGAATCTGAACACACCACTGCCATTAAATAAAATGGCAAAAGGCCTTAACAGAACTGGCAGCATCAATGAATTTGCCGATCCTAAACTCGATGGGGAATACTCAGCAGAAGCTTTCAATCTCACACTTCAGCTGGCTCTGTCATGCACAGAACTTAGACAACAAAGACCATCCATGGAGCAAATTGTTGTCAGATTAGGACAGGCACATGACATATCAACACAGGCAAAGGCCTCTACTCCTGAAGTTTCAATAGACAGCTACCAAAGTTCAAATCCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pkinase

Protein Analysis

324

Amino Acids

36.06

Weight (kDa)

5.16

Isoelectric Point (pI)

33.37

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pkinase	PF00069	37 - 294	4.2e-40	Protein kinase domain
PK_Tyr_Ser-Thr	PF07714	38 - 229	4.7e-40	Protein tyrosine and serine/threonine kinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005183)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g27000 FvH4_4g34600
malus_domestica	MD09G1035700.v1.1 MD13G1090700.v1.1 MD13G1091000.v1.1
prunus_persica	Prupe.1G254900_v2.0.a1 Prupe.3G282300_v2.0.a1
pyrus_communis	pycom16g07810
rosa_chinensis	RchiOBHm_Chr2g0170941 RchiOBHm_Chr4g0443971
rosa_laevigata	RLG00000005871 RLG00000021994
rosa_multiflora	Rmu_sc0010716.1_g000005 Rmu_sc0025148.1_g000001 Rmu_sc0027702.1_g000001 Rmu_sc0029481.1_g000001
rosa_roxburghii	Rroxscaffold_2G00080960 Rroxscaffold_5G00384520
rosa_rugosa	Rorug02G0552500 Rorug04G0348600
rosa_samantha	Rh2AG625300 Rh2BG636100 Rh2CG604600 Rh2DG647700 Rh4AG409300 Rh4BG420400 Rh4CG434400 Rh4DG415400
rosa_wichuraiana	Rw2G051790 Rw4G035160

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	3 cut(s)	151, 283, 639
AclWI	GGATC	4 cut(s)	370, 383, 587, 767
AcsI	RAATTY	4 cut(s)	60, 224, 622, 764
AcuI	CTGAAG	2 cut(s)	806, 957
AfaI	GTAC	1 cut(s)	108
AfeI	AGCGCT	1 cut(s)	406
AflIII	ACRYGT	1 cut(s)	429
AgsI	TTSAA	6 cut(s)	25, 500, 539, 811, 945, 966
AjnI	CCWGG	1 cut(s)	371
AluBI	AGCT	7 cut(s)	234, 316, 508, 645, 806, 826, 954
AluI	AGCT	7 cut(s)	234, 316, 508, 645, 806, 826, 954
AlwI	GGATC	4 cut(s)	370, 383, 587, 767
Aor51HI	AGCGCT	1 cut(s)	406
AoxI	GGCC	2 cut(s)	736, 924
ApeKI	GCWGC	3 cut(s)	17, 444, 753
ApoI	RAATTY	4 cut(s)	60, 224, 622, 764
AspLEI	GCGC	1 cut(s)	407
AsuHPI	GGTGA	2 cut(s)	131, 557
BamHI	GGATCC	1 cut(s)	375
BbvI	GCAGC	3 cut(s)	29, 431, 765
BccI	CCATC	2 cut(s)	779, 871
BciT130I	CCWGG	1 cut(s)	373
BciVI	GTATCC	1 cut(s)	444
BfmI	CTRYAG	3 cut(s)	87, 284, 640
BfoI	RGCGCY	1 cut(s)	408
BfuI	GTATCC	1 cut(s)	444
BisI	GCNGC	3 cut(s)	18, 445, 754
BlsI	GCNGC	3 cut(s)	19, 446, 755
Bme1390I	CCNGG	1 cut(s)	373
BmiI	GGNNCC	2 cut(s)	332, 377
BmrFI	CCNGG	1 cut(s)	373
BmrI	ACTGGG	3 cut(s)	18, 98, 551
BmsI	GCATC	1 cut(s)	765
BmuI	ACTGGG	3 cut(s)	18, 98, 551
BpmI	CTGGAG	1 cut(s)	651
BpuEI	CTTGAG	2 cut(s)	393, 407
Bsa29I	ATCGAT	1 cut(s)	192
BsaAI	YACGTR	1 cut(s)	432
BsaJI	CCNNGG	3 cut(s)	115, 484, 867
Bse1I	ACTGG	5 cut(s)	13, 104, 170, 546, 754
BseBI	CCWGG	1 cut(s)	373
BseCI	ATCGAT	1 cut(s)	192
BseDI	CCNNGG	3 cut(s)	115, 484, 867
BseGI	GGATG	2 cut(s)	34, 863
BseMII	CTCAG	2 cut(s)	351, 810
BseNI	ACTGG	5 cut(s)	13, 104, 170, 546, 754
BseXI	GCAGC	3 cut(s)	29, 431, 765
BshFI	GGCC	2 cut(s)	738, 926
BshVI	ATCGAT	1 cut(s)	192
BsiSI	CCGG	1 cut(s)	48
BslFI	GGGAC	1 cut(s)	503
BsmFI	GGGAC	1 cut(s)	503
BsmI	GAATGC	1 cut(s)	20
BsnI	GGCC	2 cut(s)	738, 926
Bsp143I	GATC	5 cut(s)	66, 375, 531, 592, 772
Bsp19I	CCATGG	1 cut(s)	867
BspANI	GGCC	2 cut(s)	738, 926
BspCNI	CTCAG	2 cut(s)	350, 809
BspDI	ATCGAT	1 cut(s)	192
BspLI	GGNNCC	2 cut(s)	332, 377
BspPI	GGATC	4 cut(s)	370, 383, 587, 767
BsrI	ACTGG	5 cut(s)	13, 104, 170, 546, 754
BssECI	CCNNGG	3 cut(s)	115, 484, 867
BssMI	GATC	5 cut(s)	66, 375, 531, 592, 772
BssNAI	GTATAC	1 cut(s)	152
BssT1I	CCWWGG	3 cut(s)	115, 484, 867
Bst1107I	GTATAC	1 cut(s)	152
Bst2UI	CCWGG	1 cut(s)	373
Bst4CI	ACNGT	2 cut(s)	156, 281
BstBAI	YACGTR	1 cut(s)	432
BstC8I	GCNNGC	1 cut(s)	828
BstDEI	CTNAG	5 cut(s)	98, 337, 528, 796, 848
BstDSI	CCRYGG	1 cut(s)	867
BstF5I	GGATG	2 cut(s)	34, 863
BstH2I	RGCGCY	1 cut(s)	408
BstHHI	GCGC	1 cut(s)	407
BstKTI	GATC	5 cut(s)	69, 378, 534, 595, 775
BstMBI	GATC	5 cut(s)	66, 375, 531, 592, 772
BstNI	CCWGG	1 cut(s)	373
BstSCI	CCNGG	1 cut(s)	371
BstSFI	CTRYAG	3 cut(s)	87, 284, 640
BstV1I	GCAGC	3 cut(s)	29, 431, 765
BstX2I	RGATCY	1 cut(s)	375
BstYI	RGATCY	1 cut(s)	375
BstZ17I	GTATAC	1 cut(s)	152
Bsu15I	ATCGAT	1 cut(s)	192
BsuI	GTATCC	1 cut(s)	444
BsuRI	GGCC	2 cut(s)	738, 926
BsuTUI	ATCGAT	1 cut(s)	192
BtgI	CCRYGG	1 cut(s)	867
BtsCI	GGATG	2 cut(s)	34, 863
BtsI	GCAGTG	1 cut(s)	710
BtsIMutI	CAGTG	1 cut(s)	710
Cac8I	GCNNGC	1 cut(s)	828
CfoI	GCGC	1 cut(s)	407
ClaI	ATCGAT	1 cut(s)	192
Csp6I	GTAC	1 cut(s)	107
CviAII	CATG	5 cut(s)	617, 837, 868, 902, 972
CviQI	GTAC	1 cut(s)	107
DdeI	CTNAG	5 cut(s)	98, 337, 528, 796, 848
DpnI	GATC	5 cut(s)	68, 377, 533, 594, 774
DpnII	GATC	5 cut(s)	66, 375, 531, 592, 772
Eco130I	CCWWGG	3 cut(s)	115, 484, 867
Eco147I	AGGCCT	2 cut(s)	738, 926
Eco47III	AGCGCT	1 cut(s)	406
Eco57I	CTGAAG	2 cut(s)	806, 957
EcoRII	CCWGG	1 cut(s)	371
EcoT14I	CCWWGG	3 cut(s)	115, 484, 867
ErhI	CCWWGG	3 cut(s)	115, 484, 867
FaeI	CATG	5 cut(s)	620, 840, 871, 905, 975
FaqI	GGGAC	1 cut(s)	503
FatI	CATG	5 cut(s)	616, 836, 867, 901, 971
FblI	GTMKAC	3 cut(s)	151, 283, 639
Fnu4HI	GCNGC	3 cut(s)	18, 445, 754
FokI	GGATG	2 cut(s)	41, 850
Fsp4HI	GCNGC	3 cut(s)	18, 445, 754
GlaI	GCGC	1 cut(s)	406
GluI	GCNGC	3 cut(s)	18, 445, 754
GsuI	CTGGAG	1 cut(s)	651
HaeII	RGCGCY	1 cut(s)	408
HaeIII	GGCC	2 cut(s)	738, 926
HapII	CCGG	1 cut(s)	48
HhaI	GCGC	1 cut(s)	407
Hin1II	CATG	5 cut(s)	620, 840, 871, 905, 975
Hin6I	GCGC	1 cut(s)	405
HinP1I	GCGC	1 cut(s)	405
HindIII	AAGCTT	2 cut(s)	232, 804
HinfI	GANTC	3 cut(s)	44, 209, 697
HpaII	CCGG	1 cut(s)	48
HphI	GGTGA	2 cut(s)	131, 557
Hpy166II	GTNNAC	3 cut(s)	152, 284, 640
Hpy188I	TCNGA	7 cut(s)	66, 248, 340, 514, 565, 702, 887
Hpy188III	TCNNGA	7 cut(s)	379, 437, 458, 596, 630, 675, 935
Hpy8I	GTNNAC	3 cut(s)	152, 284, 640
HpyAV	CCTTC	2 cut(s)	116, 434
HpyCH4III	ACNGT	2 cut(s)	156, 281
HpyCH4IV	ACGT	1 cut(s)	431
HpyCH4V	TGCA	3 cut(s)	395, 447, 840
HpyF3I	CTNAG	5 cut(s)	98, 337, 528, 796, 848
HpySE526I	ACGT	1 cut(s)	431
Hsp92II	CATG	5 cut(s)	620, 840, 871, 905, 975
HspAI	GCGC	1 cut(s)	405
Kzo9I	GATC	5 cut(s)	66, 375, 531, 592, 772
LmnI	GCTCC	1 cut(s)	871
Lsp1109I	GCAGC	3 cut(s)	29, 431, 765
LweI	GCATC	1 cut(s)	765
MaeII	ACGT	1 cut(s)	431
MaeIII	GTNAC	3 cut(s)	262, 275, 458
MalI	GATC	5 cut(s)	68, 377, 533, 594, 774
MboI	GATC	5 cut(s)	66, 375, 531, 592, 772
MboII	GAAGA	2 cut(s)	302, 618
MfeI	CAATTG	1 cut(s)	396
MflI	RGATCY	1 cut(s)	375
MlyI	GAGTC	2 cut(s)	53, 218
MnlI	CCTC	7 cut(s)	7, 140, 344, 375, 566, 675, 937
MseI	TTAA	4 cut(s)	39, 180, 719, 741
MspA1I	CMGCKG	1 cut(s)	826
MspI	CCGG	1 cut(s)	48
MspR9I	CCNGG	1 cut(s)	373
MunI	CAATTG	1 cut(s)	396
Mva1269I	GAATGC	1 cut(s)	20
MvaI	CCWGG	1 cut(s)	373
NcoI	CCATGG	1 cut(s)	867
NdeII	GATC	5 cut(s)	66, 375, 531, 592, 772
NlaIII	CATG	5 cut(s)	620, 840, 871, 905, 975
NlaIV	GGNNCC	2 cut(s)	332, 377
NmuCI	GTSAC	1 cut(s)	458
PceI	AGGCCT	2 cut(s)	738, 926
PctI	GAATGC	1 cut(s)	20
PfeI	GAWTC	1 cut(s)	697
PfoI	TCCNGGA	1 cut(s)	371
PkrI	GCNGC	3 cut(s)	19, 446, 755
PleI	GAGTC	2 cut(s)	52, 217
PpsI	GAGTC	2 cut(s)	52, 217
Ppu21I	YACGTR	1 cut(s)	432
Psp6I	CCWGG	1 cut(s)	371
PspGI	CCWGG	1 cut(s)	371
PspN4I	GGNNCC	2 cut(s)	332, 377
PsuI	RGATCY	1 cut(s)	375
PvuII	CAGCTG	1 cut(s)	826
RsaI	GTAC	1 cut(s)	108
RsaNI	GTAC	1 cut(s)	107
SaqAI	TTAA	4 cut(s)	39, 180, 719, 741
SatI	GCNGC	3 cut(s)	18, 445, 754
Sau3AI	GATC	5 cut(s)	66, 375, 531, 592, 772
SchI	GAGTC	2 cut(s)	53, 218
ScrFI	CCNGG	1 cut(s)	373
SfaNI	GCATC	1 cut(s)	765
SfcI	CTRYAG	3 cut(s)	87, 284, 640
SmlI	CTYRAG	2 cut(s)	386, 408
SmoI	CTYRAG	2 cut(s)	386, 408
SseBI	AGGCCT	2 cut(s)	738, 926
StuI	AGGCCT	2 cut(s)	738, 926
StyD4I	CCNGG	1 cut(s)	371
StyI	CCWWGG	3 cut(s)	115, 484, 867
TaaI	ACNGT	2 cut(s)	156, 281
TaiI	ACGT	1 cut(s)	434
TaqI	TCGA	3 cut(s)	158, 192, 783
TatI	WGTACW	1 cut(s)	106
TfiI	GAWTC	1 cut(s)	697
Tru1I	TTAA	4 cut(s)	39, 180, 719, 741
Tru9I	TTAA	4 cut(s)	39, 180, 719, 741
TscAI	CASTG	1 cut(s)	717
TseFI	GTSAC	1 cut(s)	458
TseI	GCWGC	3 cut(s)	17, 444, 753
Tsp45I	GTSAC	1 cut(s)	458
TspDTI	ATGAA	5 cut(s)	213, 292, 443, 710, 777
TspRI	CASTG	1 cut(s)	717
XapI	RAATTY	4 cut(s)	60, 224, 622, 764
XmiI	GTMKAC	3 cut(s)	151, 283, 639

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.