Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0027702.1

Orthogroup ID

OG0005183

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 1190

Gene Structure 1190 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0027702.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 797 bp

gaaaggtatacaaaggtgtactcttaaatgggcttgaggttgcagtcaagcacataatcaatgatggatatgtatccatcgagacattcgtcagagaagtgacaagcctttcacatgttagacatccaaaccttgtagcattacttggacattgcgtagatacagaagaatgtttcctggtgtatgaattgtgccacaatgggaacctctcggagtggctatttggaaaagatagaagtctaccatggattcagagacttgagattgcaattgatagtgcaaggggtctttggtttcttcacacttttccacaaggctgcattgttcaccgtgatgtcaagccaacaaacatactcatcactgccaactttcaagcaaaactgtccgactttgggttatctaaagttatggacgtggggcagtcctatgtgagctccgaagtgagaggaacatttggttatgttgatcctgagtaccgaaagaatcaccatgtaaatgcttcgggagatgtctacagtttcgggatagttcttctgcagcttatctcagggcgcagggttatcaatctgaattccaagacaccaatgtctcttaaaaagatagccaggggtctcacaaaaggcggtgatgttatggagtttgctgatcccaaacttaacggggagtactcggttgcagcctttgaaattatagtcaaactagctttgtcatgcacaggactaaagcaacaaagaccacgcatggaggaggtggtatcaagactagaaaaggcactacatatctccacacaaatgtag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004675 GO:0004888 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0007166 GO:0007167 GO:0007178 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019199 GO:0019538 GO:0023052 GO:0036211 GO:0038023 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0060089 GO:0065007 GO:0071704 GO:0071944 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pkinase Pkinase_Tyr

Protein Analysis

264

Amino Acids

29.58

Weight (kDa)

8.54

Isoelectric Point (pI)

31.1

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005183)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g27000 FvH4_4g34600
malus_domestica	MD09G1035700.v1.1 MD13G1090700.v1.1 MD13G1091000.v1.1
prunus_persica	Prupe.1G254900_v2.0.a1 Prupe.3G282300_v2.0.a1
pyrus_communis	pycom16g07810
rosa_chinensis	RchiOBHm_Chr2g0170941 RchiOBHm_Chr4g0443971
rosa_laevigata	RLG00000005871 RLG00000021994
rosa_multiflora	Rmu_sc0010716.1_g000005 Rmu_sc0025148.1_g000001 Rmu_sc0027702.1_g000001 Rmu_sc0029481.1_g000001
rosa_roxburghii	Rroxscaffold_2G00080960 Rroxscaffold_5G00384520
rosa_rugosa	Rorug02G0552500 Rorug04G0348600
rosa_samantha	Rh2AG625300 Rh2BG636100 Rh2CG604600 Rh2DG647700 Rh4AG409300 Rh4BG420400 Rh4CG434400 Rh4DG415400
rosa_wichuraiana	Rw2G051790 Rw4G035160

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	585
AccI	GTMKAC	3 cut(s)	8, 240, 512
AciI	CCGC	1 cut(s)	623
AclWI	GGATC	2 cut(s)	460, 640
AcsI	RAATTY	1 cut(s)	570
AfaI	GTAC	3 cut(s)	20, 475, 667
AfiI	CCNNNNNNNGG	1 cut(s)	392
AflIII	ACRYGT	1 cut(s)	114
AgsI	TTSAA	2 cut(s)	373, 685
AjiI	CACGTC	1 cut(s)	414
AjnI	CCWGG	2 cut(s)	176, 604
AluBI	AGCT	3 cut(s)	434, 540, 703
AluI	AGCT	3 cut(s)	434, 540, 703
Alw21I	GWGCWC	1 cut(s)	436
Alw26I	GTCTC	4 cut(s)	76, 249, 593, 616
AlwI	GGATC	2 cut(s)	460, 640
ApeKI	GCWGC	3 cut(s)	317, 537, 676
ApoI	RAATTY	1 cut(s)	570
AspLEI	GCGC	1 cut(s)	554
AsuHPI	GGTGA	3 cut(s)	319, 478, 637
BanII	GRGCYC	1 cut(s)	436
Bbv12I	GWGCWC	1 cut(s)	436
BbvI	GCAGC	3 cut(s)	304, 549, 688
BccI	CCATC	2 cut(s)	58, 85
BciT130I	CCWGG	2 cut(s)	178, 606
BciVI	GTATCC	1 cut(s)	84
BcoDI	GTCTC	4 cut(s)	76, 249, 593, 616
BfaI	CTAG	2 cut(s)	700, 763
BfmI	CTRYAG	2 cut(s)	513, 535
BfuI	GTATCC	1 cut(s)	84
BisI	GCNGC	3 cut(s)	318, 538, 677
BlsI	GCNGC	3 cut(s)	319, 539, 678
BmcAI	AGTACT	1 cut(s)	667
Bme1390I	CCNGG	2 cut(s)	178, 606
BmgBI	CACGTC	1 cut(s)	414
BmiI	GGNNCC	1 cut(s)	205
BmrFI	CCNGG	2 cut(s)	178, 606
BoxI	GACNNNNGTC	1 cut(s)	88
BpuEI	CTTGAG	2 cut(s)	55, 280
BsaBI	GATNNNNATC	1 cut(s)	72
BsaI	GGTCTC	1 cut(s)	616
BsaJI	CCNNGG	2 cut(s)	244, 605
Bsc4I	CCNNNNNNNGG	1 cut(s)	392
Bse3DI	GCAATG	1 cut(s)	150
Bse8I	GATNNNNATC	1 cut(s)	72
BseBI	CCWGG	2 cut(s)	178, 606
BseDI	CCNNGG	2 cut(s)	244, 605
BseGI	GGATG	1 cut(s)	123
BseJI	GATNNNNATC	1 cut(s)	72
BseLI	CCNNNNNNNGG	1 cut(s)	392
BseMI	GCAATG	1 cut(s)	150
BseMII	CTCAG	2 cut(s)	461, 560
BseRI	GAGGAG	1 cut(s)	760
BseXI	GCAGC	3 cut(s)	304, 549, 688
BsiHKAI	GWGCWC	1 cut(s)	436
BslI	CCNNNNNNNGG	1 cut(s)	392
BsmAI	GTCTC	4 cut(s)	76, 249, 593, 616
Bso31I	GGTCTC	1 cut(s)	616
Bsp1286I	GDGCHC	1 cut(s)	436
Bsp143I	GATC	2 cut(s)	465, 645
Bsp19I	CCATGG	1 cut(s)	244
BspACI	CCGC	1 cut(s)	623
BspCNI	CTCAG	2 cut(s)	462, 559
BspLI	GGNNCC	1 cut(s)	205
BspMAI	CTGCAG	1 cut(s)	539
BspPI	GGATC	2 cut(s)	460, 640
BspTNI	GGTCTC	1 cut(s)	616
BsrDI	GCAATG	1 cut(s)	150
BssECI	CCNNGG	2 cut(s)	244, 605
BssMI	GATC	2 cut(s)	465, 645
BssNAI	GTATAC	1 cut(s)	9
BssT1I	CCWWGG	1 cut(s)	244
Bst1107I	GTATAC	1 cut(s)	9
Bst2UI	CCWGG	2 cut(s)	178, 606
Bst4CI	ACNGT	3 cut(s)	331, 383, 517
BstDEI	CTNAG	2 cut(s)	470, 546
BstDSI	CCRYGG	1 cut(s)	244
BstF5I	GGATG	1 cut(s)	123
BstHHI	GCGC	1 cut(s)	554
BstKTI	GATC	2 cut(s)	468, 648
BstMAI	GTCTC	4 cut(s)	76, 249, 593, 616
BstMBI	GATC	2 cut(s)	465, 645
BstNI	CCWGG	2 cut(s)	178, 606
BstNSI	RCATGY	1 cut(s)	118
BstPAI	GACNNNNGTC	1 cut(s)	88
BstSCI	CCNGG	2 cut(s)	176, 604
BstSFI	CTRYAG	2 cut(s)	513, 535
BstV1I	GCAGC	3 cut(s)	304, 549, 688
BstZ17I	GTATAC	1 cut(s)	9
BsuI	GTATCC	1 cut(s)	84
BtgI	CCRYGG	1 cut(s)	244
BtrI	CACGTC	1 cut(s)	414
BtsCI	GGATG	1 cut(s)	123
BtsI	GCAGTG	1 cut(s)	359
BtsIMutI	CAGTG	1 cut(s)	359
CfoI	GCGC	1 cut(s)	554
Csp6I	GTAC	3 cut(s)	19, 474, 666
CviAII	CATG	5 cut(s)	115, 245, 490, 710, 741
CviQI	GTAC	3 cut(s)	19, 474, 666
DdeI	CTNAG	2 cut(s)	470, 546
DpnI	GATC	2 cut(s)	467, 647
DpnII	GATC	2 cut(s)	465, 645
DrdI	GACNNNNNNGTC	1 cut(s)	585
DseDI	GACNNNNNNGTC	1 cut(s)	585
Ecl136II	GAGCTC	1 cut(s)	434
Eco130I	CCWWGG	1 cut(s)	244
Eco24I	GRGCYC	1 cut(s)	436
Eco31I	GGTCTC	1 cut(s)	616
Eco53kI	GAGCTC	1 cut(s)	434
EcoICRI	GAGCTC	1 cut(s)	434
EcoRI	GAATTC	1 cut(s)	570
EcoRII	CCWGG	2 cut(s)	176, 604
EcoT14I	CCWWGG	1 cut(s)	244
EcoT38I	GRGCYC	1 cut(s)	436
ErhI	CCWWGG	1 cut(s)	244
FaeI	CATG	5 cut(s)	118, 248, 493, 713, 744
FatI	CATG	5 cut(s)	114, 244, 489, 709, 740
FblI	GTMKAC	3 cut(s)	8, 240, 512
Fnu4HI	GCNGC	3 cut(s)	318, 538, 677
FokI	GGATG	1 cut(s)	110
FriOI	GRGCYC	1 cut(s)	436
Fsp4HI	GCNGC	3 cut(s)	318, 538, 677
FspBI	CTAG	2 cut(s)	700, 763
GlaI	GCGC	1 cut(s)	553
GluI	GCNGC	3 cut(s)	318, 538, 677
HhaI	GCGC	1 cut(s)	554
Hin1II	CATG	5 cut(s)	118, 248, 493, 713, 744
Hin6I	GCGC	1 cut(s)	552
HinP1I	GCGC	1 cut(s)	552
HinfI	GANTC	2 cut(s)	249, 483
HphI	GGTGA	3 cut(s)	319, 478, 637
Hpy166II	GTNNAC	5 cut(s)	9, 19, 241, 327, 513
Hpy188I	TCNGA	6 cut(s)	94, 213, 254, 387, 438, 569
Hpy188III	TCNNGA	5 cut(s)	81, 469, 503, 522, 758
Hpy8I	GTNNAC	5 cut(s)	9, 19, 241, 327, 513
HpyCH4III	ACNGT	3 cut(s)	331, 383, 517
HpyCH4IV	ACGT	1 cut(s)	413
HpyCH4V	TGCA	7 cut(s)	43, 268, 280, 320, 537, 676, 713
HpyF3I	CTNAG	2 cut(s)	470, 546
HpySE526I	ACGT	1 cut(s)	413
Hsp92II	CATG	5 cut(s)	118, 248, 493, 713, 744
HspAI	GCGC	1 cut(s)	552
Kzo9I	GATC	2 cut(s)	465, 645
LmnI	GCTCC	1 cut(s)	439
LpnPI	CCDG	8 cut(s)	163, 190, 482, 533, 540, 591, 618, 701
Lsp1109I	GCAGC	3 cut(s)	304, 549, 688
MaeI	CTAG	2 cut(s)	700, 763
MaeII	ACGT	1 cut(s)	413
MaeIII	GTNAC	1 cut(s)	99
MalI	GATC	2 cut(s)	467, 647
MboI	GATC	2 cut(s)	465, 645
MboII	GAAGA	3 cut(s)	178, 289, 523
MfeI	CAATTG	1 cut(s)	269
MhlI	GDGCHC	1 cut(s)	436
MluCI	AATT	4 cut(s)	187, 269, 570, 686
MmeI	TCCRAC	1 cut(s)	410
MnlI	CCTC	5 cut(s)	30, 217, 439, 738, 741
MseI	TTAA	3 cut(s)	25, 593, 656
MslI	CAYNNNNRTG	3 cut(s)	332, 494, 790
MspR9I	CCNGG	2 cut(s)	178, 606
MunI	CAATTG	1 cut(s)	269
MvaI	CCWGG	2 cut(s)	178, 606
NcoI	CCATGG	1 cut(s)	244
NdeII	GATC	2 cut(s)	465, 645
NlaIII	CATG	5 cut(s)	118, 248, 493, 713, 744
NlaIV	GGNNCC	1 cut(s)	205
NmuCI	GTSAC	1 cut(s)	99
NspI	RCATGY	1 cut(s)	118
PciI	ACATGT	1 cut(s)	114
PcsI	WCGNNNNNNNCGW	1 cut(s)	86
PfeI	GAWTC	2 cut(s)	249, 483
PkrI	GCNGC	3 cut(s)	319, 539, 678
PscI	ACATGT	1 cut(s)	114
PshAI	GACNNNNGTC	1 cut(s)	88
Psp124BI	GAGCTC	1 cut(s)	436
Psp6I	CCWGG	2 cut(s)	176, 604
PspGI	CCWGG	2 cut(s)	176, 604
PspN4I	GGNNCC	1 cut(s)	205
PstI	CTGCAG	1 cut(s)	539
RsaI	GTAC	3 cut(s)	20, 475, 667
RsaNI	GTAC	3 cut(s)	19, 474, 666
RseI	CAYNNNNRTG	3 cut(s)	332, 494, 790
SacI	GAGCTC	1 cut(s)	436
SaqAI	TTAA	3 cut(s)	25, 593, 656
SatI	GCNGC	3 cut(s)	318, 538, 677
Sau3AI	GATC	2 cut(s)	465, 645
ScaI	AGTACT	1 cut(s)	667
ScrFI	CCNGG	2 cut(s)	178, 606
SduI	GDGCHC	1 cut(s)	436
SfcI	CTRYAG	2 cut(s)	513, 535
SmiMI	CAYNNNNRTG	3 cut(s)	332, 494, 790
SmlI	CTYRAG	2 cut(s)	34, 259
SmoI	CTYRAG	2 cut(s)	34, 259
Sse9I	AATT	4 cut(s)	187, 269, 570, 686
SsiI	CCGC	1 cut(s)	623
SspMI	CTAG	2 cut(s)	700, 763
SstI	GAGCTC	1 cut(s)	436
StyD4I	CCNGG	2 cut(s)	176, 604
StyI	CCWWGG	1 cut(s)	244
TaaI	ACNGT	3 cut(s)	331, 383, 517
TaiI	ACGT	1 cut(s)	416
TaqI	TCGA	1 cut(s)	80
TasI	AATT	4 cut(s)	187, 269, 570, 686
TatI	WGTACW	2 cut(s)	18, 665
TfiI	GAWTC	2 cut(s)	249, 483
Tru1I	TTAA	3 cut(s)	25, 593, 656
Tru9I	TTAA	3 cut(s)	25, 593, 656
TscAI	CASTG	1 cut(s)	366
TseFI	GTSAC	1 cut(s)	99
TseI	GCWGC	3 cut(s)	317, 537, 676
Tsp45I	GTSAC	1 cut(s)	99
TspDTI	ATGAA	1 cut(s)	200
TspRI	CASTG	1 cut(s)	366
XapI	RAATTY	1 cut(s)	570
XceI	RCATGY	1 cut(s)	118
XmiI	GTMKAC	3 cut(s)	8, 240, 512
XspI	CTAG	2 cut(s)	700, 763
ZrmI	AGTACT	1 cut(s)	667

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.