Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000002

Orthogroup ID

OG0005183

Physical Location & Seq

Genomic Coordinates Reverse (-)

67989925 .. 67990494

Gene Structure 570 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug02G0552500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 570 bp

ATGGCAACCATTTCCTTCGATCTACGGCCTAATCTTCAAGCAACTAACAACCATCAACATGGAGGTGTTGTTGAAGAAATTGAAGGCCTTATCAGAGTCCACAAAAATGGATGCATAGAAAGGCCTTCAATTATCCCTAGTGTCCCTTGCACTACTGCAGCAGCTAGAGATGTTGTCATTGACAAATTCACCAACTTGTGGGCGCGTATTTATGTTCCCAGCCATCCCGCGGCCAACAACCTCCCGGTGCTTGTTTACTTTCACGGTGGAGGATTCTGTGTTGGCTCTGCTGCTTGGAGCTGCTACCATGAGTTCCTCAGCAACCTTGCTTGTAAAGCAAGTTGTGTCATCGTCTCTGTTAATTACCGTTTAGCCCCTGAGAACCGTCTCCCTGCTGCCTATGATGATGGTGTCAACGCTGTTATGTGGGTGAAACAACAAGCTCTCAGTCAGAGTTGTGAGCAAAAAAGGTGGTTAAGTCGGTGCAACCTCTCGAGCTTGTTCATAGGTGGTGACAGTGCAGGGGCTAACATAGCCTACAATATTGTCACCACCCAGTTGTCAAATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pkinase

Protein Analysis

189

Amino Acids

20.61

Weight (kDa)

7.6

Isoelectric Point (pI)

60.78

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
COesterase	PF00135	69 - 126	1.3e-10	Carboxylesterase family
BD-FAE	PF20434	70 - 180	1.7e-12	BD-FAE
Abhydrolase_3	PF07859	84 - 183	4.3e-33	alpha/beta hydrolase fold

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005183)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g27000 FvH4_4g34600
malus_domestica	MD09G1035700.v1.1 MD13G1090700.v1.1 MD13G1091000.v1.1
prunus_persica	Prupe.1G254900_v2.0.a1 Prupe.3G282300_v2.0.a1
pyrus_communis	pycom16g07810
rosa_chinensis	RchiOBHm_Chr2g0170941 RchiOBHm_Chr4g0443971
rosa_laevigata	RLG00000005871 RLG00000021994
rosa_multiflora	Rmu_sc0010716.1_g000005 Rmu_sc0025148.1_g000001 Rmu_sc0027702.1_g000001 Rmu_sc0029481.1_g000001
rosa_roxburghii	Rroxscaffold_2G00080960 Rroxscaffold_5G00384520
rosa_rugosa	Rorug02G0552500 Rorug04G0348600
rosa_samantha	Rh2AG625300 Rh2BG636100 Rh2CG604600 Rh2DG647700 Rh4AG409300 Rh4BG420400 Rh4CG434400 Rh4DG415400
rosa_wichuraiana	Rw2G051790 Rw4G035160

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	198
AccII	CGCG	2 cut(s)	205, 230
AciI	CCGC	2 cut(s)	228, 230
AcoI	YGGCCR	1 cut(s)	231
AcsI	RAATTY	1 cut(s)	185
AfiI	CCNNNNNNNGG	2 cut(s)	198, 229
AgsI	TTSAA	4 cut(s)	38, 74, 83, 129
AluBI	AGCT	4 cut(s)	164, 300, 443, 498
AluI	AGCT	4 cut(s)	164, 300, 443, 498
Alw26I	GTCTC	2 cut(s)	358, 392
Ama87I	CYCGRG	1 cut(s)	493
AoxI	GGCC	4 cut(s)	26, 85, 122, 231
ApeKI	GCWGC	5 cut(s)	158, 161, 290, 300, 395
ApoI	RAATTY	1 cut(s)	185
AspLEI	GCGC	1 cut(s)	205
AsuC2I	CCSGG	1 cut(s)	245
AsuHPI	GGTGA	4 cut(s)	181, 442, 524, 541
AvaI	CYCGRG	1 cut(s)	493
BbvCI	CCTCAGC	1 cut(s)	317
BbvI	GCAGC	5 cut(s)	170, 173, 277, 287, 382
BccI	CCATC	3 cut(s)	60, 231, 401
BceAI	ACGGC	1 cut(s)	41
BcnI	CCSGG	1 cut(s)	245
BcoDI	GTCTC	2 cut(s)	358, 392
BfaI	CTAG	2 cut(s)	138, 165
BfmI	CTRYAG	1 cut(s)	156
BisI	GCNGC	6 cut(s)	159, 162, 231, 291, 301, 396
BlsI	GCNGC	6 cut(s)	160, 163, 232, 292, 302, 397
Bme1390I	CCNGG	1 cut(s)	245
BmeT110I	CYCGRG	1 cut(s)	493
BmrFI	CCNGG	1 cut(s)	245
BmrI	ACTGGG	1 cut(s)	550
BmsI	GCATC	1 cut(s)	101
BmuI	ACTGGG	1 cut(s)	550
Bpu10I	CCTNAGC	1 cut(s)	317
BpuMI	CCSGG	1 cut(s)	245
BsaJI	CCNNGG	1 cut(s)	228
BsaXI	ACNNNNNCTCC	2 cut(s)	54, 84
Bsc4I	CCNNNNNNNGG	2 cut(s)	198, 229
Bse1I	ACTGG	1 cut(s)	556
BseDI	CCNNGG	1 cut(s)	228
BseGI	GGATG	2 cut(s)	116, 223
BseLI	CCNNNNNNNGG	2 cut(s)	198, 229
BseMII	CTCAG	3 cut(s)	331, 369, 460
BseNI	ACTGG	1 cut(s)	556
BseXI	GCAGC	5 cut(s)	170, 173, 277, 287, 382
BseYI	CCCAGC	1 cut(s)	218
BsgI	GTGCAG	1 cut(s)	540
Bsh1236I	CGCG	2 cut(s)	205, 230
BshFI	GGCC	4 cut(s)	28, 87, 124, 233
BsiHKCI	CYCGRG	1 cut(s)	493
BsiSI	CCGG	1 cut(s)	245
BslFI	GGGAC	1 cut(s)	128
BslI	CCNNNNNNNGG	2 cut(s)	198, 229
BsmAI	GTCTC	2 cut(s)	358, 392
BsmBI	CGTCTC	2 cut(s)	358, 392
BsmFI	GGGAC	1 cut(s)	128
BsnI	GGCC	4 cut(s)	28, 87, 124, 233
BsoBI	CYCGRG	1 cut(s)	493
Bsp143I	GATC	1 cut(s)	19
BspACI	CCGC	2 cut(s)	228, 230
BspANI	GGCC	4 cut(s)	28, 87, 124, 233
BspCNI	CTCAG	3 cut(s)	330, 370, 459
BspFNI	CGCG	2 cut(s)	205, 230
BspMAI	CTGCAG	1 cut(s)	160
BsrI	ACTGG	1 cut(s)	556
BssECI	CCNNGG	1 cut(s)	228
BssMI	GATC	1 cut(s)	19
Bst4CI	ACNGT	4 cut(s)	266, 368, 386, 518
BstDEI	CTNAG	3 cut(s)	317, 378, 446
BstDSI	CCRYGG	1 cut(s)	228
BstF5I	GGATG	2 cut(s)	116, 223
BstFNI	CGCG	2 cut(s)	205, 230
BstHHI	GCGC	1 cut(s)	205
BstKTI	GATC	1 cut(s)	22
BstMAI	GTCTC	2 cut(s)	358, 392
BstMBI	GATC	1 cut(s)	19
BstMWI	GCNNNNNNNGC	2 cut(s)	335, 533
BstSCI	CCNGG	1 cut(s)	243
BstSFI	CTRYAG	1 cut(s)	156
BstUI	CGCG	2 cut(s)	205, 230
BstV1I	GCAGC	5 cut(s)	170, 173, 277, 287, 382
BstXI	CCANNNNNNTGG	2 cut(s)	59, 107
BsuRI	GGCC	4 cut(s)	28, 87, 124, 233
BtgI	CCRYGG	1 cut(s)	228
BtsCI	GGATG	2 cut(s)	116, 223
BtsIMutI	CAGTG	1 cut(s)	523
CfoI	GCGC	1 cut(s)	205
Cfr42I	CCGCGG	1 cut(s)	231
CspCI	CAANNNNNGTGG	2 cut(s)	452, 487
CviAII	CATG	2 cut(s)	59, 308
DdeI	CTNAG	3 cut(s)	317, 378, 446
DpnI	GATC	1 cut(s)	21
DpnII	GATC	1 cut(s)	19
EaeI	YGGCCR	1 cut(s)	231
Eco147I	AGGCCT	2 cut(s)	87, 124
Eco88I	CYCGRG	1 cut(s)	493
EcoT22I	ATGCAT	1 cut(s)	116
Esp3I	CGTCTC	2 cut(s)	358, 392
FaeI	CATG	2 cut(s)	62, 311
FaiI	YATR	8 cut(s)	60, 116, 213, 309, 402, 425, 506, 533
FaqI	GGGAC	1 cut(s)	128
FatI	CATG	2 cut(s)	58, 307
FauI	CCCGC	1 cut(s)	235
Fnu4HI	GCNGC	6 cut(s)	159, 162, 231, 291, 301, 396
FokI	GGATG	2 cut(s)	123, 210
Fsp4HI	GCNGC	6 cut(s)	159, 162, 231, 291, 301, 396
FspBI	CTAG	2 cut(s)	138, 165
GlaI	GCGC	1 cut(s)	204
GluI	GCNGC	6 cut(s)	159, 162, 231, 291, 301, 396
GsaI	CCCAGC	1 cut(s)	222
HaeIII	GGCC	4 cut(s)	28, 87, 124, 233
HapII	CCGG	1 cut(s)	245
HhaI	GCGC	1 cut(s)	205
Hin1II	CATG	2 cut(s)	62, 311
Hin6I	GCGC	1 cut(s)	203
HinP1I	GCGC	1 cut(s)	203
HincII	GTYRAC	1 cut(s)	415
HindII	GTYRAC	1 cut(s)	415
HinfI	GANTC	2 cut(s)	96, 273
HpaII	CCGG	1 cut(s)	245
HphI	GGTGA	4 cut(s)	181, 442, 524, 541
Hpy166II	GTNNAC	3 cut(s)	100, 256, 415
Hpy188I	TCNGA	2 cut(s)	95, 453
Hpy188III	TCNNGA	1 cut(s)	493
Hpy8I	GTNNAC	3 cut(s)	100, 256, 415
HpyAV	CCTTC	3 cut(s)	25, 77, 135
HpyCH4III	ACNGT	4 cut(s)	266, 368, 386, 518
HpyCH4V	TGCA	5 cut(s)	114, 150, 158, 486, 521
HpyF10VI	GCNNNNNNNGC	2 cut(s)	335, 533
HpyF3I	CTNAG	3 cut(s)	317, 378, 446
Hsp92II	CATG	2 cut(s)	62, 311
HspAI	GCGC	1 cut(s)	203
KspI	CCGCGG	1 cut(s)	231
Kzo9I	GATC	1 cut(s)	19
LmnI	GCTCC	1 cut(s)	297
LpnPI	CCDG	5 cut(s)	232, 258, 390, 405, 507
Lsp1109I	GCAGC	5 cut(s)	170, 173, 277, 287, 382
LweI	GCATC	1 cut(s)	101
MaeI	CTAG	2 cut(s)	138, 165
MaeIII	GTNAC	2 cut(s)	512, 547
MalI	GATC	1 cut(s)	21
MboI	GATC	1 cut(s)	19
MboII	GAAGA	2 cut(s)	26, 86
MluCI	AATT	5 cut(s)	78, 129, 185, 361, 565
MlyI	GAGTC	1 cut(s)	105
MnlI	CCTC	5 cut(s)	56, 251, 263, 326, 500
Mph1103I	ATGCAT	1 cut(s)	116
MseI	TTAA	3 cut(s)	360, 476, 568
MslI	CAYNNNNRTG	3 cut(s)	57, 63, 105
MspA1I	CMGCKG	1 cut(s)	230
MspI	CCGG	1 cut(s)	245
MspR9I	CCNGG	1 cut(s)	245
MvnI	CGCG	2 cut(s)	205, 230
MwoI	GCNNNNNNNGC	2 cut(s)	335, 533
NciI	CCSGG	1 cut(s)	245
NdeII	GATC	1 cut(s)	19
NlaIII	CATG	2 cut(s)	62, 311
NmuCI	GTSAC	2 cut(s)	512, 547
NsiI	ATGCAT	1 cut(s)	116
PaeR7I	CTCGAG	1 cut(s)	493
PceI	AGGCCT	2 cut(s)	87, 124
PfeI	GAWTC	1 cut(s)	273
PflMI	CCANNNNNTGG	1 cut(s)	198
PkrI	GCNGC	6 cut(s)	160, 163, 232, 292, 302, 397
PleI	GAGTC	1 cut(s)	104
PpsI	GAGTC	1 cut(s)	104
PspFI	CCCAGC	1 cut(s)	218
PstI	CTGCAG	1 cut(s)	160
RseI	CAYNNNNRTG	3 cut(s)	57, 63, 105
SacII	CCGCGG	1 cut(s)	231
SaqAI	TTAA	3 cut(s)	360, 476, 568
SatI	GCNGC	6 cut(s)	159, 162, 231, 291, 301, 396
Sau3AI	GATC	1 cut(s)	19
SchI	GAGTC	1 cut(s)	105
ScrFI	CCNGG	1 cut(s)	245
SfaNI	GCATC	1 cut(s)	101
SfcI	CTRYAG	1 cut(s)	156
Sfr274I	CTCGAG	1 cut(s)	493
Sfr303I	CCGCGG	1 cut(s)	231
SgrBI	CCGCGG	1 cut(s)	231
SlaI	CTCGAG	1 cut(s)	493
SmiMI	CAYNNNNRTG	3 cut(s)	57, 63, 105
SmlI	CTYRAG	1 cut(s)	493
SmoI	CTYRAG	1 cut(s)	493
Sse9I	AATT	5 cut(s)	78, 129, 185, 361, 565
SseBI	AGGCCT	2 cut(s)	87, 124
SsiI	CCGC	2 cut(s)	228, 230
SspI	AATATT	1 cut(s)	544
SspMI	CTAG	2 cut(s)	138, 165
StuI	AGGCCT	2 cut(s)	87, 124
StyD4I	CCNGG	1 cut(s)	243
TaaI	ACNGT	4 cut(s)	266, 368, 386, 518
TaqI	TCGA	2 cut(s)	18, 494
TasI	AATT	5 cut(s)	78, 129, 185, 361, 565
TauI	GCSGC	1 cut(s)	233
TfiI	GAWTC	1 cut(s)	273
Tru1I	TTAA	3 cut(s)	360, 476, 568
Tru9I	TTAA	3 cut(s)	360, 476, 568
TscAI	CASTG	1 cut(s)	523
TseFI	GTSAC	2 cut(s)	512, 547
TseI	GCWGC	5 cut(s)	158, 161, 290, 300, 395
Tsp45I	GTSAC	2 cut(s)	512, 547
TspDTI	ATGAA	1 cut(s)	493
TspRI	CASTG	1 cut(s)	523
Van91I	CCANNNNNTGG	1 cut(s)	198
XapI	RAATTY	1 cut(s)	185
XhoI	CTCGAG	1 cut(s)	493
XspI	CTAG	2 cut(s)	138, 165
Zsp2I	ATGCAT	1 cut(s)	116

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.