Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb4

Orthogroup ID

OG0005183

Physical Location & Seq

Genomic Coordinates Forward (+)

32288981 .. 32291537

Gene Structure 2557 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_4g34600.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1527 bp

ATGGCTAAACTCATCTTGATTTTCCTTGGTTATAGTCAAATTAAGTATAGCCAAGTACCACCCCTTTTGATATTAGTCTTTGTGTTCCTCACTGCCTTGAATTTTGGTTTCTCACAATCCCCTAGTGCAGTATGTGTCCTTGATATTCAACAATCTTCATCTTGGAGTAGCTCAAATTGTGACGCAGGTACTTGGGGAGGGTTTGTCAGTAATTGTAATTGTGGAGCAGCTTTCGATGACTACCTATCTGCCTTGGGACACAGAGCAAACCACACTGCAAGACAGCTCTTCTTAAATTCAACAGGGCAAGAAACTTGCTTAGAGGGGATGAAGAGTAACAAAAGTGATGTTTTCAGTTGTGGAATCCAGAAGCTAACAAGTGGAGGCGGTGGTTGCTCTGACTATACTAAACTAGATGTTGTTCATAACCTAGGTAGCACATTGCAAGATTTAGATGAAGACTGTAGATCTCTCGGTACAGCTGGAATATATGATCAGGCTTGCGGTGCTTGTTTGCGAAGGTGGGAAGAGATTGTTGCATCATCACATAGTAGGGAGTCATCAAAACTTGAAGCCAATATATGTGGTTTTGCAGTTCTGTTGTCTTTAACAAGCAACAGGATTCATGATAAGAATTGGGTTCAAGCAATTTATCAATGCCTTGGAAATCAGATATTTACAGATTTAAGAGATCAGCGGCACACTGGATTAAAAAGCAGGTTTCTAAAACTGAGCACAGGAATTACTGTAATGTTACTTATTGCTATGTGGACCTTGTGCAAGAAAAAGAAGCCAGATATCTTTTCCACTGCAAAAGATGAGAAAGAAGATGCACCATATGATTCACTGACTCAAGAATCCAGCCTCAAAATATCAACTAAGCACATTTATGCAGCAACCAACAATTTGAATGCATCGAACTTCATTGGCCAAGGTGGAGCTGGAAAAGTATACAAAGGTGTACTCTTAAATGGGCTTGAAGTAGCAGTCAAGCACATAATCAACGATGGATATGTTTCCATCGAGACATTTGTAAGAGAAGTGACAAGCCTTTCACATGTTAGACATCCAAACCTTGTAGCATTACTTGGCCATTGCGAGGATACAGAAGAGTGTTTCCTGGTGTATGAACTGTGCCACAATGGGAACCTCTCGGAGTGGCTATTTGGGAAAGATAGAAGTCTACCATGGATTCAGAGACTTGAGATTGCAATTGACAGTGCAAGGGGTCTTTGGTTTCTTCATACTTTTCAGGGAGGCTGCATTGTTCACCGTGATGTCAAGGCAAGAGGTCTCACAAGAGGCGGTGATGTCATACAGTTTGCTGATCCTAAACTTAATGGGGAGTACTCAGTAGTAGCCTTTGAGCTTATATTCAAACTAGCTTTGTCATGCACAGGACTAAAGCAACAAAGACCACGCATGGAGGAGGTGGTATCGAGACTAGAAAAGGCATTACACATCTCAACTCAAATGGAGTCATTTCTGCCTGCTGGGACCAATCAAGACTTGAAATCGAAGAAATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004675 GO:0004888 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0007166 GO:0007167 GO:0007178 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019199 GO:0019538 GO:0023052 GO:0036211 GO:0038023 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0060089 GO:0065007 GO:0071704 GO:0071944 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pkinase Pkinase_Tyr

Protein Analysis

509

Amino Acids

56.08

Weight (kDa)

7.19

Isoelectric Point (pI)

39.76

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SPARK	PF19160	41 - 181	6.4e-08	SPARK
PK_Tyr_Ser-Thr	PF07714	306 - 443	6.7e-22	Protein tyrosine and serine/threonine kinase
Pkinase	PF00069	306 - 429	7.7e-18	Protein kinase domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005183)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g27000 FvH4_4g34600
malus_domestica	MD09G1035700.v1.1 MD13G1090700.v1.1 MD13G1091000.v1.1
prunus_persica	Prupe.1G254900_v2.0.a1 Prupe.3G282300_v2.0.a1
pyrus_communis	pycom16g07810
rosa_chinensis	RchiOBHm_Chr2g0170941 RchiOBHm_Chr4g0443971
rosa_laevigata	RLG00000005871 RLG00000021994
rosa_multiflora	Rmu_sc0010716.1_g000005 Rmu_sc0025148.1_g000001 Rmu_sc0027702.1_g000001 Rmu_sc0029481.1_g000001
rosa_roxburghii	Rroxscaffold_2G00080960 Rroxscaffold_5G00384520
rosa_rugosa	Rorug02G0552500 Rorug04G0348600
rosa_samantha	Rh2AG625300 Rh2BG636100 Rh2CG604600 Rh2DG647700 Rh4AG409300 Rh4BG420400 Rh4CG434400 Rh4DG415400
rosa_wichuraiana	Rw2G051790 Rw4G035160

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	2 cut(s)	176, 708
AccI	GTMKAC	2 cut(s)	951, 1183
AciI	CCGC	4 cut(s)	387, 504, 697, 1305
AclWI	GGATC	1 cut(s)	1322
AcoI	YGGCCR	2 cut(s)	928, 1090
AcsI	RAATTY	2 cut(s)	100, 295
AfaI	GTAC	5 cut(s)	57, 190, 478, 963, 1349
AfiI	CCNNNNNNNGG	1 cut(s)	1099
AflIII	ACRYGT	1 cut(s)	1057
AgsI	TTSAA	9 cut(s)	100, 149, 300, 572, 644, 910, 980, 1378, 1513
AjnI	CCWGG	1 cut(s)	1119
AluBI	AGCT	8 cut(s)	171, 230, 286, 373, 482, 941, 1369, 1385
AluI	AGCT	8 cut(s)	171, 230, 286, 373, 482, 941, 1369, 1385
Alw21I	GWGCWC	1 cut(s)	737
Alw26I	GTCTC	4 cut(s)	1019, 1192, 1298, 1435
AlwI	GGATC	1 cut(s)	1322
AoxI	GGCC	2 cut(s)	928, 1090
ApeKI	GCWGC	3 cut(s)	227, 893, 1260
ApoI	RAATTY	2 cut(s)	100, 295
AspA2I	CCTAGG	1 cut(s)	430
AspS9I	GGNCC	2 cut(s)	771, 1497
AsuHPI	GGTGA	2 cut(s)	1262, 1319
AvaII	GGWCC	2 cut(s)	771, 1497
AvrII	CCTAGG	1 cut(s)	430
BalI	TGGCCA	2 cut(s)	930, 1092
BbsI	GAAGAC	1 cut(s)	465
Bbv12I	GWGCWC	1 cut(s)	737
BbvI	GCAGC	3 cut(s)	239, 905, 1247
BccI	CCATC	2 cut(s)	1001, 1028
BciT130I	CCWGG	1 cut(s)	1121
BciVI	GTATCC	1 cut(s)	1096
BclI	TGATCA	1 cut(s)	493
BcoDI	GTCTC	4 cut(s)	1019, 1192, 1298, 1435
BfaI	CTAG	5 cut(s)	123, 413, 431, 1382, 1445
BfmI	CTRYAG	1 cut(s)	463
BfuAI	ACCTGC	2 cut(s)	176, 708
BfuI	GTATCC	1 cut(s)	1096
BglII	AGATCT	1 cut(s)	467
BisI	GCNGC	4 cut(s)	228, 698, 894, 1261
BlnI	CCTAGG	1 cut(s)	430
BlsI	GCNGC	4 cut(s)	229, 699, 895, 1262
BmcAI	AGTACT	1 cut(s)	1349
Bme1390I	CCNGG	1 cut(s)	1121
Bme18I	GGWCC	2 cut(s)	771, 1497
BmgT120I	GGNCC	2 cut(s)	771, 1497
BmiI	GGNNCC	2 cut(s)	1148, 1498
BmrFI	CCNGG	1 cut(s)	1121
BmsI	GCATC	3 cut(s)	548, 820, 923
BpiI	GAAGAC	1 cut(s)	465
BpuEI	CTTGAG	2 cut(s)	837, 1223
BsaI	GGTCTC	1 cut(s)	1298
BsaJI	CCNNGG	6 cut(s)	25, 252, 430, 661, 931, 1187
BsaXI	ACNNNNNCTCC	2 cut(s)	189, 219
Bsc4I	CCNNNNNNNGG	1 cut(s)	1099
Bse1I	ACTGG	1 cut(s)	709
Bse3DI	GCAATG	2 cut(s)	440, 1093
BseBI	CCWGG	1 cut(s)	1121
BseDI	CCNNGG	6 cut(s)	25, 252, 430, 661, 931, 1187
BseGI	GGATG	2 cut(s)	333, 1066
BseLI	CCNNNNNNNGG	1 cut(s)	1099
BseMI	GCAATG	2 cut(s)	440, 1093
BseMII	CTCAG	2 cut(s)	722, 1365
BseNI	ACTGG	1 cut(s)	709
BseRI	GAGGAG	1 cut(s)	1442
BseXI	GCAGC	3 cut(s)	239, 905, 1247
BseYI	CCCAGC	1 cut(s)	1493
BsgI	GTGCAG	1 cut(s)	147
BshFI	GGCC	2 cut(s)	930, 1092
BsiHKAI	GWGCWC	1 cut(s)	737
BslFI	GGGAC	2 cut(s)	270, 1510
BslI	CCNNNNNNNGG	1 cut(s)	1099
BsmAI	GTCTC	4 cut(s)	1019, 1192, 1298, 1435
BsmFI	GGGAC	2 cut(s)	270, 1510
BsmI	GAATGC	1 cut(s)	916
BsnI	GGCC	2 cut(s)	930, 1092
Bso31I	GGTCTC	1 cut(s)	1298
Bsp1286I	GDGCHC	1 cut(s)	737
Bsp143I	GATC	4 cut(s)	467, 493, 691, 1327
Bsp19I	CCATGG	1 cut(s)	1187
BspACI	CCGC	4 cut(s)	387, 504, 697, 1305
BspANI	GGCC	2 cut(s)	930, 1092
BspCNI	CTCAG	2 cut(s)	723, 1364
BspHI	TCATGA	1 cut(s)	625
BspLI	GGNNCC	2 cut(s)	1148, 1498
BspMI	ACCTGC	2 cut(s)	176, 708
BspPI	GGATC	1 cut(s)	1322
BspQI	GCTCTTC	1 cut(s)	293
BspTNI	GGTCTC	1 cut(s)	1298
BsrDI	GCAATG	2 cut(s)	440, 1093
BsrI	ACTGG	1 cut(s)	709
BssECI	CCNNGG	6 cut(s)	25, 252, 430, 661, 931, 1187
BssMI	GATC	4 cut(s)	467, 493, 691, 1327
BssNAI	GTATAC	1 cut(s)	952
BssT1I	CCWWGG	6 cut(s)	25, 252, 430, 661, 931, 1187
Bst1107I	GTATAC	1 cut(s)	952
Bst2UI	CCWGG	1 cut(s)	1121
Bst4CI	ACNGT	6 cut(s)	464, 748, 1134, 1220, 1274, 1320
Bst6I	CTCTTC	4 cut(s)	293, 326, 522, 1104
BstC8I	GCNNGC	2 cut(s)	502, 1491
BstDEI	CTNAG	4 cut(s)	319, 731, 879, 1351
BstDSI	CCRYGG	1 cut(s)	1187
BstF5I	GGATG	2 cut(s)	333, 1066
BstKTI	GATC	4 cut(s)	470, 496, 694, 1330
BstMAI	GTCTC	4 cut(s)	1019, 1192, 1298, 1435
BstMBI	GATC	4 cut(s)	467, 493, 691, 1327
BstMWI	GCNNNNNNNGC	2 cut(s)	393, 506
BstNI	CCWGG	1 cut(s)	1121
BstNSI	RCATGY	1 cut(s)	1061
BstSCI	CCNGG	1 cut(s)	1119
BstSFI	CTRYAG	1 cut(s)	463
BstV1I	GCAGC	3 cut(s)	239, 905, 1247
BstV2I	GAAGAC	1 cut(s)	465
BstX2I	RGATCY	1 cut(s)	467
BstYI	RGATCY	1 cut(s)	467
BstZ17I	GTATAC	1 cut(s)	952
BsuI	GTATCC	1 cut(s)	1096
BsuRI	GGCC	2 cut(s)	930, 1092
BtgI	CCRYGG	1 cut(s)	1187
BtsCI	GGATG	2 cut(s)	333, 1066
BtsI	GCAGTG	3 cut(s)	90, 273, 807
BtsIMutI	CAGTG	6 cut(s)	90, 273, 702, 807, 845, 1225
BveI	ACCTGC	2 cut(s)	176, 708
Cac8I	GCNNGC	2 cut(s)	502, 1491
CciI	TCATGA	1 cut(s)	625
Cfr13I	GGNCC	2 cut(s)	771, 1497
CseI	GACGC	1 cut(s)	191
Csp6I	GTAC	5 cut(s)	56, 189, 477, 962, 1348
CspCI	CAANNNNNGTGG	4 cut(s)	48, 83, 565, 600
CviAII	CATG	5 cut(s)	626, 1058, 1188, 1392, 1423
CviQI	GTAC	5 cut(s)	56, 189, 477, 962, 1348
DdeI	CTNAG	4 cut(s)	319, 731, 879, 1351
DpnI	GATC	4 cut(s)	469, 495, 693, 1329
DpnII	GATC	4 cut(s)	467, 493, 691, 1327
EaeI	YGGCCR	2 cut(s)	928, 1090
Eam1104I	CTCTTC	4 cut(s)	293, 326, 522, 1104
EarI	CTCTTC	4 cut(s)	293, 326, 522, 1104
Eco130I	CCWWGG	6 cut(s)	25, 252, 430, 661, 931, 1187
Eco31I	GGTCTC	1 cut(s)	1298
Eco32I	GATATC	1 cut(s)	799
Eco47I	GGWCC	2 cut(s)	771, 1497
EcoRII	CCWGG	1 cut(s)	1119
EcoRV	GATATC	1 cut(s)	799
EcoT14I	CCWWGG	6 cut(s)	25, 252, 430, 661, 931, 1187
EcoT22I	ATGCAT	1 cut(s)	916
ErhI	CCWWGG	6 cut(s)	25, 252, 430, 661, 931, 1187
FaeI	CATG	5 cut(s)	629, 1061, 1191, 1395, 1426
FaqI	GGGAC	2 cut(s)	270, 1510
FatI	CATG	5 cut(s)	625, 1057, 1187, 1391, 1422
FauNDI	CATATG	1 cut(s)	838
FbaI	TGATCA	1 cut(s)	493
FblI	GTMKAC	2 cut(s)	951, 1183
Fnu4HI	GCNGC	4 cut(s)	228, 698, 894, 1261
FokI	GGATG	2 cut(s)	340, 1053
Fsp4HI	GCNGC	4 cut(s)	228, 698, 894, 1261
FspBI	CTAG	5 cut(s)	123, 413, 431, 1382, 1445
GluI	GCNGC	4 cut(s)	228, 698, 894, 1261
GsaI	CCCAGC	1 cut(s)	1497
HaeIII	GGCC	2 cut(s)	930, 1092
HgaI	GACGC	1 cut(s)	191
Hin1II	CATG	5 cut(s)	629, 1061, 1191, 1395, 1426
HinfI	GANTC	8 cut(s)	363, 557, 622, 842, 850, 857, 1192, 1478
HphI	GGTGA	2 cut(s)	1262, 1319
Hpy166II	GTNNAC	5 cut(s)	771, 952, 962, 1184, 1270
Hpy188I	TCNGA	4 cut(s)	400, 672, 1156, 1197
Hpy188III	TCNNGA	7 cut(s)	16, 367, 626, 854, 1024, 1440, 1505
Hpy8I	GTNNAC	5 cut(s)	771, 952, 962, 1184, 1270
HpyAV	CCTTC	1 cut(s)	513
HpyCH4III	ACNGT	6 cut(s)	464, 748, 1134, 1220, 1274, 1320
HpyF10VI	GCNNNNNNNGC	2 cut(s)	393, 506
HpyF3I	CTNAG	4 cut(s)	319, 731, 879, 1351
Hsp92II	CATG	5 cut(s)	629, 1061, 1191, 1395, 1426
Ksp22I	TGATCA	1 cut(s)	493
Kzo9I	GATC	4 cut(s)	467, 493, 691, 1327
LguI	GCTCTTC	1 cut(s)	293
LmnI	GCTCC	2 cut(s)	224, 938
Lsp1109I	GCAGC	3 cut(s)	239, 905, 1247
LweI	GCATC	3 cut(s)	548, 820, 923
MaeI	CTAG	5 cut(s)	123, 413, 431, 1382, 1445
MaeIII	GTNAC	4 cut(s)	179, 335, 753, 1042
MalI	GATC	4 cut(s)	469, 495, 693, 1329
MboI	GATC	4 cut(s)	467, 493, 691, 1327
MboII	GAAGA	8 cut(s)	147, 280, 343, 470, 539, 839, 1121, 1232
MfeI	CAATTG	1 cut(s)	1212
MflI	RGATCY	1 cut(s)	467
MhlI	GDGCHC	1 cut(s)	737
MlsI	TGGCCA	2 cut(s)	930, 1092
MluNI	TGGCCA	2 cut(s)	930, 1092
MlyI	GAGTC	3 cut(s)	566, 844, 1487
Mox20I	TGGCCA	2 cut(s)	930, 1092
Mph1103I	ATGCAT	1 cut(s)	916
MscI	TGGCCA	2 cut(s)	930, 1092
MseI	TTAA	7 cut(s)	42, 293, 608, 686, 710, 968, 1338
MslI	CAYNNNNRTG	2 cut(s)	888, 1275
Msp20I	TGGCCA	2 cut(s)	930, 1092
MspA1I	CMGCKG	2 cut(s)	482, 697
MspR9I	CCNGG	1 cut(s)	1121
MunI	CAATTG	1 cut(s)	1212
Mva1269I	GAATGC	1 cut(s)	916
MvaI	CCWGG	1 cut(s)	1121
MwoI	GCNNNNNNNGC	2 cut(s)	393, 506
NcoI	CCATGG	1 cut(s)	1187
NdeI	CATATG	1 cut(s)	838
NdeII	GATC	4 cut(s)	467, 493, 691, 1327
NlaIII	CATG	5 cut(s)	629, 1061, 1191, 1395, 1426
NlaIV	GGNNCC	2 cut(s)	1148, 1498
NmuCI	GTSAC	2 cut(s)	179, 1042
NsiI	ATGCAT	1 cut(s)	916
NspI	RCATGY	1 cut(s)	1061
PagI	TCATGA	1 cut(s)	625
PciI	ACATGT	1 cut(s)	1057
PciSI	GCTCTTC	1 cut(s)	293
PctI	GAATGC	1 cut(s)	916
PfeI	GAWTC	5 cut(s)	363, 622, 842, 857, 1192
PkrI	GCNGC	4 cut(s)	229, 699, 895, 1262
PleI	GAGTC	3 cut(s)	565, 844, 1486
PpsI	GAGTC	3 cut(s)	565, 844, 1486
PscI	ACATGT	1 cut(s)	1057
Psp6I	CCWGG	1 cut(s)	1119
PspFI	CCCAGC	1 cut(s)	1493
PspGI	CCWGG	1 cut(s)	1119
PspN4I	GGNNCC	2 cut(s)	1148, 1498
PspPI	GGNCC	2 cut(s)	771, 1497
PsuI	RGATCY	1 cut(s)	467
PvuII	CAGCTG	1 cut(s)	482
RsaI	GTAC	5 cut(s)	57, 190, 478, 963, 1349
RsaNI	GTAC	5 cut(s)	56, 189, 477, 962, 1348
RseI	CAYNNNNRTG	2 cut(s)	888, 1275
SapI	GCTCTTC	1 cut(s)	293
SaqAI	TTAA	7 cut(s)	42, 293, 608, 686, 710, 968, 1338
SatI	GCNGC	4 cut(s)	228, 698, 894, 1261
Sau3AI	GATC	4 cut(s)	467, 493, 691, 1327
Sau96I	GGNCC	2 cut(s)	771, 1497
ScaI	AGTACT	1 cut(s)	1349
SchI	GAGTC	3 cut(s)	566, 844, 1487
ScrFI	CCNGG	1 cut(s)	1121
SduI	GDGCHC	1 cut(s)	737
SfaNI	GCATC	3 cut(s)	548, 820, 923
SfcI	CTRYAG	1 cut(s)	463
SinI	GGWCC	2 cut(s)	771, 1497
SmiMI	CAYNNNNRTG	2 cut(s)	888, 1275
SmlI	CTYRAG	2 cut(s)	852, 1202
SmoI	CTYRAG	2 cut(s)	852, 1202
SsiI	CCGC	4 cut(s)	387, 504, 697, 1305
SspMI	CTAG	5 cut(s)	123, 413, 431, 1382, 1445
StyD4I	CCNGG	1 cut(s)	1119
StyI	CCWWGG	6 cut(s)	25, 252, 430, 661, 931, 1187
TaaI	ACNGT	6 cut(s)	464, 748, 1134, 1220, 1274, 1320
TaqI	TCGA	5 cut(s)	234, 917, 1023, 1439, 1517
TatI	WGTACW	2 cut(s)	961, 1347
TauI	GCSGC	1 cut(s)	700
TfiI	GAWTC	5 cut(s)	363, 622, 842, 857, 1192
Tru1I	TTAA	7 cut(s)	42, 293, 608, 686, 710, 968, 1338
Tru9I	TTAA	7 cut(s)	42, 293, 608, 686, 710, 968, 1338
TscAI	CASTG	6 cut(s)	97, 280, 709, 814, 852, 1225
TseFI	GTSAC	2 cut(s)	179, 1042
TseI	GCWGC	3 cut(s)	227, 893, 1260
Tsp45I	GTSAC	2 cut(s)	179, 1042
TspDTI	ATGAA	8 cut(s)	147, 344, 413, 471, 614, 913, 1143, 1232
TspRI	CASTG	6 cut(s)	97, 280, 709, 814, 852, 1225
VpaK11BI	GGWCC	2 cut(s)	771, 1497
XapI	RAATTY	2 cut(s)	100, 295
XceI	RCATGY	1 cut(s)	1061
XcmI	CCANNNNNNNNNTGG	1 cut(s)	938
XmaJI	CCTAGG	1 cut(s)	430
XmiI	GTMKAC	2 cut(s)	951, 1183
XspI	CTAG	5 cut(s)	123, 413, 431, 1382, 1445
ZrmI	AGTACT	1 cut(s)	1349
Zsp2I	ATGCAT	1 cut(s)	916

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.