Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000002

Orthogroup ID

OG0005183

Physical Location & Seq

Genomic Coordinates Forward (+)

3944078 .. 3946541

Gene Structure 2464 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_2G00080960.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1584 bp

ATGACTGAGCTTCTAAAGCAATCTAGTATTGTCCTCATCTTCATACTGGTCACCACCATCAGCTTTGCAGTCGCTCAGCCTCCTCCGTCGAACTGTAGCCTTCATTTTGATGATGTTCCATCCAATTCAAGTTGTGGAAATGGAGACTGGGGAGGGTTTCTGCACAATAGCTGCTGTGCAACAATATTTGACGAGTACCTCTACGCATTGGGGCAGCGAGCAAACCAAACAGGAAACATATTTCTGGACTCTACCGAGCAGCGAAATTGCCTTGATGTCATGCAAAAATTTCAGAAGAATGTGTTTGGCTGTGGGTTTGAGCAGCTGACTAGTGGTGCAGGTGGCTGCTCTGACTTCTCTATTGGTGATGTTACTAGTAAGTTCGGAGACAAGTTGAAAAGTTTAGATGAGAAATGTAACATTCAGAGTTCTGATGGATGTAGTTCCTGTGCTAAGAGTTGGGGAAATATAAGAGCATTGCCCTCATGGTCCTCCGATCCACAGTCTATTAAGGCTGAAACACAAGTTTGCAGGTTTGCAGTTCTGGTGACATACTCAAGGACTAAAATCCAAGATAAAGACCATCTCCTTACAGTTTATAAGTGCCTTGAGGCACAAAAGTATGCAGCATTCAAGGATGTAATTTTTAAGGAGTCCGGCTGTCCAAAAATTCCGATCAAGGAAGTGTTATATGCTACAGACAATCTAAGCCCAGTACATTTCCTTGGTGAAGGAACTGCAGGAAAGGTTTATAGAGGCATACTGTCGAATAATCAGCCAGTAGCAATTAAGCACATTATCGATGATGAAAATGTGGAGTCTTTTGCCAGAGAATTTACAAGCTTATCACACATCAGACACCCCAACCTTGTTACTTTGCTTGGTTACTGTCTGCAGGAAGATGAGTGTTTCCTTGTGTATGAGCTTTGTCCAAATGGGAACCTCTCAGAATGGCTTTTCGGTAAAGATAAGTGCCTGTCCTGGATCCAGAGGCTTGAGATTGCAATTGATAGCGCTCAAGGTCTATTGTTTCTCCACACGTATCCAGAAGGTTGCATTGTTCATCGTGACATCAAGCCAACAAACATTCTCCTTGGGGACAATTTTGAAGCCAAGCTATCGGACTTTGGACTATCTAAGATCATTGAACTGGGTGAAACCTATGTGAGTTCAGAAGTGAGAGGAACTTTTGGTTATGTTGATCCTGACTACCAGAGAAACCACCATGTAAATTCTTCTGGAGATGTCTACAGCTTTGGAATTGTACTTCTACAAATCCTATCAGGAAAGAGAGTTATCAATATGAATCTGAATACACCACTGCCATTAAATAAAATGGCAAAAGGCCTTAACAGAGCTGGCAGCATCAATGAATTTGCCGATCCTAAACTCGATGGGGAATACTCAGCAGAAGCTTTCAATCTCACACTTCAGCTGGCTCTGTCATGCACAGAACTTAGACAAAAAAGACCATCCATGGAGCAAATTGTTGTCAGATTAGGACAGGCACATGACATATCAACACAGGCAAAGGCCTCTACTCCTGAAGTTTCAATAGACAGCTACCAAAGTTCAAATCCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pkinase

Protein Analysis

527

Amino Acids

58.28

Weight (kDa)

5.46

Isoelectric Point (pI)

39.37

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SPARK	PF19160	30 - 158	6e-13	SPARK
Pkinase	PF00069	240 - 497	1.2e-39	Protein kinase domain
PK_Tyr_Ser-Thr	PF07714	241 - 431	3.7e-39	Protein tyrosine and serine/threonine kinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005183)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g27000 FvH4_4g34600
malus_domestica	MD09G1035700.v1.1 MD13G1090700.v1.1 MD13G1091000.v1.1
prunus_persica	Prupe.1G254900_v2.0.a1 Prupe.3G282300_v2.0.a1
pyrus_communis	pycom16g07810
rosa_chinensis	RchiOBHm_Chr2g0170941 RchiOBHm_Chr4g0443971
rosa_laevigata	RLG00000005871 RLG00000021994
rosa_multiflora	Rmu_sc0010716.1_g000005 Rmu_sc0025148.1_g000001 Rmu_sc0027702.1_g000001 Rmu_sc0029481.1_g000001
rosa_roxburghii	Rroxscaffold_2G00080960 Rroxscaffold_5G00384520
rosa_rugosa	Rorug02G0552500 Rorug04G0348600
rosa_samantha	Rh2AG625300 Rh2BG636100 Rh2CG604600 Rh2DG647700 Rh4AG409300 Rh4BG420400 Rh4CG434400 Rh4DG415400
rosa_wichuraiana	Rw2G051790 Rw4G035160

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	600
AarI	CACCTGC	1 cut(s)	329
Acc36I	ACCTGC	2 cut(s)	329, 522
AccI	GTMKAC	1 cut(s)	1248
AclWI	GGATC	5 cut(s)	491, 979, 992, 1196, 1376
AcsI	RAATTY	5 cut(s)	287, 669, 833, 1231, 1373
AcuI	CTGAAG	2 cut(s)	1415, 1566
AfaI	GTAC	3 cut(s)	197, 717, 1266
AfeI	AGCGCT	1 cut(s)	1015
AflIII	ACRYGT	1 cut(s)	1038
AgsI	TTSAA	8 cut(s)	129, 397, 634, 1109, 1148, 1420, 1554, 1575
AhlI	ACTAGT	2 cut(s)	329, 374
AjnI	CCWGG	1 cut(s)	980
Alw26I	GTCTC	2 cut(s)	138, 381
AlwI	GGATC	5 cut(s)	491, 979, 992, 1196, 1376
Aor51HI	AGCGCT	1 cut(s)	1015
AoxI	GGCC	2 cut(s)	1345, 1533
ApeKI	GCWGC	7 cut(s)	171, 214, 259, 322, 345, 626, 1362
ApoI	RAATTY	5 cut(s)	287, 669, 833, 1231, 1373
AspLEI	GCGC	1 cut(s)	1016
AspS9I	GGNCC	1 cut(s)	489
AsuHPI	GGTGA	5 cut(s)	43, 377, 559, 740, 1166
AvaII	GGWCC	1 cut(s)	489
BamHI	GGATCC	1 cut(s)	984
BbvI	GCAGC	7 cut(s)	158, 226, 271, 332, 334, 638, 1374
BccI	CCATC	6 cut(s)	65, 127, 428, 591, 1388, 1480
BciT130I	CCWGG	1 cut(s)	982
BciVI	GTATCC	1 cut(s)	1053
BcoDI	GTCTC	2 cut(s)	138, 381
BcuI	ACTAGT	2 cut(s)	329, 374
BfaI	CTAG	3 cut(s)	24, 330, 375
BfmI	CTRYAG	5 cut(s)	94, 696, 738, 893, 1249
BfoI	RGCGCY	1 cut(s)	1017
BfuAI	ACCTGC	2 cut(s)	329, 522
BfuI	GTATCC	1 cut(s)	1053
BisI	GCNGC	7 cut(s)	172, 215, 260, 323, 346, 627, 1363
BlpI	GCTNAGC	1 cut(s)	75
BlsI	GCNGC	7 cut(s)	173, 216, 261, 324, 347, 628, 1364
Bme1390I	CCNGG	1 cut(s)	982
Bme18I	GGWCC	1 cut(s)	489
BmgT120I	GGNCC	1 cut(s)	489
BmiI	GGNNCC	2 cut(s)	941, 986
BmrFI	CCNGG	1 cut(s)	982
BmrI	ACTGGG	3 cut(s)	157, 707, 1160
BmsI	GCATC	1 cut(s)	1374
BmuI	ACTGGG	3 cut(s)	157, 707, 1160
BpmI	CTGGAG	1 cut(s)	1260
Bpu1102I	GCTNAGC	1 cut(s)	75
BpuEI	CTTGAG	4 cut(s)	541, 629, 1002, 1016
Bsa29I	ATCGAT	1 cut(s)	801
BsaAI	YACGTR	1 cut(s)	1041
BsaJI	CCNNGG	3 cut(s)	724, 1093, 1476
Bse1I	ACTGG	5 cut(s)	51, 152, 713, 779, 1155
Bse3DI	GCAATG	1 cut(s)	476
BseBI	CCWGG	1 cut(s)	982
BseCI	ATCGAT	1 cut(s)	801
BseDI	CCNNGG	3 cut(s)	724, 1093, 1476
BseGI	GGATG	4 cut(s)	119, 443, 643, 1472
BseMI	GCAATG	1 cut(s)	476
BseMII	CTCAG	3 cut(s)	89, 960, 1419
BseNI	ACTGG	5 cut(s)	51, 152, 713, 779, 1155
BseRI	GAGGAG	1 cut(s)	72
BseXI	GCAGC	7 cut(s)	158, 226, 271, 332, 334, 638, 1374
BsgI	GTGCAG	2 cut(s)	146, 357
BshFI	GGCC	2 cut(s)	1347, 1535
BshVI	ATCGAT	1 cut(s)	801
BsiSI	CCGG	1 cut(s)	657
BslFI	GGGAC	1 cut(s)	1112
BsmAI	GTCTC	2 cut(s)	138, 381
BsmFI	GGGAC	1 cut(s)	1112
BsmI	GAATGC	1 cut(s)	629
BsnI	GGCC	2 cut(s)	1347, 1535
Bsp143I	GATC	6 cut(s)	496, 675, 984, 1140, 1201, 1381
Bsp1720I	GCTNAGC	1 cut(s)	75
Bsp19I	CCATGG	1 cut(s)	1476
BspANI	GGCC	2 cut(s)	1347, 1535
BspCNI	CTCAG	3 cut(s)	88, 959, 1418
BspDI	ATCGAT	1 cut(s)	801
BspLI	GGNNCC	2 cut(s)	941, 986
BspMAI	CTGCAG	2 cut(s)	742, 897
BspMI	ACCTGC	2 cut(s)	329, 522
BspPI	GGATC	5 cut(s)	491, 979, 992, 1196, 1376
BsrDI	GCAATG	1 cut(s)	476
BsrI	ACTGG	5 cut(s)	51, 152, 713, 779, 1155
BssECI	CCNNGG	3 cut(s)	724, 1093, 1476
BssMI	GATC	6 cut(s)	496, 675, 984, 1140, 1201, 1381
BssT1I	CCWWGG	3 cut(s)	724, 1093, 1476
Bst2UI	CCWGG	1 cut(s)	982
Bst4CI	ACNGT	5 cut(s)	95, 504, 595, 765, 890
BstBAI	YACGTR	1 cut(s)	1041
BstC8I	GCNNGC	3 cut(s)	219, 1360, 1437
BstDEI	CTNAG	8 cut(s)	6, 75, 453, 707, 946, 1137, 1405, 1457
BstDSI	CCRYGG	1 cut(s)	1476
BstEII	GGTNACC	1 cut(s)	49
BstF5I	GGATG	4 cut(s)	119, 443, 643, 1472
BstH2I	RGCGCY	1 cut(s)	1017
BstHHI	GCGC	1 cut(s)	1016
BstKTI	GATC	6 cut(s)	499, 678, 987, 1143, 1204, 1384
BstMAI	GTCTC	2 cut(s)	138, 381
BstMBI	GATC	6 cut(s)	496, 675, 984, 1140, 1201, 1381
BstMWI	GCNNNNNNNGC	1 cut(s)	16
BstNI	CCWGG	1 cut(s)	982
BstPI	GGTNACC	1 cut(s)	49
BstSCI	CCNGG	1 cut(s)	980
BstSFI	CTRYAG	5 cut(s)	94, 696, 738, 893, 1249
BstV1I	GCAGC	7 cut(s)	158, 226, 271, 332, 334, 638, 1374
BstX2I	RGATCY	1 cut(s)	984
BstYI	RGATCY	1 cut(s)	984
Bsu15I	ATCGAT	1 cut(s)	801
BsuI	GTATCC	1 cut(s)	1053
BsuRI	GGCC	2 cut(s)	1347, 1535
BsuTUI	ATCGAT	1 cut(s)	801
BtgI	CCRYGG	1 cut(s)	1476
BtsCI	GGATG	4 cut(s)	119, 443, 643, 1472
BtsI	GCAGTG	1 cut(s)	1319
BtsIMutI	CAGTG	1 cut(s)	1319
BveI	ACCTGC	2 cut(s)	329, 522
Cac8I	GCNNGC	3 cut(s)	219, 1360, 1437
CfoI	GCGC	1 cut(s)	1016
Cfr13I	GGNCC	1 cut(s)	489
ClaI	ATCGAT	1 cut(s)	801
Csp6I	GTAC	3 cut(s)	196, 716, 1265
CviAII	CATG	7 cut(s)	280, 486, 1226, 1446, 1477, 1511, 1581
CviQI	GTAC	3 cut(s)	196, 716, 1265
DdeI	CTNAG	8 cut(s)	6, 75, 453, 707, 946, 1137, 1405, 1457
DpnI	GATC	6 cut(s)	498, 677, 986, 1142, 1203, 1383
DpnII	GATC	6 cut(s)	496, 675, 984, 1140, 1201, 1381
Eco130I	CCWWGG	3 cut(s)	724, 1093, 1476
Eco147I	AGGCCT	2 cut(s)	1347, 1535
Eco47I	GGWCC	1 cut(s)	489
Eco47III	AGCGCT	1 cut(s)	1015
Eco57I	CTGAAG	2 cut(s)	1415, 1566
Eco91I	GGTNACC	1 cut(s)	49
EcoO65I	GGTNACC	1 cut(s)	49
EcoRII	CCWGG	1 cut(s)	980
EcoT14I	CCWWGG	3 cut(s)	724, 1093, 1476
ErhI	CCWWGG	3 cut(s)	724, 1093, 1476
FaeI	CATG	7 cut(s)	283, 489, 1229, 1449, 1480, 1514, 1584
FaqI	GGGAC	1 cut(s)	1112
FatI	CATG	7 cut(s)	279, 485, 1225, 1445, 1476, 1510, 1580
FblI	GTMKAC	1 cut(s)	1248
Fnu4HI	GCNGC	7 cut(s)	172, 215, 260, 323, 346, 627, 1363
FokI	GGATG	4 cut(s)	106, 450, 650, 1459
Fsp4HI	GCNGC	7 cut(s)	172, 215, 260, 323, 346, 627, 1363
FspBI	CTAG	3 cut(s)	24, 330, 375
GlaI	GCGC	1 cut(s)	1015
GluI	GCNGC	7 cut(s)	172, 215, 260, 323, 346, 627, 1363
GsuI	CTGGAG	1 cut(s)	1260
HaeII	RGCGCY	1 cut(s)	1017
HaeIII	GGCC	2 cut(s)	1347, 1535
HapII	CCGG	1 cut(s)	657
HhaI	GCGC	1 cut(s)	1016
Hin1II	CATG	7 cut(s)	283, 489, 1229, 1449, 1480, 1514, 1584
Hin6I	GCGC	1 cut(s)	1014
HinP1I	GCGC	1 cut(s)	1014
HindIII	AAGCTT	2 cut(s)	841, 1413
HinfI	GANTC	4 cut(s)	248, 653, 818, 1306
HpaII	CCGG	1 cut(s)	657
HphI	GGTGA	5 cut(s)	43, 377, 559, 740, 1166
Hpy166II	GTNNAC	1 cut(s)	1249
Hpy188III	TCNNGA	8 cut(s)	245, 988, 1046, 1067, 1205, 1239, 1284, 1544
Hpy8I	GTNNAC	1 cut(s)	1249
Hpy99I	CGWCG	1 cut(s)	91
HpyAV	CCTTC	3 cut(s)	110, 725, 1043
HpyCH4III	ACNGT	5 cut(s)	95, 504, 595, 765, 890
HpyCH4IV	ACGT	1 cut(s)	1040
HpyF10VI	GCNNNNNNNGC	1 cut(s)	16
HpyF3I	CTNAG	8 cut(s)	6, 75, 453, 707, 946, 1137, 1405, 1457
HpySE526I	ACGT	1 cut(s)	1040
Hsp92II	CATG	7 cut(s)	283, 489, 1229, 1449, 1480, 1514, 1584
HspAI	GCGC	1 cut(s)	1014
Kzo9I	GATC	6 cut(s)	496, 675, 984, 1140, 1201, 1381
LmnI	GCTCC	1 cut(s)	1480
Lsp1109I	GCAGC	7 cut(s)	158, 226, 271, 332, 334, 638, 1374
LweI	GCATC	1 cut(s)	1374
MaeI	CTAG	3 cut(s)	24, 330, 375
MaeII	ACGT	1 cut(s)	1040
MaeIII	GTNAC	7 cut(s)	49, 370, 416, 547, 871, 884, 1067
MalI	GATC	6 cut(s)	498, 677, 986, 1142, 1203, 1383
MboI	GATC	6 cut(s)	496, 675, 984, 1140, 1201, 1381
MboII	GAAGA	4 cut(s)	31, 307, 911, 1227
MfeI	CAATTG	1 cut(s)	1005
MflI	RGATCY	1 cut(s)	984
MlyI	GAGTC	3 cut(s)	242, 662, 827
MseI	TTAA	5 cut(s)	510, 648, 789, 1328, 1350
MslI	CAYNNNNRTG	1 cut(s)	108
MspA1I	CMGCKG	2 cut(s)	325, 1435
MspI	CCGG	1 cut(s)	657
MspR9I	CCNGG	1 cut(s)	982
MunI	CAATTG	1 cut(s)	1005
Mva1269I	GAATGC	1 cut(s)	629
MvaI	CCWGG	1 cut(s)	982
MwoI	GCNNNNNNNGC	1 cut(s)	16
NcoI	CCATGG	1 cut(s)	1476
NdeII	GATC	6 cut(s)	496, 675, 984, 1140, 1201, 1381
NlaIII	CATG	7 cut(s)	283, 489, 1229, 1449, 1480, 1514, 1584
NlaIV	GGNNCC	2 cut(s)	941, 986
NmuCI	GTSAC	3 cut(s)	49, 547, 1067
PaqCI	CACCTGC	1 cut(s)	329
PceI	AGGCCT	2 cut(s)	1347, 1535
PctI	GAATGC	1 cut(s)	629
PfeI	GAWTC	1 cut(s)	1306
PfoI	TCCNGGA	1 cut(s)	980
PkrI	GCNGC	7 cut(s)	173, 216, 261, 324, 347, 628, 1364
PleI	GAGTC	3 cut(s)	242, 661, 826
PpsI	GAGTC	3 cut(s)	242, 661, 826
Ppu21I	YACGTR	1 cut(s)	1041
PsiI	TTATAA	1 cut(s)	600
Psp6I	CCWGG	1 cut(s)	980
PspEI	GGTNACC	1 cut(s)	49
PspGI	CCWGG	1 cut(s)	980
PspN4I	GGNNCC	2 cut(s)	941, 986
PspPI	GGNCC	1 cut(s)	489
PstI	CTGCAG	2 cut(s)	742, 897
PsuI	RGATCY	1 cut(s)	984
PvuII	CAGCTG	2 cut(s)	325, 1435
RsaI	GTAC	3 cut(s)	197, 717, 1266
RsaNI	GTAC	3 cut(s)	196, 716, 1265
RseI	CAYNNNNRTG	1 cut(s)	108
SaqAI	TTAA	5 cut(s)	510, 648, 789, 1328, 1350
SatI	GCNGC	7 cut(s)	172, 215, 260, 323, 346, 627, 1363
Sau3AI	GATC	6 cut(s)	496, 675, 984, 1140, 1201, 1381
Sau96I	GGNCC	1 cut(s)	489
SchI	GAGTC	3 cut(s)	242, 662, 827
ScrFI	CCNGG	1 cut(s)	982
SfaNI	GCATC	1 cut(s)	1374
SfcI	CTRYAG	5 cut(s)	94, 696, 738, 893, 1249
SinI	GGWCC	1 cut(s)	489
SmiMI	CAYNNNNRTG	1 cut(s)	108
SmlI	CTYRAG	4 cut(s)	556, 608, 995, 1017
SmoI	CTYRAG	4 cut(s)	556, 608, 995, 1017
SpeI	ACTAGT	2 cut(s)	329, 374
SseBI	AGGCCT	2 cut(s)	1347, 1535
SspI	AATATT	1 cut(s)	186
SspMI	CTAG	3 cut(s)	24, 330, 375
StuI	AGGCCT	2 cut(s)	1347, 1535
StyD4I	CCNGG	1 cut(s)	980
StyI	CCWWGG	3 cut(s)	724, 1093, 1476
TaaI	ACNGT	5 cut(s)	95, 504, 595, 765, 890
TaiI	ACGT	1 cut(s)	1043
TaqI	TCGA	4 cut(s)	89, 767, 801, 1392
TatI	WGTACW	2 cut(s)	715, 1264
TfiI	GAWTC	1 cut(s)	1306
Tru1I	TTAA	5 cut(s)	510, 648, 789, 1328, 1350
Tru9I	TTAA	5 cut(s)	510, 648, 789, 1328, 1350
TscAI	CASTG	1 cut(s)	1326
TseFI	GTSAC	3 cut(s)	49, 547, 1067
TseI	GCWGC	7 cut(s)	171, 214, 259, 322, 345, 626, 1362
Tsp45I	GTSAC	3 cut(s)	49, 547, 1067
TspDTI	ATGAA	6 cut(s)	31, 92, 822, 1052, 1319, 1386
TspGWI	ACGGA	1 cut(s)	75
TspRI	CASTG	1 cut(s)	1326
VpaK11BI	GGWCC	1 cut(s)	489
XapI	RAATTY	5 cut(s)	287, 669, 833, 1231, 1373
XmiI	GTMKAC	1 cut(s)	1248
XspI	CTAG	3 cut(s)	24, 330, 375

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.