Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0025148.1

Orthogroup ID

OG0005183

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 1908

Gene Structure 1908 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0025148.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1169 bp

atgatcaagccgggaagggtagaaaaataagcacacgtaaggcttcttccatcaacactgaaagtatcattggtttcttatccctaacacattacacttttaacatgaaagcaggtttattgatcctcatcggaggagcaataggtattatcatttcagtagtaacagctgcatacattttttccaagaaacgtaccaaaacaactcaaccaccagttgtcgccaaaaagacaactccatcgcccaaaaaagaagcagcattcaaggatgtaatttttaaggagtccggctgtccaaaaattcctatcaaggaagtgttatatgctacagacaatctaagcccagtacatttccttggtgaaggaactgctggaaaggtttatagaggtatactgtcgaataatcagccagtagcaattaagcacattatcgatgatgaaaatgtggagtcttttgccagagaatttacaagcttatcacacatcagacaccccaaccttgttactttgcttggttactgtctacaggaagatgagtgtttcattgtgtatgagctttgtccaaatgggaacctctcagaatggcttttcggtaaagataagtgcctgtcctggatccagaggcttgagattgcaattgatagcgctcaaggtctattgtttctccacacgtatccagaaggctgcattgttcatcgtgacatcaagccaacaaacattctccttggggacaattttgaagccaagctatcggactttggactatctaagatcattgaactgggtgaaacctatgtgagttcagaagtgagaggaacttttggttatgttgatcctgactaccagagaaaccaccatgtaaattcttctggagatgtctacagctttggaattgtgcttctacaaatcctatcaggaaagagggcaaaaggccttaacagaactggcagcatcaatgaatttgccgatcctaaactcgatggggaatactcagcagaagctttcaatctcacacttcagctggctctgtcatgcacagaacttagacaacaaagaccatccatggagcaaattgttgtcagattaggacaggcacatgacatatcaacacaggcaaaggcctctactcctgaagtttcaatagacagctaccaaagttcaaatccatga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pkinase

Protein Analysis

388

Amino Acids

42.79

Weight (kDa)

6.87

Isoelectric Point (pI)

33.65

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005183)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g27000 FvH4_4g34600
malus_domestica	MD09G1035700.v1.1 MD13G1090700.v1.1 MD13G1091000.v1.1
prunus_persica	Prupe.1G254900_v2.0.a1 Prupe.3G282300_v2.0.a1
pyrus_communis	pycom16g07810
rosa_chinensis	RchiOBHm_Chr2g0170941 RchiOBHm_Chr4g0443971
rosa_laevigata	RLG00000005871 RLG00000021994
rosa_multiflora	Rmu_sc0010716.1_g000005 Rmu_sc0025148.1_g000001 Rmu_sc0027702.1_g000001 Rmu_sc0029481.1_g000001
rosa_roxburghii	Rroxscaffold_2G00080960 Rroxscaffold_5G00384520
rosa_rugosa	Rorug02G0552500 Rorug04G0348600
rosa_samantha	Rh2AG625300 Rh2BG636100 Rh2CG604600 Rh2DG647700 Rh4AG409300 Rh4BG420400 Rh4CG434400 Rh4DG415400
rosa_wichuraiana	Rw2G051790 Rw4G035160

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	103
AccI	GTMKAC	3 cut(s)	390, 522, 878
AclWI	GGATC	5 cut(s)	117, 609, 622, 826, 961
AcsI	RAATTY	4 cut(s)	299, 463, 861, 958
AcuI	CTGAAG	2 cut(s)	1000, 1151
AfaI	GTAC	2 cut(s)	195, 347
AfeI	AGCGCT	1 cut(s)	645
AflIII	ACRYGT	2 cut(s)	34, 668
AgsI	TTSAA	6 cut(s)	264, 739, 778, 1005, 1139, 1160
AjnI	CCWGG	1 cut(s)	610
AjuI	GAANNNNNNNTTGG	2 cut(s)	53, 85
AluBI	AGCT	8 cut(s)	169, 473, 555, 747, 884, 1000, 1020, 1148
AluI	AGCT	8 cut(s)	169, 473, 555, 747, 884, 1000, 1020, 1148
AlwI	GGATC	5 cut(s)	117, 609, 622, 826, 961
Aor51HI	AGCGCT	1 cut(s)	645
AoxI	GGCC	2 cut(s)	930, 1118
ApeKI	GCWGC	4 cut(s)	169, 256, 683, 947
ApoI	RAATTY	4 cut(s)	299, 463, 861, 958
AspLEI	GCGC	1 cut(s)	646
AsuC2I	CCSGG	1 cut(s)	12
AsuHPI	GGTGA	2 cut(s)	370, 796
BamHI	GGATCC	1 cut(s)	614
BarI	GAAGNNNNNNTAC	2 cut(s)	30, 62
BbvI	GCAGC	4 cut(s)	156, 268, 670, 959
BccI	CCATC	4 cut(s)	58, 246, 973, 1065
BciT130I	CCWGG	1 cut(s)	612
BciVI	GTATCC	1 cut(s)	683
BclI	TGATCA	1 cut(s)	3
BcnI	CCSGG	1 cut(s)	12
BfmI	CTRYAG	3 cut(s)	326, 523, 879
BfoI	RGCGCY	1 cut(s)	647
BfuAI	ACCTGC	1 cut(s)	103
BfuI	GTATCC	1 cut(s)	683
BisI	GCNGC	4 cut(s)	170, 257, 684, 948
BlsI	GCNGC	4 cut(s)	171, 258, 685, 949
Bme1390I	CCNGG	2 cut(s)	12, 612
BmiI	GGNNCC	2 cut(s)	571, 616
BmrFI	CCNGG	2 cut(s)	12, 612
BmrI	ACTGGG	2 cut(s)	337, 790
BmsI	GCATC	1 cut(s)	959
BmuI	ACTGGG	2 cut(s)	337, 790
BpmI	CTGGAG	1 cut(s)	890
BpuEI	CTTGAG	2 cut(s)	632, 646
BpuMI	CCSGG	1 cut(s)	12
Bsa29I	ATCGAT	1 cut(s)	431
BsaAI	YACGTR	2 cut(s)	37, 671
BsaBI	GATNNNNATC	1 cut(s)	127
BsaJI	CCNNGG	3 cut(s)	354, 723, 1061
Bse1I	ACTGG	5 cut(s)	214, 343, 409, 785, 948
Bse8I	GATNNNNATC	1 cut(s)	127
BseBI	CCWGG	1 cut(s)	612
BseCI	ATCGAT	1 cut(s)	431
BseDI	CCNNGG	3 cut(s)	354, 723, 1061
BseGI	GGATG	2 cut(s)	273, 1057
BseJI	GATNNNNATC	1 cut(s)	127
BseMII	CTCAG	2 cut(s)	590, 1004
BseNI	ACTGG	5 cut(s)	214, 343, 409, 785, 948
BseRI	GAGGAG	1 cut(s)	149
BseXI	GCAGC	4 cut(s)	156, 268, 670, 959
BshFI	GGCC	2 cut(s)	932, 1120
BshVI	ATCGAT	1 cut(s)	431
BsiSI	CCGG	2 cut(s)	11, 287
BslFI	GGGAC	1 cut(s)	742
BsmFI	GGGAC	1 cut(s)	742
BsmI	GAATGC	1 cut(s)	259
BsnI	GGCC	2 cut(s)	932, 1120
Bsp143I	GATC	6 cut(s)	3, 122, 614, 770, 831, 966
Bsp19I	CCATGG	1 cut(s)	1061
BspANI	GGCC	2 cut(s)	932, 1120
BspCNI	CTCAG	2 cut(s)	589, 1003
BspDI	ATCGAT	1 cut(s)	431
BspLI	GGNNCC	2 cut(s)	571, 616
BspMI	ACCTGC	1 cut(s)	103
BspPI	GGATC	5 cut(s)	117, 609, 622, 826, 961
BsrI	ACTGG	5 cut(s)	214, 343, 409, 785, 948
BssECI	CCNNGG	3 cut(s)	354, 723, 1061
BssMI	GATC	6 cut(s)	3, 122, 614, 770, 831, 966
BssNAI	GTATAC	1 cut(s)	391
BssT1I	CCWWGG	3 cut(s)	354, 723, 1061
Bst1107I	GTATAC	1 cut(s)	391
Bst2UI	CCWGG	1 cut(s)	612
Bst4CI	ACNGT	2 cut(s)	395, 520
BstBAI	YACGTR	2 cut(s)	37, 671
BstC8I	GCNNGC	1 cut(s)	1022
BstDEI	CTNAG	5 cut(s)	337, 576, 767, 990, 1042
BstDSI	CCRYGG	1 cut(s)	1061
BstF5I	GGATG	2 cut(s)	273, 1057
BstH2I	RGCGCY	1 cut(s)	647
BstHHI	GCGC	1 cut(s)	646
BstKTI	GATC	6 cut(s)	6, 125, 617, 773, 834, 969
BstMBI	GATC	6 cut(s)	3, 122, 614, 770, 831, 966
BstNI	CCWGG	1 cut(s)	612
BstSCI	CCNGG	2 cut(s)	10, 610
BstSFI	CTRYAG	3 cut(s)	326, 523, 879
BstV1I	GCAGC	4 cut(s)	156, 268, 670, 959
BstX2I	RGATCY	1 cut(s)	614
BstYI	RGATCY	1 cut(s)	614
BstZ17I	GTATAC	1 cut(s)	391
Bsu15I	ATCGAT	1 cut(s)	431
BsuI	GTATCC	1 cut(s)	683
BsuRI	GGCC	2 cut(s)	932, 1120
BsuTUI	ATCGAT	1 cut(s)	431
BtgI	CCRYGG	1 cut(s)	1061
BtgZI	GCGATG	1 cut(s)	224
BtsCI	GGATG	2 cut(s)	273, 1057
BtsIMutI	CAGTG	1 cut(s)	56
BveI	ACCTGC	1 cut(s)	103
Cac8I	GCNNGC	1 cut(s)	1022
CfoI	GCGC	1 cut(s)	646
ClaI	ATCGAT	1 cut(s)	431
Csp6I	GTAC	2 cut(s)	194, 346
CviAII	CATG	6 cut(s)	105, 856, 1031, 1062, 1096, 1166
CviQI	GTAC	2 cut(s)	194, 346
DdeI	CTNAG	5 cut(s)	337, 576, 767, 990, 1042
DpnI	GATC	6 cut(s)	5, 124, 616, 772, 833, 968
DpnII	GATC	6 cut(s)	3, 122, 614, 770, 831, 966
Eco130I	CCWWGG	3 cut(s)	354, 723, 1061
Eco147I	AGGCCT	2 cut(s)	932, 1120
Eco47III	AGCGCT	1 cut(s)	645
Eco57I	CTGAAG	2 cut(s)	1000, 1151
EcoRII	CCWGG	1 cut(s)	610
EcoT14I	CCWWGG	3 cut(s)	354, 723, 1061
ErhI	CCWWGG	3 cut(s)	354, 723, 1061
FaeI	CATG	6 cut(s)	108, 859, 1034, 1065, 1099, 1169
FaqI	GGGAC	1 cut(s)	742
FatI	CATG	6 cut(s)	104, 855, 1030, 1061, 1095, 1165
FbaI	TGATCA	1 cut(s)	3
FblI	GTMKAC	3 cut(s)	390, 522, 878
Fnu4HI	GCNGC	4 cut(s)	170, 257, 684, 948
FokI	GGATG	2 cut(s)	280, 1044
Fsp4HI	GCNGC	4 cut(s)	170, 257, 684, 948
GlaI	GCGC	1 cut(s)	645
GluI	GCNGC	4 cut(s)	170, 257, 684, 948
GsuI	CTGGAG	1 cut(s)	890
HaeII	RGCGCY	1 cut(s)	647
HaeIII	GGCC	2 cut(s)	932, 1120
HapII	CCGG	2 cut(s)	11, 287
HhaI	GCGC	1 cut(s)	646
Hin1II	CATG	6 cut(s)	108, 859, 1034, 1065, 1099, 1169
Hin6I	GCGC	1 cut(s)	644
HinP1I	GCGC	1 cut(s)	644
HindIII	AAGCTT	2 cut(s)	471, 998
HinfI	GANTC	2 cut(s)	283, 448
HpaII	CCGG	2 cut(s)	11, 287
HphI	GGTGA	2 cut(s)	370, 796
Hpy166II	GTNNAC	3 cut(s)	391, 523, 879
Hpy188I	TCNGA	6 cut(s)	133, 487, 579, 753, 804, 1081
Hpy188III	TCNNGA	7 cut(s)	618, 676, 697, 835, 869, 914, 1129
Hpy8I	GTNNAC	3 cut(s)	391, 523, 879
HpyAV	CCTTC	3 cut(s)	9, 355, 673
HpyCH4III	ACNGT	2 cut(s)	395, 520
HpyCH4IV	ACGT	3 cut(s)	36, 192, 670
HpyCH4V	TGCA	4 cut(s)	172, 634, 686, 1034
HpyF3I	CTNAG	5 cut(s)	337, 576, 767, 990, 1042
HpySE526I	ACGT	3 cut(s)	36, 192, 670
Hsp92II	CATG	6 cut(s)	108, 859, 1034, 1065, 1099, 1169
HspAI	GCGC	1 cut(s)	644
Ksp22I	TGATCA	1 cut(s)	3
Kzo9I	GATC	6 cut(s)	3, 122, 614, 770, 831, 966
LmnI	GCTCC	2 cut(s)	136, 1065
Lsp1109I	GCAGC	4 cut(s)	156, 268, 670, 959
LweI	GCATC	1 cut(s)	959
MaeII	ACGT	3 cut(s)	36, 192, 670
MaeIII	GTNAC	4 cut(s)	162, 501, 514, 697
MalI	GATC	6 cut(s)	5, 124, 616, 772, 833, 968
MboI	GATC	6 cut(s)	3, 122, 614, 770, 831, 966
MboII	GAAGA	3 cut(s)	38, 541, 857
MfeI	CAATTG	1 cut(s)	635
MflI	RGATCY	1 cut(s)	614
MlyI	GAGTC	2 cut(s)	292, 457
MnlI	CCTC	8 cut(s)	127, 136, 379, 583, 614, 805, 914, 1131
MseI	TTAA	4 cut(s)	101, 278, 419, 935
MspA1I	CMGCKG	2 cut(s)	169, 1020
MspI	CCGG	2 cut(s)	11, 287
MspR9I	CCNGG	2 cut(s)	12, 612
MunI	CAATTG	1 cut(s)	635
Mva1269I	GAATGC	1 cut(s)	259
MvaI	CCWGG	1 cut(s)	612
NciI	CCSGG	1 cut(s)	12
NcoI	CCATGG	1 cut(s)	1061
NdeII	GATC	6 cut(s)	3, 122, 614, 770, 831, 966
NlaIII	CATG	6 cut(s)	108, 859, 1034, 1065, 1099, 1169
NlaIV	GGNNCC	2 cut(s)	571, 616
NmuCI	GTSAC	1 cut(s)	697
PceI	AGGCCT	2 cut(s)	932, 1120
PctI	GAATGC	1 cut(s)	259
PfoI	TCCNGGA	1 cut(s)	610
PkrI	GCNGC	4 cut(s)	171, 258, 685, 949
PleI	GAGTC	2 cut(s)	291, 456
PpsI	GAGTC	2 cut(s)	291, 456
Ppu21I	YACGTR	2 cut(s)	37, 671
Psp6I	CCWGG	1 cut(s)	610
PspGI	CCWGG	1 cut(s)	610
PspN4I	GGNNCC	2 cut(s)	571, 616
PsuI	RGATCY	1 cut(s)	614
PvuII	CAGCTG	2 cut(s)	169, 1020
RsaI	GTAC	2 cut(s)	195, 347
RsaNI	GTAC	2 cut(s)	194, 346
SaqAI	TTAA	4 cut(s)	101, 278, 419, 935
SatI	GCNGC	4 cut(s)	170, 257, 684, 948
Sau3AI	GATC	6 cut(s)	3, 122, 614, 770, 831, 966
SchI	GAGTC	2 cut(s)	292, 457
ScrFI	CCNGG	2 cut(s)	12, 612
SfaNI	GCATC	1 cut(s)	959
SfcI	CTRYAG	3 cut(s)	326, 523, 879
SmlI	CTYRAG	2 cut(s)	625, 647
SmoI	CTYRAG	2 cut(s)	625, 647
SseBI	AGGCCT	2 cut(s)	932, 1120
StuI	AGGCCT	2 cut(s)	932, 1120
StyD4I	CCNGG	2 cut(s)	10, 610
StyI	CCWWGG	3 cut(s)	354, 723, 1061
TaaI	ACNGT	2 cut(s)	395, 520
TaiI	ACGT	3 cut(s)	39, 195, 673
TaqI	TCGA	3 cut(s)	397, 431, 977
TatI	WGTACW	1 cut(s)	345
Tru1I	TTAA	4 cut(s)	101, 278, 419, 935
Tru9I	TTAA	4 cut(s)	101, 278, 419, 935
TscAI	CASTG	1 cut(s)	63
TseFI	GTSAC	1 cut(s)	697
TseI	GCWGC	4 cut(s)	169, 256, 683, 947
Tsp45I	GTSAC	1 cut(s)	697
TspDTI	ATGAA	5 cut(s)	121, 452, 531, 682, 971
TspRI	CASTG	1 cut(s)	63
XapI	RAATTY	4 cut(s)	299, 463, 861, 958
XmiI	GTMKAC	3 cut(s)	390, 522, 878

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.