Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0005183

Physical Location & Seq

Genomic Coordinates Reverse (-)

84689359 .. 84691825

Gene Structure 2467 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ53843

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1467 bp

ATGACTGAGCTTCTAAAGCAATCTAGTATTGTCCTCATCTTCATACTGGTCACCACCATCAGCTTTGCAGTCGCTCAGCCTCCTCCGTCGAACTGTAGCCTTCATTTTGATGATGTTCCATCCAATTCAAGTTGTGGAAATGGAGACTGGGGAGGGTTTCTGCACAATAGCTGCTGTGCAACAATATTTGACGAGTACCTCTACGCATTGGGGCAGCGAGCAAACCAAACAGGAAACATATTTCTGGACTCTACCCAGCAGCGGAATTGCCTTGATGTCATGCAAAAATTTCAGAAGAATGTGTTTGGCTGTGGGTTTGAGCAGCTGACTAGTGGTGCAGGTGGCTGCTCTGACTTCTCTATTGGTGATGTTACTAGTAAGTTCGGAGACAAGTTGAGAAGTTTAGATGAGAAATGTAACATTCAGAGTTCTGATGGATGTAGTTCCTGTGCTAAGAGTTGGGGAAATATAAGAGCAGTGCCCTCATGGTCCTCCGATCCACAGTCTATTAAGGCTGAAACACAAGTTTGCAGGTTTGCAGTTCTGGTGACATACTCAAGGACTAAAATCCAAGATAAAGACCATCTCCTTACAGTTTATAAGTGCCTTGAGGCACAAAAGTATGGAAAGGTTTATAGAGGTATACTGTCGAATAATCAGCCAGTAGCAATTAAGCACATTATCGATGATGAAAATGTGGAGTCTTTTGCCAGAGAATTTACAAGCTTATCACACATCAGACACCCCAACCTTGTTACTTTGCTTGGCTACTGTCTACAGGAAGATGAGTGTTTCATTGTGTATGAGCTTTGTCCAAATGGGAACCTCTCAGAATGGCTTTTCGGTAAAGATAAGTGCCTGTCCTGGATCCAGAGGCTTGAGATTGCAATTGATAGCGCTCAAGGTCTATTGTTTCTCCACACGTATCCAGAAGGCTGCATTGTTCATCGTGACATCAAGCCAACAAACATTCTCCTTGGGGACAATTTTGAAGCCAAGCTATCGGACTTTGGACTATCTAAGATCATTGAACTGGGTGAAACCTATGTGAGTTCAGAAGTGAGAGGAACTTTTGGTTATGTTGATCCTGACTACCAGAGAAACCACCATGTAAATTCTTCTGGAGATGTCTACAGCTTTGGAATTGTACTTCTACAAATCCTATCAGGAAAGAGGGTTATCAATATGAATCTGAACACACCACTGCCATTAAATAAAATGGCAAAAGGCCTTAACAGAACTGGCAGCATCAATGAATTTGCCGATCCTAAACTCGATGGGGAATACTCAGCAGAAGCTTTCAATCTCACACTTCAGCTGGCTCTGTCATGCACAGAACTTAGACAACAAAGACCATCCATGGAGCAAATTGTTGTCAGATTAGGACAGGCACATGACATATCAACACAGGCAAAGGCCTCTACTCCTGAAGTTTCAATAGACAGCTACCAAAGTTCAAATCCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pkinase

Protein Analysis

488

Amino Acids

54.14

Weight (kDa)

5.44

Isoelectric Point (pI)

40.35

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SPARK	PF19160	30 - 158	5.8e-13	SPARK
PK_Tyr_Ser-Thr	PF07714	199 - 393	3.2e-38	Protein tyrosine and serine/threonine kinase
Pkinase	PF00069	207 - 458	1e-36	Protein kinase domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005183)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g27000 FvH4_4g34600
malus_domestica	MD09G1035700.v1.1 MD13G1090700.v1.1 MD13G1091000.v1.1
prunus_persica	Prupe.1G254900_v2.0.a1 Prupe.3G282300_v2.0.a1
pyrus_communis	pycom16g07810
rosa_chinensis	RchiOBHm_Chr2g0170941 RchiOBHm_Chr4g0443971
rosa_laevigata	RLG00000005871 RLG00000021994
rosa_multiflora	Rmu_sc0010716.1_g000005 Rmu_sc0025148.1_g000001 Rmu_sc0027702.1_g000001 Rmu_sc0029481.1_g000001
rosa_roxburghii	Rroxscaffold_2G00080960 Rroxscaffold_5G00384520
rosa_rugosa	Rorug02G0552500 Rorug04G0348600
rosa_samantha	Rh2AG625300 Rh2BG636100 Rh2CG604600 Rh2DG647700 Rh4AG409300 Rh4BG420400 Rh4CG434400 Rh4DG415400
rosa_wichuraiana	Rw2G051790 Rw4G035160

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	600
AarI	CACCTGC	1 cut(s)	329
Acc36I	ACCTGC	2 cut(s)	329, 522
AccI	GTMKAC	3 cut(s)	643, 775, 1131
AciI	CCGC	1 cut(s)	262
AclWI	GGATC	5 cut(s)	491, 862, 875, 1079, 1259
AcsI	RAATTY	4 cut(s)	287, 716, 1114, 1256
AcuI	CTGAAG	2 cut(s)	1298, 1449
AfaI	GTAC	2 cut(s)	197, 1149
AfeI	AGCGCT	1 cut(s)	898
AfiI	CCNNNNNNNGG	1 cut(s)	261
AflIII	ACRYGT	1 cut(s)	921
AgsI	TTSAA	6 cut(s)	129, 992, 1031, 1303, 1437, 1458
AhlI	ACTAGT	2 cut(s)	329, 374
AjnI	CCWGG	1 cut(s)	863
Alw26I	GTCTC	2 cut(s)	138, 381
AlwI	GGATC	5 cut(s)	491, 862, 875, 1079, 1259
Aor51HI	AGCGCT	1 cut(s)	898
AoxI	GGCC	2 cut(s)	1228, 1416
ApeKI	GCWGC	7 cut(s)	171, 214, 259, 322, 345, 936, 1245
ApoI	RAATTY	4 cut(s)	287, 716, 1114, 1256
AspLEI	GCGC	1 cut(s)	899
AspS9I	GGNCC	1 cut(s)	489
AsuHPI	GGTGA	4 cut(s)	43, 377, 559, 1049
AvaII	GGWCC	1 cut(s)	489
BaeGI	GKGCMC	1 cut(s)	483
BamHI	GGATCC	1 cut(s)	867
BbvI	GCAGC	7 cut(s)	158, 226, 271, 332, 334, 923, 1257
BccI	CCATC	6 cut(s)	65, 127, 428, 591, 1271, 1363
BciT130I	CCWGG	1 cut(s)	865
BciVI	GTATCC	1 cut(s)	936
BcoDI	GTCTC	2 cut(s)	138, 381
BcuI	ACTAGT	2 cut(s)	329, 374
BfaI	CTAG	3 cut(s)	24, 330, 375
BfmI	CTRYAG	3 cut(s)	94, 776, 1132
BfoI	RGCGCY	1 cut(s)	900
BfuAI	ACCTGC	2 cut(s)	329, 522
BfuI	GTATCC	1 cut(s)	936
BisI	GCNGC	7 cut(s)	172, 215, 260, 323, 346, 937, 1246
BlpI	GCTNAGC	1 cut(s)	75
BlsI	GCNGC	7 cut(s)	173, 216, 261, 324, 347, 938, 1247
Bme1390I	CCNGG	1 cut(s)	865
Bme18I	GGWCC	1 cut(s)	489
BmgT120I	GGNCC	1 cut(s)	489
BmiI	GGNNCC	2 cut(s)	824, 869
BmrFI	CCNGG	1 cut(s)	865
BmrI	ACTGGG	2 cut(s)	157, 1043
BmsI	GCATC	1 cut(s)	1257
BmuI	ACTGGG	2 cut(s)	157, 1043
BpmI	CTGGAG	1 cut(s)	1143
Bpu1102I	GCTNAGC	1 cut(s)	75
BpuEI	CTTGAG	4 cut(s)	541, 629, 885, 899
Bsa29I	ATCGAT	1 cut(s)	684
BsaAI	YACGTR	1 cut(s)	924
BsaJI	CCNNGG	2 cut(s)	976, 1359
Bsc4I	CCNNNNNNNGG	1 cut(s)	261
Bse1I	ACTGG	5 cut(s)	51, 152, 662, 1038, 1246
BseBI	CCWGG	1 cut(s)	865
BseCI	ATCGAT	1 cut(s)	684
BseDI	CCNNGG	2 cut(s)	976, 1359
BseGI	GGATG	3 cut(s)	119, 443, 1355
BseLI	CCNNNNNNNGG	1 cut(s)	261
BseMII	CTCAG	3 cut(s)	89, 843, 1302
BseNI	ACTGG	5 cut(s)	51, 152, 662, 1038, 1246
BseRI	GAGGAG	1 cut(s)	72
BseSI	GKGCMC	1 cut(s)	483
BseXI	GCAGC	7 cut(s)	158, 226, 271, 332, 334, 923, 1257
BseYI	CCCAGC	1 cut(s)	255
BsgI	GTGCAG	2 cut(s)	146, 357
BshFI	GGCC	2 cut(s)	1230, 1418
BshVI	ATCGAT	1 cut(s)	684
BslFI	GGGAC	1 cut(s)	995
BslI	CCNNNNNNNGG	1 cut(s)	261
BsmAI	GTCTC	2 cut(s)	138, 381
BsmFI	GGGAC	1 cut(s)	995
BsnI	GGCC	2 cut(s)	1230, 1418
Bsp1286I	GDGCHC	1 cut(s)	483
Bsp143I	GATC	5 cut(s)	496, 867, 1023, 1084, 1264
Bsp1720I	GCTNAGC	1 cut(s)	75
Bsp19I	CCATGG	1 cut(s)	1359
BspACI	CCGC	1 cut(s)	262
BspANI	GGCC	2 cut(s)	1230, 1418
BspCNI	CTCAG	3 cut(s)	88, 842, 1301
BspDI	ATCGAT	1 cut(s)	684
BspLI	GGNNCC	2 cut(s)	824, 869
BspMI	ACCTGC	2 cut(s)	329, 522
BspPI	GGATC	5 cut(s)	491, 862, 875, 1079, 1259
BsrI	ACTGG	5 cut(s)	51, 152, 662, 1038, 1246
BssECI	CCNNGG	2 cut(s)	976, 1359
BssMI	GATC	5 cut(s)	496, 867, 1023, 1084, 1264
BssNAI	GTATAC	1 cut(s)	644
BssT1I	CCWWGG	2 cut(s)	976, 1359
Bst1107I	GTATAC	1 cut(s)	644
Bst2UI	CCWGG	1 cut(s)	865
Bst4CI	ACNGT	5 cut(s)	95, 504, 595, 648, 773
BstBAI	YACGTR	1 cut(s)	924
BstC8I	GCNNGC	2 cut(s)	219, 1320
BstDEI	CTNAG	7 cut(s)	6, 75, 453, 829, 1020, 1288, 1340
BstDSI	CCRYGG	1 cut(s)	1359
BstEII	GGTNACC	1 cut(s)	49
BstF5I	GGATG	3 cut(s)	119, 443, 1355
BstH2I	RGCGCY	1 cut(s)	900
BstHHI	GCGC	1 cut(s)	899
BstKTI	GATC	5 cut(s)	499, 870, 1026, 1087, 1267
BstMAI	GTCTC	2 cut(s)	138, 381
BstMBI	GATC	5 cut(s)	496, 867, 1023, 1084, 1264
BstMWI	GCNNNNNNNGC	1 cut(s)	16
BstNI	CCWGG	1 cut(s)	865
BstPI	GGTNACC	1 cut(s)	49
BstSCI	CCNGG	1 cut(s)	863
BstSFI	CTRYAG	3 cut(s)	94, 776, 1132
BstSLI	GKGCMC	1 cut(s)	483
BstV1I	GCAGC	7 cut(s)	158, 226, 271, 332, 334, 923, 1257
BstX2I	RGATCY	1 cut(s)	867
BstYI	RGATCY	1 cut(s)	867
BstZ17I	GTATAC	1 cut(s)	644
Bsu15I	ATCGAT	1 cut(s)	684
BsuI	GTATCC	1 cut(s)	936
BsuRI	GGCC	2 cut(s)	1230, 1418
BsuTUI	ATCGAT	1 cut(s)	684
BtgI	CCRYGG	1 cut(s)	1359
BtsCI	GGATG	3 cut(s)	119, 443, 1355
BtsI	GCAGTG	2 cut(s)	483, 1202
BtsIMutI	CAGTG	2 cut(s)	483, 1202
BveI	ACCTGC	2 cut(s)	329, 522
Cac8I	GCNNGC	2 cut(s)	219, 1320
CfoI	GCGC	1 cut(s)	899
Cfr13I	GGNCC	1 cut(s)	489
ClaI	ATCGAT	1 cut(s)	684
Csp6I	GTAC	2 cut(s)	196, 1148
CviAII	CATG	7 cut(s)	280, 486, 1109, 1329, 1360, 1394, 1464
CviQI	GTAC	2 cut(s)	196, 1148
DdeI	CTNAG	7 cut(s)	6, 75, 453, 829, 1020, 1288, 1340
DpnI	GATC	5 cut(s)	498, 869, 1025, 1086, 1266
DpnII	GATC	5 cut(s)	496, 867, 1023, 1084, 1264
Eco130I	CCWWGG	2 cut(s)	976, 1359
Eco147I	AGGCCT	2 cut(s)	1230, 1418
Eco47I	GGWCC	1 cut(s)	489
Eco47III	AGCGCT	1 cut(s)	898
Eco57I	CTGAAG	2 cut(s)	1298, 1449
Eco91I	GGTNACC	1 cut(s)	49
EcoO65I	GGTNACC	1 cut(s)	49
EcoRII	CCWGG	1 cut(s)	863
EcoT14I	CCWWGG	2 cut(s)	976, 1359
ErhI	CCWWGG	2 cut(s)	976, 1359
FaeI	CATG	7 cut(s)	283, 489, 1112, 1332, 1363, 1397, 1467
FaqI	GGGAC	1 cut(s)	995
FatI	CATG	7 cut(s)	279, 485, 1108, 1328, 1359, 1393, 1463
FblI	GTMKAC	3 cut(s)	643, 775, 1131
Fnu4HI	GCNGC	7 cut(s)	172, 215, 260, 323, 346, 937, 1246
FokI	GGATG	3 cut(s)	106, 450, 1342
Fsp4HI	GCNGC	7 cut(s)	172, 215, 260, 323, 346, 937, 1246
FspBI	CTAG	3 cut(s)	24, 330, 375
GlaI	GCGC	1 cut(s)	898
GluI	GCNGC	7 cut(s)	172, 215, 260, 323, 346, 937, 1246
GsaI	CCCAGC	1 cut(s)	259
GsuI	CTGGAG	1 cut(s)	1143
HaeII	RGCGCY	1 cut(s)	900
HaeIII	GGCC	2 cut(s)	1230, 1418
HhaI	GCGC	1 cut(s)	899
Hin1II	CATG	7 cut(s)	283, 489, 1112, 1332, 1363, 1397, 1467
Hin6I	GCGC	1 cut(s)	897
HinP1I	GCGC	1 cut(s)	897
HindIII	AAGCTT	2 cut(s)	724, 1296
HinfI	GANTC	3 cut(s)	248, 701, 1189
HphI	GGTGA	4 cut(s)	43, 377, 559, 1049
Hpy166II	GTNNAC	3 cut(s)	644, 776, 1132
Hpy188III	TCNNGA	8 cut(s)	245, 871, 929, 950, 1088, 1122, 1167, 1427
Hpy8I	GTNNAC	3 cut(s)	644, 776, 1132
Hpy99I	CGWCG	1 cut(s)	91
HpyAV	CCTTC	2 cut(s)	110, 926
HpyCH4III	ACNGT	5 cut(s)	95, 504, 595, 648, 773
HpyCH4IV	ACGT	1 cut(s)	923
HpyF10VI	GCNNNNNNNGC	1 cut(s)	16
HpyF3I	CTNAG	7 cut(s)	6, 75, 453, 829, 1020, 1288, 1340
HpySE526I	ACGT	1 cut(s)	923
Hsp92II	CATG	7 cut(s)	283, 489, 1112, 1332, 1363, 1397, 1467
HspAI	GCGC	1 cut(s)	897
Kzo9I	GATC	5 cut(s)	496, 867, 1023, 1084, 1264
LmnI	GCTCC	1 cut(s)	1363
Lsp1109I	GCAGC	7 cut(s)	158, 226, 271, 332, 334, 923, 1257
LweI	GCATC	1 cut(s)	1257
MaeI	CTAG	3 cut(s)	24, 330, 375
MaeII	ACGT	1 cut(s)	923
MaeIII	GTNAC	6 cut(s)	49, 370, 416, 547, 754, 950
MalI	GATC	5 cut(s)	498, 869, 1025, 1086, 1266
MboI	GATC	5 cut(s)	496, 867, 1023, 1084, 1264
MboII	GAAGA	4 cut(s)	31, 307, 794, 1110
MfeI	CAATTG	1 cut(s)	888
MflI	RGATCY	1 cut(s)	867
MhlI	GDGCHC	1 cut(s)	483
MlyI	GAGTC	2 cut(s)	242, 710
MseI	TTAA	4 cut(s)	510, 672, 1211, 1233
MslI	CAYNNNNRTG	1 cut(s)	108
MspA1I	CMGCKG	3 cut(s)	262, 325, 1318
MspR9I	CCNGG	1 cut(s)	865
MunI	CAATTG	1 cut(s)	888
MvaI	CCWGG	1 cut(s)	865
MwoI	GCNNNNNNNGC	1 cut(s)	16
NcoI	CCATGG	1 cut(s)	1359
NdeII	GATC	5 cut(s)	496, 867, 1023, 1084, 1264
NlaIII	CATG	7 cut(s)	283, 489, 1112, 1332, 1363, 1397, 1467
NlaIV	GGNNCC	2 cut(s)	824, 869
NmuCI	GTSAC	3 cut(s)	49, 547, 950
PaqCI	CACCTGC	1 cut(s)	329
PceI	AGGCCT	2 cut(s)	1230, 1418
PfeI	GAWTC	1 cut(s)	1189
PfoI	TCCNGGA	1 cut(s)	863
PkrI	GCNGC	7 cut(s)	173, 216, 261, 324, 347, 938, 1247
PleI	GAGTC	2 cut(s)	242, 709
PpsI	GAGTC	2 cut(s)	242, 709
Ppu21I	YACGTR	1 cut(s)	924
PsiI	TTATAA	1 cut(s)	600
Psp6I	CCWGG	1 cut(s)	863
PspEI	GGTNACC	1 cut(s)	49
PspFI	CCCAGC	1 cut(s)	255
PspGI	CCWGG	1 cut(s)	863
PspN4I	GGNNCC	2 cut(s)	824, 869
PspPI	GGNCC	1 cut(s)	489
PsuI	RGATCY	1 cut(s)	867
PvuII	CAGCTG	2 cut(s)	325, 1318
RsaI	GTAC	2 cut(s)	197, 1149
RsaNI	GTAC	2 cut(s)	196, 1148
RseI	CAYNNNNRTG	1 cut(s)	108
SaqAI	TTAA	4 cut(s)	510, 672, 1211, 1233
SatI	GCNGC	7 cut(s)	172, 215, 260, 323, 346, 937, 1246
Sau3AI	GATC	5 cut(s)	496, 867, 1023, 1084, 1264
Sau96I	GGNCC	1 cut(s)	489
SchI	GAGTC	2 cut(s)	242, 710
ScrFI	CCNGG	1 cut(s)	865
SduI	GDGCHC	1 cut(s)	483
SfaNI	GCATC	1 cut(s)	1257
SfcI	CTRYAG	3 cut(s)	94, 776, 1132
SinI	GGWCC	1 cut(s)	489
SmiMI	CAYNNNNRTG	1 cut(s)	108
SmlI	CTYRAG	4 cut(s)	556, 608, 878, 900
SmoI	CTYRAG	4 cut(s)	556, 608, 878, 900
SpeI	ACTAGT	2 cut(s)	329, 374
SseBI	AGGCCT	2 cut(s)	1230, 1418
SsiI	CCGC	1 cut(s)	262
SspI	AATATT	1 cut(s)	186
SspMI	CTAG	3 cut(s)	24, 330, 375
StuI	AGGCCT	2 cut(s)	1230, 1418
StyD4I	CCNGG	1 cut(s)	863
StyI	CCWWGG	2 cut(s)	976, 1359
TaaI	ACNGT	5 cut(s)	95, 504, 595, 648, 773
TaiI	ACGT	1 cut(s)	926
TaqI	TCGA	4 cut(s)	89, 650, 684, 1275
TatI	WGTACW	1 cut(s)	1147
TfiI	GAWTC	1 cut(s)	1189
Tru1I	TTAA	4 cut(s)	510, 672, 1211, 1233
Tru9I	TTAA	4 cut(s)	510, 672, 1211, 1233
TscAI	CASTG	2 cut(s)	483, 1209
TseFI	GTSAC	3 cut(s)	49, 547, 950
TseI	GCWGC	7 cut(s)	171, 214, 259, 322, 345, 936, 1245
Tsp45I	GTSAC	3 cut(s)	49, 547, 950
TspDTI	ATGAA	7 cut(s)	31, 92, 705, 784, 935, 1202, 1269
TspGWI	ACGGA	1 cut(s)	75
TspRI	CASTG	2 cut(s)	483, 1209
VpaK11BI	GGWCC	1 cut(s)	489
XapI	RAATTY	4 cut(s)	287, 716, 1114, 1256
XmiI	GTMKAC	3 cut(s)	643, 775, 1131
XspI	CTAG	3 cut(s)	24, 330, 375

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.