FvH4_3g34020

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb3
OG0004205
Physical Location & Seq
Forward (+)
29439908 .. 29440847
940 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_3g34020.t1

Sequence Viewer

Length: 204 bp
ATGGAAAACCAAGAATTCAACTCCAACCGCAGCGCTAATCGCCTCCCTCCTCCAAGAAGAGGGCAGATCAAGATCAAGATCTTCAAATCAGTGGCTGCTGTGGTGGTGGGTGGGTTCATCCGCAAGCCGAAAGAAGATGGGCCCCAAATTCCAGCTGAACCGCCGAGCGGGTACAGCTCAGACGCTCAGTCTGAGATTTCCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

68

Amino Acids

7.32

Weight (kDa)

9.69

Isoelectric Point (pI)

55.81

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 168
AciI CCGC 4 cut(s) 28, 121, 161, 168
AcsI RAATTY 2 cut(s) 14, 147
AfaI GTAC 1 cut(s) 173
AfeI AGCGCT 1 cut(s) 34
AfiI CCNNNNNNNGG 2 cut(s) 59, 167
AgsI TTSAA 2 cut(s) 19, 85
AhdI GACNNNNNGTC 1 cut(s) 187
AluBI AGCT 2 cut(s) 155, 177
AluI AGCT 2 cut(s) 155, 177
AlwNI CAGNNNCTG 1 cut(s) 95
Aor51HI AGCGCT 1 cut(s) 34
AoxI GGCC 1 cut(s) 140
ApaI GGGCCC 1 cut(s) 144
ApeKI GCWGC 2 cut(s) 30, 95
ApoI RAATTY 2 cut(s) 14, 147
AspLEI GCGC 1 cut(s) 35
AspS9I GGNCC 2 cut(s) 140, 141
BaeGI GKGCMC 1 cut(s) 144
BanII GRGCYC 1 cut(s) 144
BbvI GCAGC 2 cut(s) 42, 82
BccI CCATC 1 cut(s) 131
BfoI RGCGCY 1 cut(s) 36
BglII AGATCT 1 cut(s) 78
BisI GCNGC 2 cut(s) 31, 96
BlsI GCNGC 2 cut(s) 32, 97
BmeRI GACNNNNNGTC 1 cut(s) 187
BmgT120I GGNCC 2 cut(s) 140, 141
BmiI GGNNCC 2 cut(s) 142, 143
BsaBI GATNNNNATC 2 cut(s) 71, 77
Bsc4I CCNNNNNNNGG 2 cut(s) 59, 167
Bse8I GATNNNNATC 2 cut(s) 71, 77
BseGI GGATG 1 cut(s) 117
BseJI GATNNNNATC 2 cut(s) 71, 77
BseLI CCNNNNNNNGG 2 cut(s) 59, 167
BseMII CTCAG 3 cut(s) 183, 192, 200
BseRI GAGGAG 1 cut(s) 39
BseSI GKGCMC 1 cut(s) 144
BseXI GCAGC 2 cut(s) 42, 82
BshFI GGCC 1 cut(s) 142
BslI CCNNNNNNNGG 2 cut(s) 59, 167
BsnI GGCC 1 cut(s) 142
Bsp120I GGGCCC 1 cut(s) 140
Bsp1286I GDGCHC 1 cut(s) 144
Bsp143I GATC 3 cut(s) 66, 72, 78
BspACI CCGC 4 cut(s) 28, 121, 161, 168
BspANI GGCC 1 cut(s) 142
BspCNI CTCAG 3 cut(s) 184, 191, 199
BspLI GGNNCC 2 cut(s) 142, 143
BsrBI CCGCTC 1 cut(s) 168
BssMI GATC 3 cut(s) 66, 72, 78
Bst6I CTCTTC 1 cut(s) 52
BstC8I GCNNGC 1 cut(s) 125
BstDEI CTNAG 3 cut(s) 178, 186, 192
BstF5I GGATG 1 cut(s) 117
BstH2I RGCGCY 1 cut(s) 36
BstHHI GCGC 1 cut(s) 35
BstKTI GATC 3 cut(s) 69, 75, 81
BstMBI GATC 3 cut(s) 66, 72, 78
BstMWI GCNNNNNNNGC 2 cut(s) 39, 174
BstSLI GKGCMC 1 cut(s) 144
BstV1I GCAGC 2 cut(s) 42, 82
BstX2I RGATCY 1 cut(s) 78
BstYI RGATCY 1 cut(s) 78
BsuRI GGCC 1 cut(s) 142
BtsCI GGATG 1 cut(s) 117
BtsIMutI CAGTG 1 cut(s) 96
Cac8I GCNNGC 1 cut(s) 125
CaiI CAGNNNCTG 1 cut(s) 95
CfoI GCGC 1 cut(s) 35
Cfr13I GGNCC 2 cut(s) 140, 141
CseI GACGC 1 cut(s) 191
Csp6I GTAC 1 cut(s) 172
CviJI RGCY 5 cut(s) 95, 127, 142, 155, 177
CviKI_1 RGCY 5 cut(s) 95, 127, 142, 155, 177
CviQI GTAC 1 cut(s) 172
DdeI CTNAG 3 cut(s) 178, 186, 192
DpnI GATC 3 cut(s) 68, 74, 80
DpnII GATC 3 cut(s) 66, 72, 78
DriI GACNNNNNGTC 1 cut(s) 187
Eam1104I CTCTTC 1 cut(s) 52
Eam1105I GACNNNNNGTC 1 cut(s) 187
EarI CTCTTC 1 cut(s) 52
Eco24I GRGCYC 1 cut(s) 144
Eco47III AGCGCT 1 cut(s) 34
EcoO109I RGGNCCY 1 cut(s) 141
EcoRI GAATTC 1 cut(s) 14
EcoT38I GRGCYC 1 cut(s) 144
FauI CCCGC 1 cut(s) 161
Fnu4HI GCNGC 2 cut(s) 31, 96
FokI GGATG 1 cut(s) 104
FriOI GRGCYC 1 cut(s) 144
Fsp4HI GCNGC 2 cut(s) 31, 96
GlaI GCGC 1 cut(s) 34
GluI GCNGC 2 cut(s) 31, 96
HaeII RGCGCY 1 cut(s) 36
HaeIII GGCC 1 cut(s) 142
HgaI GACGC 1 cut(s) 191
HhaI GCGC 1 cut(s) 35
Hin6I GCGC 1 cut(s) 33
HinP1I GCGC 1 cut(s) 33
Hpy188I TCNGA 2 cut(s) 181, 193
Hpy188III TCNNGA 3 cut(s) 70, 76, 201
HpyF10VI GCNNNNNNNGC 2 cut(s) 39, 174
HpyF3I CTNAG 3 cut(s) 178, 186, 192
HspAI GCGC 1 cut(s) 33
Kzo9I GATC 3 cut(s) 66, 72, 78
LpnPI CCDG 1 cut(s) 165
Lsp1109I GCAGC 2 cut(s) 42, 82
MalI GATC 3 cut(s) 68, 74, 80
MbiI CCGCTC 1 cut(s) 168
MboI GATC 3 cut(s) 66, 72, 78
MboII GAAGA 3 cut(s) 69, 73, 146
MflI RGATCY 1 cut(s) 78
MhlI GDGCHC 1 cut(s) 144
MluCI AATT 2 cut(s) 14, 147
MmeI TCCRAC 1 cut(s) 48
MnlI CCTC 4 cut(s) 53, 53, 57, 60
MspA1I CMGCKG 1 cut(s) 155
MwoI GCNNNNNNNGC 2 cut(s) 39, 174
NdeII GATC 3 cut(s) 66, 72, 78
NlaIV GGNNCC 2 cut(s) 142, 143
NmeAIII GCCGAG 1 cut(s) 189
PkrI GCNGC 2 cut(s) 32, 97
PspN4I GGNNCC 2 cut(s) 142, 143
PspOMI GGGCCC 1 cut(s) 140
PspPI GGNCC 2 cut(s) 140, 141
PstNI CAGNNNCTG 1 cut(s) 95
PsuI RGATCY 1 cut(s) 78
PvuII CAGCTG 1 cut(s) 155
RsaI GTAC 1 cut(s) 173
RsaNI GTAC 1 cut(s) 172
SatI GCNGC 2 cut(s) 31, 96
Sau3AI GATC 3 cut(s) 66, 72, 78
Sau96I GGNCC 2 cut(s) 140, 141
SduI GDGCHC 1 cut(s) 144
SetI ASST 2 cut(s) 157, 179
SgeI CNNG 8 cut(s) 23, 66, 82, 88, 136, 164, 177, 181
Sse9I AATT 2 cut(s) 14, 147
SsiI CCGC 4 cut(s) 28, 121, 161, 168
TasI AATT 2 cut(s) 14, 147
TscAI CASTG 1 cut(s) 96
TseI GCWGC 2 cut(s) 30, 95
TspDTI ATGAA 1 cut(s) 106
TspRI CASTG 1 cut(s) 96
XapI RAATTY 2 cut(s) 14, 147
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.