pycom11g10190

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr11
OG0004205
Physical Location & Seq
Reverse (-)
8563468 .. 8564143
676 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom11g10190.1

Sequence Viewer

Length: 540 bp
ATGTTGTGGTTTTTTCTCCTGCTCCAGAGGCATCAGACAAGGAGATCCGTTGTGTCCCTATTATTTTGTTTGGCAGAAGAGAAAGCAAAGCAAAAAAAAAAAAAAAAAAATTCGCCTATAAACACACACCCTGAGCTCGATTCCGCTTCAATATACTCAGCACACCCAACATCCTCTCCAAAGCACGCTCGCTCGCTCTATCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTAGTGGGAGAAAAGGCCTTCAGCTAAGCACTCCGTTTTCCTCTGTTCTCCTACTCCCTCCACCCTTCAAAGCCCTCATGTTGAATTCGAAGAAAATGGAAATCCCAGGTTCCAAATCCAAGCACAGCCAAAATCGGACCCTTCCTCCCAGGAGGGGACTGGTTAAGATCAGGATAATCAAGGGCTTGGTCAAGTCACTGGCTTCCATGGGGGGCGGGCGAACTCGAAAGCCGAATAAATATGGAGGGTTCCTGAGCTCCAGCTCCCAAACCCCAGCTGAAACCCCAAGTGGGTATTGCTCAGATGCTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

180

Amino Acids

19.69

Weight (kDa)

10.74

Isoelectric Point (pI)

56.29

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 144, 444
AclWI GGATC 1 cut(s) 39
AcsI RAATTY 2 cut(s) 109, 313
AcuI CTGAAG 1 cut(s) 233
AfiI CCNNNNNNNGG 2 cut(s) 383, 519
AgsI TTSAA 3 cut(s) 150, 298, 313
AjnI CCWGG 2 cut(s) 334, 377
AluBI AGCT 5 cut(s) 136, 253, 486, 492, 506
AluI AGCT 5 cut(s) 136, 253, 486, 492, 506
Alw21I GWGCWC 2 cut(s) 138, 488
AlwI GGATC 1 cut(s) 39
AoxI GGCC 1 cut(s) 244
ApoI RAATTY 2 cut(s) 109, 313
AspS9I GGNCC 1 cut(s) 366
AsuII TTCGAA 1 cut(s) 317
AvaII GGWCC 1 cut(s) 366
BanII GRGCYC 2 cut(s) 138, 488
Bbv12I GWGCWC 2 cut(s) 138, 488
BciT130I CCWGG 2 cut(s) 336, 379
BfaI CTAG 1 cut(s) 231
BlpI GCTNAGC 1 cut(s) 254
Bme1390I CCNGG 2 cut(s) 336, 379
Bme18I GGWCC 1 cut(s) 366
BmgT120I GGNCC 1 cut(s) 366
BmiI GGNNCC 3 cut(s) 340, 368, 479
BmrFI CCNGG 2 cut(s) 336, 379
BmsI GCATC 2 cut(s) 40, 523
BpmI CTGGAG 2 cut(s) 8, 472
Bpu10I CCTNAGC 2 cut(s) 132, 482
Bpu1102I GCTNAGC 1 cut(s) 254
Bpu14I TTCGAA 1 cut(s) 317
BsaJI CCNNGG 3 cut(s) 334, 377, 435
BsaXI ACNNNNNCTCC 4 cut(s) 160, 190, 358, 388
Bsc4I CCNNNNNNNGG 2 cut(s) 383, 519
Bse1I ACTGG 2 cut(s) 393, 432
BseBI CCWGG 2 cut(s) 336, 379
BseDI CCNNGG 3 cut(s) 334, 377, 435
BseGI GGATG 1 cut(s) 170
BseLI CCNNNNNNNGG 2 cut(s) 383, 519
BseMII CTCAG 3 cut(s) 123, 171, 473
BseNI ACTGG 2 cut(s) 393, 432
BseYI CCCAGC 1 cut(s) 502
BshFI GGCC 1 cut(s) 246
BsiHKAI GWGCWC 2 cut(s) 138, 488
BslFI GGGAC 2 cut(s) 40, 399
BslI CCNNNNNNNGG 2 cut(s) 383, 519
BsmFI GGGAC 2 cut(s) 40, 399
BsnI GGCC 1 cut(s) 246
Bsp119I TTCGAA 1 cut(s) 317
Bsp1286I GDGCHC 2 cut(s) 138, 488
Bsp143I GATC 2 cut(s) 44, 396
Bsp1720I GCTNAGC 1 cut(s) 254
Bsp19I CCATGG 1 cut(s) 435
BspACI CCGC 2 cut(s) 144, 444
BspANI GGCC 1 cut(s) 246
BspCNI CTCAG 3 cut(s) 124, 170, 474
BspLI GGNNCC 3 cut(s) 340, 368, 479
BspPI GGATC 1 cut(s) 39
BspT104I TTCGAA 1 cut(s) 317
BsrI ACTGG 2 cut(s) 393, 432
BssECI CCNNGG 3 cut(s) 334, 377, 435
BssMI GATC 2 cut(s) 44, 396
BssT1I CCWWGG 1 cut(s) 435
Bst2UI CCWGG 2 cut(s) 336, 379
Bst6I CTCTTC 1 cut(s) 72
BstBI TTCGAA 1 cut(s) 317
BstC8I GCNNGC 4 cut(s) 186, 190, 194, 446
BstDEI CTNAG 5 cut(s) 132, 157, 254, 482, 529
BstDSI CCRYGG 1 cut(s) 435
BstF5I GGATG 1 cut(s) 170
BstKTI GATC 2 cut(s) 47, 399
BstMBI GATC 2 cut(s) 44, 396
BstMWI GCNNNNNNNGC 1 cut(s) 28
BstNI CCWGG 2 cut(s) 336, 379
BstSCI CCNGG 2 cut(s) 334, 377
BstX2I RGATCY 1 cut(s) 44
BstYI RGATCY 1 cut(s) 44
BsuRI GGCC 1 cut(s) 246
BtgI CCRYGG 1 cut(s) 435
BtsCI GGATG 1 cut(s) 170
BtsIMutI CAGTG 1 cut(s) 425
Cac8I GCNNGC 4 cut(s) 186, 190, 194, 446
Cfr13I GGNCC 1 cut(s) 366
CviAII CATG 2 cut(s) 307, 436
DdeI CTNAG 5 cut(s) 132, 157, 254, 482, 529
DpnI GATC 2 cut(s) 46, 398
DpnII GATC 2 cut(s) 44, 396
Eam1104I CTCTTC 1 cut(s) 72
EarI CTCTTC 1 cut(s) 72
Ecl136II GAGCTC 2 cut(s) 136, 486
Eco130I CCWWGG 1 cut(s) 435
Eco147I AGGCCT 1 cut(s) 246
Eco24I GRGCYC 2 cut(s) 138, 488
Eco47I GGWCC 1 cut(s) 366
Eco53kI GAGCTC 2 cut(s) 136, 486
Eco57I CTGAAG 1 cut(s) 233
EcoICRI GAGCTC 2 cut(s) 136, 486
EcoRI GAATTC 1 cut(s) 313
EcoRII CCWGG 2 cut(s) 334, 377
EcoT14I CCWWGG 1 cut(s) 435
EcoT38I GRGCYC 2 cut(s) 138, 488
ErhI CCWWGG 1 cut(s) 435
FaeI CATG 2 cut(s) 310, 439
FaiI YATR 5 cut(s) 119, 154, 308, 437, 471
FaqI GGGAC 2 cut(s) 40, 399
FatI CATG 2 cut(s) 306, 435
FauI CCCGC 1 cut(s) 437
FokI GGATG 1 cut(s) 157
FriOI GRGCYC 2 cut(s) 138, 488
FspBI CTAG 1 cut(s) 231
GsaI CCCAGC 1 cut(s) 506
GsuI CTGGAG 2 cut(s) 8, 472
HaeIII GGCC 1 cut(s) 246
Hin1II CATG 2 cut(s) 310, 439
HinfI GANTC 1 cut(s) 140
Hpy188I TCNGA 3 cut(s) 36, 366, 532
Hpy188III TCNNGA 3 cut(s) 25, 400, 481
HpyAV CCTTC 3 cut(s) 257, 304, 380
HpyF10VI GCNNNNNNNGC 1 cut(s) 28
HpyF3I CTNAG 5 cut(s) 132, 157, 254, 482, 529
Hsp92II CATG 2 cut(s) 310, 439
Kzo9I GATC 2 cut(s) 44, 396
LmnI GCTCC 3 cut(s) 27, 491, 497
LweI GCATC 2 cut(s) 40, 523
MaeI CTAG 1 cut(s) 231
MaeIII GTNAC 1 cut(s) 423
MalI GATC 2 cut(s) 46, 398
MboI GATC 2 cut(s) 44, 396
MboII GAAGA 2 cut(s) 89, 331
MflI RGATCY 1 cut(s) 44
MhlI GDGCHC 2 cut(s) 138, 488
MluCI AATT 2 cut(s) 109, 313
MnlI CCTC 8 cut(s) 21, 184, 280, 297, 314, 375, 384, 467
MseI TTAA 2 cut(s) 393, 538
MspA1I CMGCKG 1 cut(s) 506
MspR9I CCNGG 2 cut(s) 336, 379
MvaI CCWGG 2 cut(s) 336, 379
MwoI GCNNNNNNNGC 1 cut(s) 28
NcoI CCATGG 1 cut(s) 435
NdeII GATC 2 cut(s) 44, 396
NlaIII CATG 2 cut(s) 310, 439
NlaIV GGNNCC 3 cut(s) 340, 368, 479
NmuCI GTSAC 1 cut(s) 423
NspV TTCGAA 1 cut(s) 317
PceI AGGCCT 1 cut(s) 246
PfeI GAWTC 1 cut(s) 140
Psp124BI GAGCTC 2 cut(s) 138, 488
Psp6I CCWGG 2 cut(s) 334, 377
PspFI CCCAGC 1 cut(s) 502
PspGI CCWGG 2 cut(s) 334, 377
PspN4I GGNNCC 3 cut(s) 340, 368, 479
PspPI GGNCC 1 cut(s) 366
PsuI RGATCY 1 cut(s) 44
PvuII CAGCTG 1 cut(s) 506
SacI GAGCTC 2 cut(s) 138, 488
SaqAI TTAA 2 cut(s) 393, 538
Sau3AI GATC 2 cut(s) 44, 396
Sau96I GGNCC 1 cut(s) 366
ScrFI CCNGG 2 cut(s) 336, 379
SduI GDGCHC 2 cut(s) 138, 488
SetI ASST 6 cut(s) 138, 255, 340, 488, 494, 508
SfaNI GCATC 2 cut(s) 40, 523
SfuI TTCGAA 1 cut(s) 317
SinI GGWCC 1 cut(s) 366
Sse9I AATT 2 cut(s) 109, 313
SseBI AGGCCT 1 cut(s) 246
SsiI CCGC 2 cut(s) 144, 444
SspMI CTAG 1 cut(s) 231
SstI GAGCTC 2 cut(s) 138, 488
StuI AGGCCT 1 cut(s) 246
StyD4I CCNGG 2 cut(s) 334, 377
StyI CCWWGG 1 cut(s) 435
TaqI TCGA 3 cut(s) 138, 317, 454
TasI AATT 2 cut(s) 109, 313
TfiI GAWTC 1 cut(s) 140
Tru1I TTAA 2 cut(s) 393, 538
Tru9I TTAA 2 cut(s) 393, 538
TscAI CASTG 1 cut(s) 432
TseFI GTSAC 1 cut(s) 423
Tsp45I GTSAC 1 cut(s) 423
TspGWI ACGGA 2 cut(s) 37, 252
TspRI CASTG 1 cut(s) 432
VpaK11BI GGWCC 1 cut(s) 366
XapI RAATTY 2 cut(s) 109, 313
XcmI CCANNNNNNNNNTGG 1 cut(s) 385
XspI CTAG 1 cut(s) 231
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.