Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5D

Orthogroup ID

OG0004205

Physical Location & Seq

Genomic Coordinates Forward (+)

68942335 .. 68943112

Gene Structure 778 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5DG431000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 324 bp

ATGGAAATCCCAGAATCCAACTCCAACTACCGTCTGAAACGCCTCCCTCCTCCTAGAGGGCAGATCAAGAAAAAGATCTTCAAATCAGTGGTTTCAGCGGTGGGTGGGCTCATTAGCAAACCGAAAGAAGATGGATCCCAAATTCCAGCTGAACCGCGGAGCGGGAACAATTTCTGTGATTTTCTTGCTGTTACTTTTCAACTCCGGCAAGTTTCTGTGCCCCTGAACCAAGTCCAAGGTCATTTTTTACTCTCTGAAGTCGCCGATCGGCGCCACCTTGATTCTCATGTTCAGATCTTTGCCTTGAGCAAGCTGAGGCGGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

107

Amino Acids

12.06

Weight (kDa)

10.28

Isoelectric Point (pI)

43.62

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004205)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G45730
fragaria_vesca	FvH4_3g34010 FvH4_3g34020 FvH4_3g34080
prunus_persica	Prupe.6G090700_v2.0.a1 Prupe.6G090800_v2.0.a1
pyrus_communis	pycom01g14210 pycom03g08710 pycom03g08740 pycom11g10190 pycom11g10200 pycom11g10210
rosa_chinensis	RchiOBHm_Chr5g0061611 RchiOBHm_Chr5g0061631 RchiOBHm_Chr5g0061691 RchiOBHm_Chr5g0061701 RchiOBHm_Chr5g0061721 RchiOBHm_Chr5g0061731 RchiOBHm_Chr5g0061741
rosa_laevigata	RLG00000035494 RLG00000035498
rosa_roxburghii	Rroxscaffold_1G00019040 Rroxscaffold_1G00019060 Rroxscaffold_1G00019100
rosa_rugosa	Rorug05G0342000.1 Rorug05G0342100
rosa_samantha	Rh1AG005100 Rh5AG404000 Rh5BG416700 Rh5CG441200 Rh5DG430800 Rh5DG431000 Rh7CG345100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	270
AccBSI	CCGCTC	1 cut(s)	162
AccII	CGCG	1 cut(s)	157
AciI	CCGC	5 cut(s)	98, 155, 157, 162, 319
AclWI	GGATC	2 cut(s)	129, 142
AcsI	RAATTY	1 cut(s)	141
AcuI	CTGAAG	1 cut(s)	276
AcyI	GRCGYC	1 cut(s)	271
AfiI	CCNNNNNNNGG	2 cut(s)	56, 161
AgsI	TTSAA	2 cut(s)	82, 200
AluBI	AGCT	2 cut(s)	149, 313
AluI	AGCT	2 cut(s)	149, 313
AlwI	GGATC	2 cut(s)	129, 142
ApoI	RAATTY	1 cut(s)	141
Asp700I	GAANNNNTTC	1 cut(s)	170
AspLEI	GCGC	1 cut(s)	273
BaeGI	GKGCMC	1 cut(s)	222
BamHI	GGATCC	1 cut(s)	134
BanI	GGYRCC	1 cut(s)	270
BanII	GRGCYC	1 cut(s)	111
BbvCI	CCTCAGC	1 cut(s)	314
BccI	CCATC	1 cut(s)	125
BfaI	CTAG	1 cut(s)	54
BfoI	RGCGCY	1 cut(s)	274
BglII	AGATCT	2 cut(s)	75, 294
BmiI	GGNNCC	2 cut(s)	136, 272
Bpu10I	CCTNAGC	1 cut(s)	314
BsaHI	GRCGYC	1 cut(s)	271
BsaJI	CCNNGG	2 cut(s)	155, 235
Bsc4I	CCNNNNNNNGG	2 cut(s)	56, 161
BseDI	CCNNGG	2 cut(s)	155, 235
BseLI	CCNNNNNNNGG	2 cut(s)	56, 161
BseMII	CTCAG	1 cut(s)	305
BseRI	GAGGAG	1 cut(s)	39
BseSI	GKGCMC	1 cut(s)	222
Bsh1236I	CGCG	1 cut(s)	157
Bsh1285I	CGRYCG	1 cut(s)	268
BshNI	GGYRCC	1 cut(s)	270
BsiEI	CGRYCG	1 cut(s)	268
BsiSI	CCGG	1 cut(s)	205
BslI	CCNNNNNNNGG	2 cut(s)	56, 161
Bsp1286I	GDGCHC	2 cut(s)	111, 222
Bsp143I	GATC	5 cut(s)	63, 75, 134, 265, 294
BspACI	CCGC	5 cut(s)	98, 155, 157, 162, 319
BspCNI	CTCAG	1 cut(s)	306
BspFNI	CGCG	1 cut(s)	157
BspLI	GGNNCC	2 cut(s)	136, 272
BspPI	GGATC	2 cut(s)	129, 142
BspT107I	GGYRCC	1 cut(s)	270
BsrBI	CCGCTC	1 cut(s)	162
BssECI	CCNNGG	2 cut(s)	155, 235
BssMI	GATC	5 cut(s)	63, 75, 134, 265, 294
BssNI	GRCGYC	1 cut(s)	271
BssT1I	CCWWGG	1 cut(s)	235
Bst4CI	ACNGT	1 cut(s)	32
BstACI	GRCGYC	1 cut(s)	271
BstC8I	GCNNGC	1 cut(s)	311
BstDEI	CTNAG	1 cut(s)	314
BstDSI	CCRYGG	1 cut(s)	155
BstENI	CCTNNNNNAGG	1 cut(s)	54
BstFNI	CGCG	1 cut(s)	157
BstH2I	RGCGCY	1 cut(s)	274
BstHHI	GCGC	1 cut(s)	273
BstKTI	GATC	5 cut(s)	66, 78, 137, 268, 297
BstMBI	GATC	5 cut(s)	63, 75, 134, 265, 294
BstMCI	CGRYCG	1 cut(s)	268
BstSLI	GKGCMC	1 cut(s)	222
BstUI	CGCG	1 cut(s)	157
BstX2I	RGATCY	3 cut(s)	75, 134, 294
BstYI	RGATCY	3 cut(s)	75, 134, 294
BtgI	CCRYGG	1 cut(s)	155
BtsIMutI	CAGTG	1 cut(s)	93
Cac8I	GCNNGC	1 cut(s)	311
CfoI	GCGC	1 cut(s)	273
Cfr42I	CCGCGG	1 cut(s)	158
CviAII	CATG	1 cut(s)	287
CviJI	RGCY	3 cut(s)	109, 149, 313
CviKI_1	RGCY	3 cut(s)	109, 149, 313
DdeI	CTNAG	1 cut(s)	314
DinI	GGCGCC	1 cut(s)	272
DpnI	GATC	5 cut(s)	65, 77, 136, 267, 296
DpnII	GATC	5 cut(s)	63, 75, 134, 265, 294
Eco130I	CCWWGG	1 cut(s)	235
Eco24I	GRGCYC	1 cut(s)	111
Eco57I	CTGAAG	1 cut(s)	276
EcoNI	CCTNNNNNAGG	1 cut(s)	54
EcoT14I	CCWWGG	1 cut(s)	235
EcoT38I	GRGCYC	1 cut(s)	111
EgeI	GGCGCC	1 cut(s)	272
EheI	GGCGCC	1 cut(s)	272
ErhI	CCWWGG	1 cut(s)	235
FaeI	CATG	1 cut(s)	290
FaiI	YATR	1 cut(s)	288
FatI	CATG	1 cut(s)	286
FauI	CCCGC	1 cut(s)	155
FriOI	GRGCYC	1 cut(s)	111
FspBI	CTAG	1 cut(s)	54
GlaI	GCGC	1 cut(s)	272
HaeII	RGCGCY	1 cut(s)	274
HapII	CCGG	1 cut(s)	205
HhaI	GCGC	1 cut(s)	273
Hin1I	GRCGYC	1 cut(s)	271
Hin1II	CATG	1 cut(s)	290
Hin6I	GCGC	1 cut(s)	271
HinP1I	GCGC	1 cut(s)	271
HinfI	GANTC	2 cut(s)	14, 281
HpaII	CCGG	1 cut(s)	205
Hpy188I	TCNGA	3 cut(s)	36, 256, 294
Hpy188III	TCNNGA	1 cut(s)	67
HpyCH4III	ACNGT	1 cut(s)	32
HpyF3I	CTNAG	1 cut(s)	314
Hsp92I	GRCGYC	1 cut(s)	271
Hsp92II	CATG	1 cut(s)	290
HspAI	GCGC	1 cut(s)	271
KasI	GGCGCC	1 cut(s)	270
KspI	CCGCGG	1 cut(s)	158
Kzo9I	GATC	5 cut(s)	63, 75, 134, 265, 294
LmnI	GCTCC	1 cut(s)	159
LpnPI	CCDG	4 cut(s)	24, 159, 218, 236
MaeI	CTAG	1 cut(s)	54
MaeIII	GTNAC	1 cut(s)	190
MalI	GATC	5 cut(s)	65, 77, 136, 267, 296
MbiI	CCGCTC	1 cut(s)	162
MboI	GATC	5 cut(s)	63, 75, 134, 265, 294
MboII	GAAGA	2 cut(s)	70, 140
MflI	RGATCY	3 cut(s)	75, 134, 294
MhlI	GDGCHC	2 cut(s)	111, 222
MluCI	AATT	2 cut(s)	141, 169
Mly113I	GGCGCC	1 cut(s)	271
MmeI	TCCRAC	2 cut(s)	42, 48
MnlI	CCTC	5 cut(s)	50, 53, 57, 60, 309
MroXI	GAANNNNTTC	1 cut(s)	170
MspA1I	CMGCKG	3 cut(s)	98, 149, 157
MspI	CCGG	1 cut(s)	205
MvnI	CGCG	1 cut(s)	157
NarI	GGCGCC	1 cut(s)	271
NdeII	GATC	5 cut(s)	63, 75, 134, 265, 294
NlaIII	CATG	1 cut(s)	290
NlaIV	GGNNCC	2 cut(s)	136, 272
PdmI	GAANNNNTTC	1 cut(s)	170
PfeI	GAWTC	2 cut(s)	14, 281
Ple19I	CGATCG	1 cut(s)	268
PluTI	GGCGCC	1 cut(s)	274
PspN4I	GGNNCC	2 cut(s)	136, 272
PsuI	RGATCY	3 cut(s)	75, 134, 294
PvuI	CGATCG	1 cut(s)	268
PvuII	CAGCTG	1 cut(s)	149
SacII	CCGCGG	1 cut(s)	158
Sau3AI	GATC	5 cut(s)	63, 75, 134, 265, 294
SduI	GDGCHC	2 cut(s)	111, 222
SetI	ASST	4 cut(s)	151, 241, 279, 315
SfoI	GGCGCC	1 cut(s)	272
Sfr303I	CCGCGG	1 cut(s)	158
SgrBI	CCGCGG	1 cut(s)	158
SmlI	CTYRAG	1 cut(s)	304
SmoI	CTYRAG	1 cut(s)	304
Sse9I	AATT	2 cut(s)	141, 169
SsiI	CCGC	5 cut(s)	98, 155, 157, 162, 319
SspDI	GGCGCC	1 cut(s)	270
SspMI	CTAG	1 cut(s)	54
StyI	CCWWGG	1 cut(s)	235
TaaI	ACNGT	1 cut(s)	32
TasI	AATT	2 cut(s)	141, 169
TfiI	GAWTC	2 cut(s)	14, 281
TscAI	CASTG	1 cut(s)	93
TspRI	CASTG	1 cut(s)	93
XagI	CCTNNNNNAGG	1 cut(s)	54
XapI	RAATTY	1 cut(s)	141
XmnI	GAANNNNTTC	1 cut(s)	170
XspI	CTAG	1 cut(s)	54

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.