RchiOBHm_Chr5g0061701

No description available

Basic Information

Type: gene
Biological Identity
rosa_chinensis
5
Physical Location & Seq
Forward (+)
67298847 .. 67299391
545 bp
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UTR
Exon/CDS
Intron
PRQ33804

Sequence Viewer

Length: 204 bp
ATGGAAATCCCAGAATCCAACTCCAACCACTGCCTAAAACGCCTCCCTCCTCCTAGAGGGCAGATCAAGAAAAAGATCTTCAAATCAATGGCTTCAGTGGTGGGTGGGTTCATTCGCAAGCCCAAAGAAGATGGATCCCAAATTCCAGCTGAACCGCGGAGCGGGTACTCCTCAGATGCTCAATCCGAAAGTTCCATGAATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

67

Amino Acids

7.36

Weight (kDa)

9.58

Isoelectric Point (pI)

60.27

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 162
AccII CGCG 1 cut(s) 157
AciI CCGC 3 cut(s) 155, 157, 162
AclWI GGATC 2 cut(s) 129, 142
AcsI RAATTY 1 cut(s) 141
AcuI CTGAAG 1 cut(s) 78
AfaI GTAC 1 cut(s) 167
AfiI CCNNNNNNNGG 2 cut(s) 56, 161
AgsI TTSAA 1 cut(s) 82
AluBI AGCT 1 cut(s) 149
AluI AGCT 1 cut(s) 149
AlwI GGATC 2 cut(s) 129, 142
ApoI RAATTY 1 cut(s) 141
BamHI GGATCC 1 cut(s) 134
BccI CCATC 1 cut(s) 125
BfaI CTAG 1 cut(s) 54
BglII AGATCT 1 cut(s) 75
BmiI GGNNCC 1 cut(s) 136
BmsI GCATC 1 cut(s) 166
BsaJI CCNNGG 1 cut(s) 155
Bsc4I CCNNNNNNNGG 2 cut(s) 56, 161
BseDI CCNNGG 1 cut(s) 155
BseLI CCNNNNNNNGG 2 cut(s) 56, 161
BseMII CTCAG 1 cut(s) 186
BseRI GAGGAG 2 cut(s) 39, 160
Bsh1236I CGCG 1 cut(s) 157
BslI CCNNNNNNNGG 2 cut(s) 56, 161
Bsp143I GATC 3 cut(s) 63, 75, 134
BspACI CCGC 3 cut(s) 155, 157, 162
BspCNI CTCAG 1 cut(s) 185
BspFNI CGCG 1 cut(s) 157
BspLI GGNNCC 1 cut(s) 136
BspPI GGATC 2 cut(s) 129, 142
BsrBI CCGCTC 1 cut(s) 162
BssECI CCNNGG 1 cut(s) 155
BssMI GATC 3 cut(s) 63, 75, 134
BstC8I GCNNGC 1 cut(s) 119
BstDEI CTNAG 1 cut(s) 172
BstDSI CCRYGG 1 cut(s) 155
BstENI CCTNNNNNAGG 1 cut(s) 54
BstFNI CGCG 1 cut(s) 157
BstKTI GATC 3 cut(s) 66, 78, 137
BstMBI GATC 3 cut(s) 63, 75, 134
BstMWI GCNNNNNNNGC 1 cut(s) 39
BstUI CGCG 1 cut(s) 157
BstX2I RGATCY 2 cut(s) 75, 134
BstYI RGATCY 2 cut(s) 75, 134
BtgI CCRYGG 1 cut(s) 155
BtsI GCAGTG 1 cut(s) 28
BtsIMutI CAGTG 2 cut(s) 28, 102
Cac8I GCNNGC 1 cut(s) 119
Cfr42I CCGCGG 1 cut(s) 158
Csp6I GTAC 1 cut(s) 166
CviAII CATG 1 cut(s) 196
CviJI RGCY 3 cut(s) 92, 121, 149
CviKI_1 RGCY 3 cut(s) 92, 121, 149
CviQI GTAC 1 cut(s) 166
DdeI CTNAG 1 cut(s) 172
DpnI GATC 3 cut(s) 65, 77, 136
DpnII GATC 3 cut(s) 63, 75, 134
Eco57I CTGAAG 1 cut(s) 78
EcoNI CCTNNNNNAGG 1 cut(s) 54
FaeI CATG 1 cut(s) 199
FaiI YATR 1 cut(s) 197
FatI CATG 1 cut(s) 195
FauI CCCGC 1 cut(s) 155
FspBI CTAG 1 cut(s) 54
Hin1II CATG 1 cut(s) 199
HinfI GANTC 1 cut(s) 14
Hpy188I TCNGA 2 cut(s) 175, 187
Hpy188III TCNNGA 1 cut(s) 67
HpyF10VI GCNNNNNNNGC 1 cut(s) 39
HpyF3I CTNAG 1 cut(s) 172
Hsp92II CATG 1 cut(s) 199
KspI CCGCGG 1 cut(s) 158
Kzo9I GATC 3 cut(s) 63, 75, 134
LmnI GCTCC 1 cut(s) 159
LpnPI CCDG 2 cut(s) 24, 159
LweI GCATC 1 cut(s) 166
MaeI CTAG 1 cut(s) 54
MalI GATC 3 cut(s) 65, 77, 136
MbiI CCGCTC 1 cut(s) 162
MboI GATC 3 cut(s) 63, 75, 134
MboII GAAGA 2 cut(s) 70, 140
MflI RGATCY 2 cut(s) 75, 134
MluCI AATT 2 cut(s) 141, 199
MmeI TCCRAC 2 cut(s) 42, 48
MnlI CCTC 5 cut(s) 50, 53, 57, 60, 181
MspA1I CMGCKG 2 cut(s) 149, 157
MvnI CGCG 1 cut(s) 157
MwoI GCNNNNNNNGC 1 cut(s) 39
NdeII GATC 3 cut(s) 63, 75, 134
NlaIII CATG 1 cut(s) 199
NlaIV GGNNCC 1 cut(s) 136
PfeI GAWTC 1 cut(s) 14
PspN4I GGNNCC 1 cut(s) 136
PsuI RGATCY 2 cut(s) 75, 134
PvuII CAGCTG 1 cut(s) 149
RsaI GTAC 1 cut(s) 167
RsaNI GTAC 1 cut(s) 166
SacII CCGCGG 1 cut(s) 158
Sau3AI GATC 3 cut(s) 63, 75, 134
SetI ASST 1 cut(s) 151
SfaNI GCATC 1 cut(s) 166
Sfr303I CCGCGG 1 cut(s) 158
SgeI CNNG 7 cut(s) 23, 66, 79, 130, 158, 168, 175
SgrBI CCGCGG 1 cut(s) 158
Sse9I AATT 2 cut(s) 141, 199
SsiI CCGC 3 cut(s) 155, 157, 162
SspMI CTAG 1 cut(s) 54
TasI AATT 2 cut(s) 141, 199
TfiI GAWTC 1 cut(s) 14
TscAI CASTG 2 cut(s) 35, 102
TspDTI ATGAA 1 cut(s) 100
TspRI CASTG 2 cut(s) 35, 102
XagI CCTNNNNNAGG 1 cut(s) 54
XapI RAATTY 1 cut(s) 141
XspI CTAG 1 cut(s) 54
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.