Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5B

Orthogroup ID

OG0004205

Physical Location & Seq

Genomic Coordinates Forward (+)

67597666 .. 67598263

Gene Structure 598 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5BG416700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 300 bp

ATGGAAATCCCAGAATCCAACTCCAACCACTGCCTGAAACGCCTCCCTCCTCCTAGAGGGCAGATCAAGAAAAAGATCTTCAAATCAGTGGTTTCAGCGGTGGGTGGGCTCATTAGCAAACCGAAAGAAGATGGATCCCAAATTCCAGCTGAACCGCGGAGCGGCTGTTACTTTTCAACTCCGGCGAGTTTCTGTGCCCCTGAACCAATTCCAAAGTCATTTTTTACTCTCTTGGACGCCGATCGGCGCCACCTTGATTCTCATGTTCAGATCTTTGCCTTGAGCAAGCTGAGGCGGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

99

Amino Acids

11.0

Weight (kDa)

9.72

Isoelectric Point (pI)

53.65

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0004205)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G45730
fragaria_vesca	FvH4_3g34010 FvH4_3g34020 FvH4_3g34080
prunus_persica	Prupe.6G090700_v2.0.a1 Prupe.6G090800_v2.0.a1
pyrus_communis	pycom01g14210 pycom03g08710 pycom03g08740 pycom11g10190 pycom11g10200 pycom11g10210
rosa_chinensis	RchiOBHm_Chr5g0061611 RchiOBHm_Chr5g0061631 RchiOBHm_Chr5g0061691 RchiOBHm_Chr5g0061701 RchiOBHm_Chr5g0061721 RchiOBHm_Chr5g0061731 RchiOBHm_Chr5g0061741
rosa_laevigata	RLG00000035494 RLG00000035498
rosa_roxburghii	Rroxscaffold_1G00019040 Rroxscaffold_1G00019060 Rroxscaffold_1G00019100
rosa_rugosa	Rorug05G0342000.1 Rorug05G0342100
rosa_samantha	Rh1AG005100 Rh5AG404000 Rh5BG416700 Rh5CG441200 Rh5DG430800 Rh5DG431000 Rh7CG345100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	246
AccBSI	CCGCTC	1 cut(s)	162
AccII	CGCG	1 cut(s)	157
AciI	CCGC	5 cut(s)	98, 155, 157, 162, 295
AclWI	GGATC	2 cut(s)	129, 142
AcsI	RAATTY	1 cut(s)	141
AcyI	GRCGYC	2 cut(s)	237, 247
AfiI	CCNNNNNNNGG	2 cut(s)	56, 161
AgsI	TTSAA	2 cut(s)	82, 177
AluBI	AGCT	2 cut(s)	149, 289
AluI	AGCT	2 cut(s)	149, 289
AlwI	GGATC	2 cut(s)	129, 142
ApoI	RAATTY	1 cut(s)	141
Asp700I	GAANNNNTTC	1 cut(s)	207
AspLEI	GCGC	1 cut(s)	249
BaeGI	GKGCMC	1 cut(s)	199
BamHI	GGATCC	1 cut(s)	134
BanI	GGYRCC	1 cut(s)	246
BanII	GRGCYC	1 cut(s)	111
BbvCI	CCTCAGC	1 cut(s)	290
BccI	CCATC	1 cut(s)	125
BfaI	CTAG	1 cut(s)	54
BfoI	RGCGCY	1 cut(s)	250
BglII	AGATCT	2 cut(s)	75, 270
BisI	GCNGC	1 cut(s)	163
BlsI	GCNGC	1 cut(s)	164
BmiI	GGNNCC	2 cut(s)	136, 248
Bpu10I	CCTNAGC	1 cut(s)	290
BsaHI	GRCGYC	2 cut(s)	237, 247
BsaJI	CCNNGG	1 cut(s)	155
BsaXI	ACNNNNNCTCC	2 cut(s)	151, 181
Bsc4I	CCNNNNNNNGG	2 cut(s)	56, 161
BseDI	CCNNGG	1 cut(s)	155
BseLI	CCNNNNNNNGG	2 cut(s)	56, 161
BseMII	CTCAG	1 cut(s)	281
BseRI	GAGGAG	1 cut(s)	39
BseSI	GKGCMC	1 cut(s)	199
Bsh1236I	CGCG	1 cut(s)	157
Bsh1285I	CGRYCG	1 cut(s)	244
BshNI	GGYRCC	1 cut(s)	246
BsiEI	CGRYCG	1 cut(s)	244
BsiSI	CCGG	1 cut(s)	182
BslI	CCNNNNNNNGG	2 cut(s)	56, 161
Bsp1286I	GDGCHC	2 cut(s)	111, 199
Bsp143I	GATC	5 cut(s)	63, 75, 134, 241, 270
BspACI	CCGC	5 cut(s)	98, 155, 157, 162, 295
BspCNI	CTCAG	1 cut(s)	282
BspFNI	CGCG	1 cut(s)	157
BspLI	GGNNCC	2 cut(s)	136, 248
BspPI	GGATC	2 cut(s)	129, 142
BspT107I	GGYRCC	1 cut(s)	246
BsrBI	CCGCTC	1 cut(s)	162
BssECI	CCNNGG	1 cut(s)	155
BssMI	GATC	5 cut(s)	63, 75, 134, 241, 270
BssNI	GRCGYC	2 cut(s)	237, 247
BstACI	GRCGYC	2 cut(s)	237, 247
BstC8I	GCNNGC	1 cut(s)	287
BstDEI	CTNAG	1 cut(s)	290
BstDSI	CCRYGG	1 cut(s)	155
BstENI	CCTNNNNNAGG	1 cut(s)	54
BstFNI	CGCG	1 cut(s)	157
BstH2I	RGCGCY	1 cut(s)	250
BstHHI	GCGC	1 cut(s)	249
BstKTI	GATC	5 cut(s)	66, 78, 137, 244, 273
BstMBI	GATC	5 cut(s)	63, 75, 134, 241, 270
BstMCI	CGRYCG	1 cut(s)	244
BstMWI	GCNNNNNNNGC	1 cut(s)	39
BstSLI	GKGCMC	1 cut(s)	199
BstUI	CGCG	1 cut(s)	157
BstX2I	RGATCY	3 cut(s)	75, 134, 270
BstYI	RGATCY	3 cut(s)	75, 134, 270
BtgI	CCRYGG	1 cut(s)	155
BtsI	GCAGTG	1 cut(s)	28
BtsIMutI	CAGTG	2 cut(s)	28, 93
Cac8I	GCNNGC	1 cut(s)	287
CfoI	GCGC	1 cut(s)	249
Cfr42I	CCGCGG	1 cut(s)	158
CseI	GACGC	1 cut(s)	245
CviAII	CATG	1 cut(s)	263
CviJI	RGCY	4 cut(s)	109, 149, 165, 289
CviKI_1	RGCY	4 cut(s)	109, 149, 165, 289
DdeI	CTNAG	1 cut(s)	290
DinI	GGCGCC	1 cut(s)	248
DpnI	GATC	5 cut(s)	65, 77, 136, 243, 272
DpnII	GATC	5 cut(s)	63, 75, 134, 241, 270
Eco24I	GRGCYC	1 cut(s)	111
EcoNI	CCTNNNNNAGG	1 cut(s)	54
EcoT38I	GRGCYC	1 cut(s)	111
EgeI	GGCGCC	1 cut(s)	248
EheI	GGCGCC	1 cut(s)	248
FaeI	CATG	1 cut(s)	266
FaiI	YATR	1 cut(s)	264
FatI	CATG	1 cut(s)	262
Fnu4HI	GCNGC	1 cut(s)	163
FriOI	GRGCYC	1 cut(s)	111
Fsp4HI	GCNGC	1 cut(s)	163
FspBI	CTAG	1 cut(s)	54
GlaI	GCGC	1 cut(s)	248
GluI	GCNGC	1 cut(s)	163
HaeII	RGCGCY	1 cut(s)	250
HapII	CCGG	1 cut(s)	182
HgaI	GACGC	1 cut(s)	245
HhaI	GCGC	1 cut(s)	249
Hin1I	GRCGYC	2 cut(s)	237, 247
Hin1II	CATG	1 cut(s)	266
Hin6I	GCGC	1 cut(s)	247
HinP1I	GCGC	1 cut(s)	247
HinfI	GANTC	2 cut(s)	14, 257
HpaII	CCGG	1 cut(s)	182
Hpy188I	TCNGA	1 cut(s)	270
Hpy188III	TCNNGA	1 cut(s)	67
HpyF10VI	GCNNNNNNNGC	1 cut(s)	39
HpyF3I	CTNAG	1 cut(s)	290
Hsp92I	GRCGYC	2 cut(s)	237, 247
Hsp92II	CATG	1 cut(s)	266
HspAI	GCGC	1 cut(s)	247
KasI	GGCGCC	1 cut(s)	246
KspI	CCGCGG	1 cut(s)	158
Kzo9I	GATC	5 cut(s)	63, 75, 134, 241, 270
LmnI	GCTCC	1 cut(s)	159
LpnPI	CCDG	5 cut(s)	24, 47, 159, 195, 213
MaeI	CTAG	1 cut(s)	54
MaeIII	GTNAC	1 cut(s)	167
MalI	GATC	5 cut(s)	65, 77, 136, 243, 272
MbiI	CCGCTC	1 cut(s)	162
MboI	GATC	5 cut(s)	63, 75, 134, 241, 270
MboII	GAAGA	2 cut(s)	70, 140
MflI	RGATCY	3 cut(s)	75, 134, 270
MhlI	GDGCHC	2 cut(s)	111, 199
MluCI	AATT	2 cut(s)	141, 207
Mly113I	GGCGCC	1 cut(s)	247
MmeI	TCCRAC	2 cut(s)	42, 48
MnlI	CCTC	5 cut(s)	50, 53, 57, 60, 285
MroXI	GAANNNNTTC	1 cut(s)	207
MspA1I	CMGCKG	3 cut(s)	98, 149, 157
MspI	CCGG	1 cut(s)	182
MvnI	CGCG	1 cut(s)	157
MwoI	GCNNNNNNNGC	1 cut(s)	39
NarI	GGCGCC	1 cut(s)	247
NdeII	GATC	5 cut(s)	63, 75, 134, 241, 270
NlaIII	CATG	1 cut(s)	266
NlaIV	GGNNCC	2 cut(s)	136, 248
PdmI	GAANNNNTTC	1 cut(s)	207
PfeI	GAWTC	2 cut(s)	14, 257
PkrI	GCNGC	1 cut(s)	164
Ple19I	CGATCG	1 cut(s)	244
PluTI	GGCGCC	1 cut(s)	250
PspN4I	GGNNCC	2 cut(s)	136, 248
PsuI	RGATCY	3 cut(s)	75, 134, 270
PvuI	CGATCG	1 cut(s)	244
PvuII	CAGCTG	1 cut(s)	149
SacII	CCGCGG	1 cut(s)	158
SatI	GCNGC	1 cut(s)	163
Sau3AI	GATC	5 cut(s)	63, 75, 134, 241, 270
SduI	GDGCHC	2 cut(s)	111, 199
SetI	ASST	3 cut(s)	151, 255, 291
SfoI	GGCGCC	1 cut(s)	248
Sfr303I	CCGCGG	1 cut(s)	158
SgrBI	CCGCGG	1 cut(s)	158
SmlI	CTYRAG	1 cut(s)	280
SmoI	CTYRAG	1 cut(s)	280
Sse9I	AATT	2 cut(s)	141, 207
SsiI	CCGC	5 cut(s)	98, 155, 157, 162, 295
SspDI	GGCGCC	1 cut(s)	246
SspMI	CTAG	1 cut(s)	54
TasI	AATT	2 cut(s)	141, 207
TauI	GCSGC	1 cut(s)	165
TfiI	GAWTC	2 cut(s)	14, 257
TscAI	CASTG	2 cut(s)	35, 93
TspRI	CASTG	2 cut(s)	35, 93
XagI	CCTNNNNNAGG	1 cut(s)	54
XapI	RAATTY	1 cut(s)	141
XmnI	GAANNNNTTC	1 cut(s)	207
XspI	CTAG	1 cut(s)	54

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.