pycom03g08740

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr3
OG0004205
Physical Location & Seq
Reverse (-)
7136107 .. 7136391
285 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom03g08740.1

Sequence Viewer

Length: 285 bp
ATGTCGAATTCGAAAAAACTGGAAATCCCAGGTTCCAAGTCCAAGCACAGCCGAAATCGAAGGCTCCCTCCCAGGAGGGGACAGATCAAGATCAAGATATTCAATGAATTGGTCAAGTTCTTGGCTCCCATGGCGGGCGGGGGAGCTCGAAAGCCGAGGGAAAATGGAGGAGGGTTCCTGAGCTCCAGCTCCCAAACCCCAGCTGAAACCCCAAGTGGGTACTGCTCCGATGCTCAGTCTGATCGCTCGATCCCTCATTTTCTGAAAATTGAGGTTCTTGATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

95

Amino Acids

10.29

Weight (kDa)

10.34

Isoelectric Point (pI)

54.53

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 134, 138
AclWI GGATC 1 cut(s) 244
AcsI RAATTY 1 cut(s) 7
AfaI GTAC 1 cut(s) 221
AfiI CCNNNNNNNGG 3 cut(s) 77, 134, 216
AgsI TTSAA 1 cut(s) 103
AjnI CCWGG 2 cut(s) 28, 71
AluBI AGCT 4 cut(s) 146, 183, 189, 203
AluI AGCT 4 cut(s) 146, 183, 189, 203
Alw21I GWGCWC 2 cut(s) 148, 185
AlwI GGATC 1 cut(s) 244
ApoI RAATTY 1 cut(s) 7
AsuII TTCGAA 1 cut(s) 11
BanII GRGCYC 2 cut(s) 148, 185
Bbv12I GWGCWC 2 cut(s) 148, 185
BciT130I CCWGG 2 cut(s) 30, 73
Bme1390I CCNGG 2 cut(s) 30, 73
BmiI GGNNCC 4 cut(s) 34, 65, 126, 176
BmrFI CCNGG 2 cut(s) 30, 73
BmsI GCATC 1 cut(s) 220
BpmI CTGGAG 1 cut(s) 169
Bpu10I CCTNAGC 1 cut(s) 179
Bpu14I TTCGAA 1 cut(s) 11
BsaBI GATNNNNATC 1 cut(s) 89
BsaJI CCNNGG 4 cut(s) 28, 71, 129, 155
Bsc4I CCNNNNNNNGG 3 cut(s) 77, 134, 216
Bse1I ACTGG 1 cut(s) 24
Bse8I GATNNNNATC 1 cut(s) 89
BseBI CCWGG 2 cut(s) 30, 73
BseDI CCNNGG 4 cut(s) 28, 71, 129, 155
BseJI GATNNNNATC 1 cut(s) 89
BseLI CCNNNNNNNGG 3 cut(s) 77, 134, 216
BseMII CTCAG 2 cut(s) 170, 248
BseNI ACTGG 1 cut(s) 24
BseRI GAGGAG 1 cut(s) 183
BseYI CCCAGC 1 cut(s) 199
BsiHKAI GWGCWC 2 cut(s) 148, 185
BslFI GGGAC 1 cut(s) 93
BslI CCNNNNNNNGG 3 cut(s) 77, 134, 216
BsmFI GGGAC 1 cut(s) 93
Bsp119I TTCGAA 1 cut(s) 11
Bsp1286I GDGCHC 2 cut(s) 148, 185
Bsp143I GATC 4 cut(s) 84, 90, 241, 249
Bsp19I CCATGG 1 cut(s) 129
BspACI CCGC 2 cut(s) 134, 138
BspCNI CTCAG 2 cut(s) 171, 247
BspLI GGNNCC 4 cut(s) 34, 65, 126, 176
BspPI GGATC 1 cut(s) 244
BspT104I TTCGAA 1 cut(s) 11
BsrI ACTGG 1 cut(s) 24
BssECI CCNNGG 4 cut(s) 28, 71, 129, 155
BssMI GATC 4 cut(s) 84, 90, 241, 249
BssT1I CCWWGG 1 cut(s) 129
Bst2UI CCWGG 2 cut(s) 30, 73
BstBI TTCGAA 1 cut(s) 11
BstC8I GCNNGC 1 cut(s) 136
BstDEI CTNAG 2 cut(s) 179, 234
BstDSI CCRYGG 1 cut(s) 129
BstKTI GATC 4 cut(s) 87, 93, 244, 252
BstMBI GATC 4 cut(s) 84, 90, 241, 249
BstMWI GCNNNNNNNGC 1 cut(s) 131
BstNI CCWGG 2 cut(s) 30, 73
BstSCI CCNGG 2 cut(s) 28, 71
BtgI CCRYGG 1 cut(s) 129
Cac8I GCNNGC 1 cut(s) 136
Csp6I GTAC 1 cut(s) 220
CviAII CATG 1 cut(s) 130
CviJI RGCY 8 cut(s) 51, 64, 125, 146, 154, 183, 189, 203
CviKI_1 RGCY 8 cut(s) 51, 64, 125, 146, 154, 183, 189, 203
CviQI GTAC 1 cut(s) 220
DdeI CTNAG 2 cut(s) 179, 234
DpnI GATC 4 cut(s) 86, 92, 243, 251
DpnII GATC 4 cut(s) 84, 90, 241, 249
Ecl136II GAGCTC 2 cut(s) 146, 183
Eco130I CCWWGG 1 cut(s) 129
Eco24I GRGCYC 2 cut(s) 148, 185
Eco53kI GAGCTC 2 cut(s) 146, 183
EcoICRI GAGCTC 2 cut(s) 146, 183
EcoRI GAATTC 1 cut(s) 7
EcoRII CCWGG 2 cut(s) 28, 71
EcoT14I CCWWGG 1 cut(s) 129
EcoT38I GRGCYC 2 cut(s) 148, 185
ErhI CCWWGG 1 cut(s) 129
FaeI CATG 1 cut(s) 133
FaiI YATR 1 cut(s) 131
FaqI GGGAC 1 cut(s) 93
FatI CATG 1 cut(s) 129
FauI CCCGC 2 cut(s) 127, 131
FriOI GRGCYC 2 cut(s) 148, 185
GsaI CCCAGC 1 cut(s) 203
GsuI CTGGAG 1 cut(s) 169
Hin1II CATG 1 cut(s) 133
Hpy188I TCNGA 3 cut(s) 229, 241, 264
Hpy188III TCNNGA 4 cut(s) 88, 94, 178, 278
HpyAV CCTTC 1 cut(s) 54
HpyF10VI GCNNNNNNNGC 1 cut(s) 131
HpyF3I CTNAG 2 cut(s) 179, 234
Hsp92II CATG 1 cut(s) 133
Kzo9I GATC 4 cut(s) 84, 90, 241, 249
LmnI GCTCC 6 cut(s) 69, 130, 143, 188, 194, 230
LpnPI CCDG 8 cut(s) 5, 15, 42, 58, 85, 191, 199, 213
LweI GCATC 1 cut(s) 220
MalI GATC 4 cut(s) 86, 92, 243, 251
MboI GATC 4 cut(s) 84, 90, 241, 249
MhlI GDGCHC 2 cut(s) 148, 185
MluCI AATT 3 cut(s) 7, 107, 267
MnlI CCTC 7 cut(s) 69, 78, 150, 161, 164, 264, 265
MseI TTAA 1 cut(s) 283
MspA1I CMGCKG 1 cut(s) 203
MspR9I CCNGG 2 cut(s) 30, 73
MvaI CCWGG 2 cut(s) 30, 73
MwoI GCNNNNNNNGC 1 cut(s) 131
NcoI CCATGG 1 cut(s) 129
NdeII GATC 4 cut(s) 84, 90, 241, 249
NlaIII CATG 1 cut(s) 133
NlaIV GGNNCC 4 cut(s) 34, 65, 126, 176
NmeAIII GCCGAG 1 cut(s) 180
NspV TTCGAA 1 cut(s) 11
Psp124BI GAGCTC 2 cut(s) 148, 185
Psp6I CCWGG 2 cut(s) 28, 71
PspFI CCCAGC 1 cut(s) 199
PspGI CCWGG 2 cut(s) 28, 71
PspN4I GGNNCC 4 cut(s) 34, 65, 126, 176
PvuII CAGCTG 1 cut(s) 203
RsaI GTAC 1 cut(s) 221
RsaNI GTAC 1 cut(s) 220
SacI GAGCTC 2 cut(s) 148, 185
SaqAI TTAA 1 cut(s) 283
Sau3AI GATC 4 cut(s) 84, 90, 241, 249
ScrFI CCNGG 2 cut(s) 30, 73
SduI GDGCHC 2 cut(s) 148, 185
SetI ASST 6 cut(s) 34, 148, 185, 191, 205, 276
SfaNI GCATC 1 cut(s) 220
SfuI TTCGAA 1 cut(s) 11
Sse9I AATT 3 cut(s) 7, 107, 267
SsiI CCGC 2 cut(s) 134, 138
SstI GAGCTC 2 cut(s) 148, 185
StyD4I CCNGG 2 cut(s) 28, 71
StyI CCWWGG 1 cut(s) 129
TaqI TCGA 5 cut(s) 5, 11, 58, 148, 248
TasI AATT 3 cut(s) 7, 107, 267
Tru1I TTAA 1 cut(s) 283
Tru9I TTAA 1 cut(s) 283
TspDTI ATGAA 1 cut(s) 120
XapI RAATTY 1 cut(s) 7
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.