RLG00000035498

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr7
OG0004205
Physical Location & Seq
Forward (+)
67706686 .. 67709327
2642 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000035498

Sequence Viewer

Length: 432 bp
ATGGAAAACCCAAACACCATATCCAAAAACCGCAAGCAAAGCCTCTACCTTCCCAGGAGAGGGCAGGTCAAGATCAAGATATTCAAGTGCTTGTTCAAGTCGTTGGCTTCGATGTTGGGTGCGTTTGCCCGGAAGCCAGCCGGAGAAGATGGAGGGTTCTTGAGCTCCAATTCCCAAACTCCGGCTGAAACCCCAATCTCTCACAAATTCTCGCCGAGCTGTGAACCCCAACCAGCCTCGTCTTGCCAGCAGCCTCAGTTCTACAGTGGAGCAGCTGTTTGGAGCTCCGATTCGAACCCGAAATCGAGGCCGAGAGAGAAGATGATCCAATCCAGGGATAAGCTGATCCGATCTAGGGAGAAGACAACGTCGGCTGGTGGGCTTGGGGATGTTTTTCGGTGGCAGCTGAGCGAAGATGACGTCGGCCGGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

144

Amino Acids

15.87

Weight (kDa)

9.91

Isoelectric Point (pI)

64.38

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 423
Acc36I ACCTGC 1 cut(s) 55
AciI CCGC 1 cut(s) 31
AclWI GGATC 2 cut(s) 319, 340
AcoI YGGCCR 1 cut(s) 424
AcsI RAATTY 1 cut(s) 206
AcyI GRCGYC 1 cut(s) 420
AfiI CCNNNNNNNGG 5 cut(s) 59, 60, 181, 334, 355
AgsI TTSAA 2 cut(s) 85, 97
AjnI CCWGG 2 cut(s) 53, 332
AluBI AGCT 6 cut(s) 165, 219, 275, 285, 343, 406
AluI AGCT 6 cut(s) 165, 219, 275, 285, 343, 406
Alw21I GWGCWC 2 cut(s) 167, 287
AlwI GGATC 2 cut(s) 319, 340
AoxI GGCC 2 cut(s) 308, 424
ApeKI GCWGC 3 cut(s) 250, 272, 403
ApoI RAATTY 1 cut(s) 206
ArsI GACNNNNNNTTYG 1 cut(s) 405
AsuC2I CCSGG 1 cut(s) 130
AsuII TTCGAA 1 cut(s) 293
BanII GRGCYC 2 cut(s) 167, 287
BbsI GAAGAC 1 cut(s) 368
Bbv12I GWGCWC 2 cut(s) 167, 287
BbvI GCAGC 3 cut(s) 262, 284, 415
BccI CCATC 1 cut(s) 143
BciT130I CCWGG 2 cut(s) 55, 334
BcnI CCSGG 1 cut(s) 130
BfaI CTAG 1 cut(s) 354
BfmI CTRYAG 1 cut(s) 262
BfuAI ACCTGC 1 cut(s) 55
BisI GCNGC 3 cut(s) 251, 273, 404
BlpI GCTNAGC 1 cut(s) 407
BlsI GCNGC 3 cut(s) 252, 274, 405
Bme1390I CCNGG 3 cut(s) 55, 130, 334
BmrFI CCNGG 3 cut(s) 55, 130, 334
BpiI GAAGAC 1 cut(s) 368
Bpu1102I GCTNAGC 1 cut(s) 407
Bpu14I TTCGAA 1 cut(s) 293
BpuEI CTTGAG 1 cut(s) 181
BpuMI CCSGG 1 cut(s) 130
BsaHI GRCGYC 1 cut(s) 420
BsaJI CCNNGG 2 cut(s) 53, 333
BsaXI ACNNNNNCTCC 2 cut(s) 261, 291
Bsc4I CCNNNNNNNGG 5 cut(s) 59, 60, 181, 334, 355
Bse118I RCCGGY 1 cut(s) 426
BseBI CCWGG 2 cut(s) 55, 334
BseDI CCNNGG 2 cut(s) 53, 333
BseGI GGATG 1 cut(s) 394
BseLI CCNNNNNNNGG 5 cut(s) 59, 60, 181, 334, 355
BseMII CTCAG 2 cut(s) 269, 398
BseX3I CGGCCG 1 cut(s) 424
BseXI GCAGC 3 cut(s) 262, 284, 415
Bsh1285I CGRYCG 1 cut(s) 427
BshFI GGCC 2 cut(s) 310, 426
BsiEI CGRYCG 1 cut(s) 427
BsiHKAI GWGCWC 2 cut(s) 167, 287
BsiSI CCGG 4 cut(s) 130, 141, 182, 427
BslI CCNNNNNNNGG 5 cut(s) 59, 60, 181, 334, 355
BsnI GGCC 2 cut(s) 310, 426
Bsp119I TTCGAA 1 cut(s) 293
Bsp1286I GDGCHC 2 cut(s) 167, 287
Bsp143I GATC 4 cut(s) 72, 324, 345, 350
Bsp1720I GCTNAGC 1 cut(s) 407
BspACI CCGC 1 cut(s) 31
BspANI GGCC 2 cut(s) 310, 426
BspCNI CTCAG 2 cut(s) 268, 399
BspMI ACCTGC 1 cut(s) 55
BspPI GGATC 2 cut(s) 319, 340
BspT104I TTCGAA 1 cut(s) 293
BsrFI RCCGGY 1 cut(s) 426
BssAI RCCGGY 1 cut(s) 426
BssECI CCNNGG 2 cut(s) 53, 333
BssMI GATC 4 cut(s) 72, 324, 345, 350
BssNI GRCGYC 1 cut(s) 420
Bst2UI CCWGG 2 cut(s) 55, 334
Bst4CI ACNGT 1 cut(s) 266
BstACI GRCGYC 1 cut(s) 420
BstBI TTCGAA 1 cut(s) 293
BstC8I GCNNGC 3 cut(s) 35, 138, 248
BstDEI CTNAG 2 cut(s) 255, 407
BstF5I GGATG 1 cut(s) 394
BstKTI GATC 4 cut(s) 75, 327, 348, 353
BstMBI GATC 4 cut(s) 72, 324, 345, 350
BstMCI CGRYCG 1 cut(s) 427
BstMWI GCNNNNNNNGC 1 cut(s) 39
BstNI CCWGG 2 cut(s) 55, 334
BstSCI CCNGG 3 cut(s) 53, 128, 332
BstSFI CTRYAG 1 cut(s) 262
BstV1I GCAGC 3 cut(s) 262, 284, 415
BstV2I GAAGAC 1 cut(s) 368
BstZI CGGCCG 1 cut(s) 424
BsuRI GGCC 2 cut(s) 310, 426
BtsCI GGATG 1 cut(s) 394
BtsIMutI CAGTG 1 cut(s) 271
BveI ACCTGC 1 cut(s) 55
Cac8I GCNNGC 3 cut(s) 35, 138, 248
Cfr10I RCCGGY 1 cut(s) 426
DdeI CTNAG 2 cut(s) 255, 407
DpnI GATC 4 cut(s) 74, 326, 347, 352
DpnII GATC 4 cut(s) 72, 324, 345, 350
EaeI YGGCCR 1 cut(s) 424
EagI CGGCCG 1 cut(s) 424
Ecl136II GAGCTC 2 cut(s) 165, 285
EclXI CGGCCG 1 cut(s) 424
Eco24I GRGCYC 2 cut(s) 167, 287
Eco52I CGGCCG 1 cut(s) 424
Eco53kI GAGCTC 2 cut(s) 165, 285
EcoICRI GAGCTC 2 cut(s) 165, 285
EcoRII CCWGG 2 cut(s) 53, 332
EcoT38I GRGCYC 2 cut(s) 167, 287
FaiI YATR 1 cut(s) 20
Fnu4HI GCNGC 3 cut(s) 251, 273, 404
FokI GGATG 1 cut(s) 401
FriOI GRGCYC 2 cut(s) 167, 287
Fsp4HI GCNGC 3 cut(s) 251, 273, 404
FspBI CTAG 1 cut(s) 354
GluI GCNGC 3 cut(s) 251, 273, 404
HaeIII GGCC 2 cut(s) 310, 426
HapII CCGG 4 cut(s) 130, 141, 182, 427
Hin1I GRCGYC 1 cut(s) 420
HinfI GANTC 1 cut(s) 290
HpaII CCGG 4 cut(s) 130, 141, 182, 427
Hpy166II GTNNAC 1 cut(s) 224
Hpy188I TCNGA 2 cut(s) 289, 350
Hpy188III TCNNGA 3 cut(s) 70, 76, 160
Hpy8I GTNNAC 1 cut(s) 224
Hpy99I CGWCG 2 cut(s) 373, 425
HpyAV CCTTC 1 cut(s) 59
HpyCH4III ACNGT 1 cut(s) 266
HpyCH4IV ACGT 2 cut(s) 368, 420
HpyF10VI GCNNNNNNNGC 1 cut(s) 39
HpyF3I CTNAG 2 cut(s) 255, 407
HpySE526I ACGT 2 cut(s) 368, 420
Hsp92I GRCGYC 1 cut(s) 420
Kzo9I GATC 4 cut(s) 72, 324, 345, 350
LmnI GCTCC 4 cut(s) 170, 269, 282, 290
Lsp1109I GCAGC 3 cut(s) 262, 284, 415
MaeI CTAG 1 cut(s) 354
MaeII ACGT 2 cut(s) 368, 420
MalI GATC 4 cut(s) 74, 326, 347, 352
MboI GATC 4 cut(s) 72, 324, 345, 350
MboII GAAGA 4 cut(s) 158, 331, 373, 425
MhlI GDGCHC 2 cut(s) 167, 287
MluCI AATT 2 cut(s) 169, 206
MnlI CCTC 6 cut(s) 53, 53, 146, 247, 264, 300
MspA1I CMGCKG 2 cut(s) 275, 406
MspI CCGG 4 cut(s) 130, 141, 182, 427
MspR9I CCNGG 3 cut(s) 55, 130, 334
MvaI CCWGG 2 cut(s) 55, 334
MwoI GCNNNNNNNGC 1 cut(s) 39
NciI CCSGG 1 cut(s) 130
NdeII GATC 4 cut(s) 72, 324, 345, 350
NmeAIII GCCGAG 2 cut(s) 240, 336
NspV TTCGAA 1 cut(s) 293
PcsI WCGNNNNNNNCGW 1 cut(s) 107
PfeI GAWTC 1 cut(s) 290
PflFI GACNNNGTC 1 cut(s) 367
PkrI GCNGC 3 cut(s) 252, 274, 405
Psp124BI GAGCTC 2 cut(s) 167, 287
Psp6I CCWGG 2 cut(s) 53, 332
PspGI CCWGG 2 cut(s) 53, 332
PsyI GACNNNGTC 1 cut(s) 367
PvuII CAGCTG 2 cut(s) 275, 406
SacI GAGCTC 2 cut(s) 167, 287
SatI GCNGC 3 cut(s) 251, 273, 404
Sau3AI GATC 4 cut(s) 72, 324, 345, 350
ScrFI CCNGG 3 cut(s) 55, 130, 334
SduI GDGCHC 2 cut(s) 167, 287
SfcI CTRYAG 1 cut(s) 262
SfuI TTCGAA 1 cut(s) 293
SmlI CTYRAG 1 cut(s) 160
SmoI CTYRAG 1 cut(s) 160
Sse9I AATT 2 cut(s) 169, 206
SsiI CCGC 1 cut(s) 31
SspMI CTAG 1 cut(s) 354
SstI GAGCTC 2 cut(s) 167, 287
StyD4I CCNGG 3 cut(s) 53, 128, 332
TaaI ACNGT 1 cut(s) 266
TaiI ACGT 2 cut(s) 371, 423
TaqI TCGA 3 cut(s) 110, 293, 305
TasI AATT 2 cut(s) 169, 206
TfiI GAWTC 1 cut(s) 290
TscAI CASTG 1 cut(s) 271
TseI GCWGC 3 cut(s) 250, 272, 403
TspRI CASTG 1 cut(s) 271
Tth111I GACNNNGTC 1 cut(s) 367
XapI RAATTY 1 cut(s) 206
XspI CTAG 1 cut(s) 354
ZraI GACGTC 1 cut(s) 421
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.