Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7C

Orthogroup ID

OG0004205

Physical Location & Seq

Genomic Coordinates Reverse (-)

38937602 .. 38946119

Gene Structure 8518 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7CG345100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 681 bp

ATGCCAGATTACTTTACAATAAAACTTAAAACCAACCCTGACATGTCTTGGGTAATAAAAGTGGCATACTACGGCAAACATGGAGCACAATTCCATTTTGGGTGGGCAACGTTTGTGTCCGACACATCGTTGACGGTTGCACAGTGTGTTAAGTTCAAGTTACTTGAAGGCAAATCAATTTCAGCTATAATATTTGATCGCGAGACAGGGGATGTAGTTATGCATTCGGATGGCCCTCCTAACCAACCTAATCCTTGCACTGGCGGTGTTTCGGATGCAGGTCCTTCATACGTAGTTGGTCCCACTGATGGCATAGAGGAACTCGTTGAAGGAGCTACTGAAGATGTGACGATGGACGACAAAGTTTGGCTAGTTGTTGGTGGCGCCTTTCAATTACATCAGCTTGAAGGATACCCACACTGCAAATGCAAGTTGTATGATCGTCATTGTCAGCCTCAGCCCAACACCGCCATACCCCAACCGGCCTTGTCTTGCCAGCAGCCTCAGTTCTACGGTGGAGCAGCTGTTTGGAGCTCCGATTCGAACCCGAAATCGAGGCCGAGAGAGAAGATGATCCAATCCAGGGAGAAGCTGATCAGATCTAGGGAGAAGACGACGTTGGCCGGTGGGCTTGGGGATGTTTTTCGATGGCGGTTGAGCGAAGATGACATCGGCCGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

226

Amino Acids

25.02

Weight (kDa)

6.07

Isoelectric Point (pI)

39.37

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004205)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G45730
fragaria_vesca	FvH4_3g34010 FvH4_3g34020 FvH4_3g34080
prunus_persica	Prupe.6G090700_v2.0.a1 Prupe.6G090800_v2.0.a1
pyrus_communis	pycom01g14210 pycom03g08710 pycom03g08740 pycom11g10190 pycom11g10200 pycom11g10210
rosa_chinensis	RchiOBHm_Chr5g0061611 RchiOBHm_Chr5g0061631 RchiOBHm_Chr5g0061691 RchiOBHm_Chr5g0061701 RchiOBHm_Chr5g0061721 RchiOBHm_Chr5g0061731 RchiOBHm_Chr5g0061741
rosa_laevigata	RLG00000035494 RLG00000035498
rosa_roxburghii	Rroxscaffold_1G00019040 Rroxscaffold_1G00019060 Rroxscaffold_1G00019100
rosa_rugosa	Rorug05G0342000.1 Rorug05G0342100
rosa_samantha	Rh1AG005100 Rh5AG404000 Rh5BG416700 Rh5CG441200 Rh5DG430800 Rh5DG431000 Rh7CG345100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	269
AccB1I	GGYRCC	1 cut(s)	383
AccII	CGCG	1 cut(s)	201
AciI	CCGC	3 cut(s)	264, 468, 652
AclI	AACGTT	1 cut(s)	110
AclWI	GGATC	1 cut(s)	568
AcoI	YGGCCR	2 cut(s)	621, 673
AcuI	CTGAAG	1 cut(s)	360
AcyI	GRCGYC	1 cut(s)	384
AdeI	CACNNNGTG	1 cut(s)	146
AfiI	CCNNNNNNNGG	3 cut(s)	260, 308, 583
AflIII	ACRYGT	1 cut(s)	42
AgsI	TTSAA	5 cut(s)	157, 167, 329, 392, 407
AjnI	CCWGG	1 cut(s)	581
AjuI	GAANNNNNNNTTGG	2 cut(s)	602, 634
AluBI	AGCT	6 cut(s)	185, 335, 403, 524, 534, 592
AluI	AGCT	6 cut(s)	185, 335, 403, 524, 534, 592
Alw21I	GWGCWC	2 cut(s)	88, 536
Alw26I	GTCTC	1 cut(s)	197
AlwI	GGATC	1 cut(s)	568
AoxI	GGCC	5 cut(s)	232, 483, 557, 621, 673
ApeKI	GCWGC	2 cut(s)	499, 521
AspLEI	GCGC	1 cut(s)	386
AspS9I	GGNCC	3 cut(s)	233, 281, 299
AsuII	TTCGAA	1 cut(s)	542
AvaII	GGWCC	2 cut(s)	281, 299
BanI	GGYRCC	1 cut(s)	383
BanII	GRGCYC	1 cut(s)	536
BbsI	GAAGAC	1 cut(s)	617
Bbv12I	GWGCWC	2 cut(s)	88, 536
BbvCI	CCTCAGC	1 cut(s)	456
BbvI	GCAGC	2 cut(s)	511, 533
BccI	CCATC	4 cut(s)	224, 302, 346, 642
BceAI	ACGGC	1 cut(s)	88
BciT130I	CCWGG	1 cut(s)	583
BciVI	GTATCC	1 cut(s)	404
BclI	TGATCA	1 cut(s)	594
BcoDI	GTCTC	1 cut(s)	197
BfaI	CTAG	2 cut(s)	371, 603
BfoI	RGCGCY	1 cut(s)	387
BfuAI	ACCTGC	1 cut(s)	269
BfuI	GTATCC	1 cut(s)	404
BglII	AGATCT	1 cut(s)	599
BisI	GCNGC	2 cut(s)	500, 522
BlsI	GCNGC	2 cut(s)	501, 523
Bme1390I	CCNGG	1 cut(s)	583
Bme18I	GGWCC	2 cut(s)	281, 299
BmgT120I	GGNCC	3 cut(s)	233, 281, 299
BmiI	GGNNCC	2 cut(s)	301, 385
BmrFI	CCNGG	1 cut(s)	583
BmsI	GCATC	1 cut(s)	265
BpiI	GAAGAC	1 cut(s)	617
Bpu10I	CCTNAGC	1 cut(s)	456
Bpu14I	TTCGAA	1 cut(s)	542
BsaAI	YACGTR	1 cut(s)	292
BsaHI	GRCGYC	1 cut(s)	384
BsaJI	CCNNGG	1 cut(s)	582
BsaXI	ACNNNNNCTCC	2 cut(s)	510, 540
Bsc4I	CCNNNNNNNGG	3 cut(s)	260, 308, 583
Bse118I	RCCGGY	3 cut(s)	481, 623, 675
Bse1I	ACTGG	1 cut(s)	265
BseBI	CCWGG	1 cut(s)	583
BseDI	CCNNGG	1 cut(s)	582
BseGI	GGATG	4 cut(s)	217, 235, 280, 643
BseLI	CCNNNNNNNGG	3 cut(s)	260, 308, 583
BseMII	CTCAG	2 cut(s)	470, 518
BseNI	ACTGG	1 cut(s)	265
BseX3I	CGGCCG	1 cut(s)	673
BseXI	GCAGC	2 cut(s)	511, 533
Bsh1236I	CGCG	1 cut(s)	201
Bsh1285I	CGRYCG	1 cut(s)	676
BshFI	GGCC	5 cut(s)	234, 485, 559, 623, 675
BshNI	GGYRCC	1 cut(s)	383
BsiEI	CGRYCG	1 cut(s)	676
BsiHKAI	GWGCWC	2 cut(s)	88, 536
BsiSI	CCGG	3 cut(s)	482, 624, 676
BslFI	GGGAC	1 cut(s)	285
BslI	CCNNNNNNNGG	3 cut(s)	260, 308, 583
BsmAI	GTCTC	1 cut(s)	197
BsmFI	GGGAC	1 cut(s)	285
BsmI	GAATGC	1 cut(s)	223
BsnI	GGCC	5 cut(s)	234, 485, 559, 623, 675
Bsp119I	TTCGAA	1 cut(s)	542
Bsp1286I	GDGCHC	2 cut(s)	88, 536
Bsp143I	GATC	5 cut(s)	196, 439, 573, 594, 599
Bsp68I	TCGCGA	1 cut(s)	201
BspACI	CCGC	3 cut(s)	264, 468, 652
BspANI	GGCC	5 cut(s)	234, 485, 559, 623, 675
BspCNI	CTCAG	2 cut(s)	469, 517
BspFNI	CGCG	1 cut(s)	201
BspLI	GGNNCC	2 cut(s)	301, 385
BspMI	ACCTGC	1 cut(s)	269
BspPI	GGATC	1 cut(s)	568
BspT104I	TTCGAA	1 cut(s)	542
BspT107I	GGYRCC	1 cut(s)	383
BsrFI	RCCGGY	3 cut(s)	481, 623, 675
BsrI	ACTGG	1 cut(s)	265
BssAI	RCCGGY	3 cut(s)	481, 623, 675
BssECI	CCNNGG	1 cut(s)	582
BssMI	GATC	5 cut(s)	196, 439, 573, 594, 599
BssNI	GRCGYC	1 cut(s)	384
Bst2UI	CCWGG	1 cut(s)	583
Bst4CI	ACNGT	3 cut(s)	136, 144, 515
BstACI	GRCGYC	1 cut(s)	384
BstBAI	YACGTR	1 cut(s)	292
BstBI	TTCGAA	1 cut(s)	542
BstC8I	GCNNGC	1 cut(s)	497
BstDEI	CTNAG	2 cut(s)	456, 504
BstF5I	GGATG	4 cut(s)	217, 235, 280, 643
BstFNI	CGCG	1 cut(s)	201
BstH2I	RGCGCY	1 cut(s)	387
BstHHI	GCGC	1 cut(s)	386
BstKTI	GATC	5 cut(s)	199, 442, 576, 597, 602
BstMAI	GTCTC	1 cut(s)	197
BstMBI	GATC	5 cut(s)	196, 439, 573, 594, 599
BstMCI	CGRYCG	1 cut(s)	676
BstNI	CCWGG	1 cut(s)	583
BstNSI	RCATGY	1 cut(s)	46
BstSCI	CCNGG	1 cut(s)	581
BstSNI	TACGTA	1 cut(s)	292
BstUI	CGCG	1 cut(s)	201
BstV1I	GCAGC	2 cut(s)	511, 533
BstV2I	GAAGAC	1 cut(s)	617
BstX2I	RGATCY	1 cut(s)	599
BstYI	RGATCY	1 cut(s)	599
BstZI	CGGCCG	1 cut(s)	673
BsuI	GTATCC	1 cut(s)	404
BsuRI	GGCC	5 cut(s)	234, 485, 559, 623, 675
BtsCI	GGATG	4 cut(s)	217, 235, 280, 643
BtsI	GCAGTG	1 cut(s)	418
BtsIMutI	CAGTG	4 cut(s)	149, 258, 303, 418
BtuMI	TCGCGA	1 cut(s)	201
BveI	ACCTGC	1 cut(s)	269
Cac8I	GCNNGC	1 cut(s)	497
CfoI	GCGC	1 cut(s)	386
Cfr10I	RCCGGY	3 cut(s)	481, 623, 675
Cfr13I	GGNCC	3 cut(s)	233, 281, 299
CviAII	CATG	2 cut(s)	43, 80
DdeI	CTNAG	2 cut(s)	456, 504
DinI	GGCGCC	1 cut(s)	385
DpnI	GATC	5 cut(s)	198, 441, 575, 596, 601
DpnII	GATC	5 cut(s)	196, 439, 573, 594, 599
DraIII	CACNNNGTG	1 cut(s)	146
EaeI	YGGCCR	2 cut(s)	621, 673
EagI	CGGCCG	1 cut(s)	673
Ecl136II	GAGCTC	1 cut(s)	534
EclXI	CGGCCG	1 cut(s)	673
Eco105I	TACGTA	1 cut(s)	292
Eco24I	GRGCYC	1 cut(s)	536
Eco47I	GGWCC	2 cut(s)	281, 299
Eco52I	CGGCCG	1 cut(s)	673
Eco53kI	GAGCTC	1 cut(s)	534
Eco57I	CTGAAG	1 cut(s)	360
EcoICRI	GAGCTC	1 cut(s)	534
EcoO109I	RGGNCCY	1 cut(s)	281
EcoRII	CCWGG	1 cut(s)	581
EcoT22I	ATGCAT	1 cut(s)	225
EcoT38I	GRGCYC	1 cut(s)	536
EgeI	GGCGCC	1 cut(s)	385
EheI	GGCGCC	1 cut(s)	385
FaeI	CATG	2 cut(s)	46, 83
FaiI	YATR	9 cut(s)	44, 67, 81, 188, 221, 289, 314, 438, 473
FaqI	GGGAC	1 cut(s)	285
FatI	CATG	2 cut(s)	42, 79
FbaI	TGATCA	1 cut(s)	594
Fnu4HI	GCNGC	2 cut(s)	500, 522
FokI	GGATG	4 cut(s)	224, 242, 287, 650
FriOI	GRGCYC	1 cut(s)	536
Fsp4HI	GCNGC	2 cut(s)	500, 522
FspBI	CTAG	2 cut(s)	371, 603
GlaI	GCGC	1 cut(s)	385
GluI	GCNGC	2 cut(s)	500, 522
HaeII	RGCGCY	1 cut(s)	387
HaeIII	GGCC	5 cut(s)	234, 485, 559, 623, 675
HapII	CCGG	3 cut(s)	482, 624, 676
HhaI	GCGC	1 cut(s)	386
Hin1I	GRCGYC	1 cut(s)	384
Hin1II	CATG	2 cut(s)	46, 83
Hin6I	GCGC	1 cut(s)	384
HinP1I	GCGC	1 cut(s)	384
HincII	GTYRAC	1 cut(s)	132
HindII	GTYRAC	1 cut(s)	132
HinfI	GANTC	1 cut(s)	539
HpaII	CCGG	3 cut(s)	482, 624, 676
Hpy166II	GTNNAC	1 cut(s)	132
Hpy188I	TCNGA	5 cut(s)	121, 229, 274, 538, 599
Hpy188III	TCNNGA	1 cut(s)	200
Hpy8I	GTNNAC	1 cut(s)	132
Hpy99I	CGWCG	1 cut(s)	619
HpyAV	CCTTC	4 cut(s)	161, 294, 323, 401
HpyCH4III	ACNGT	3 cut(s)	136, 144, 515
HpyCH4IV	ACGT	3 cut(s)	110, 291, 617
HpyCH4V	TGCA	6 cut(s)	140, 223, 258, 278, 423, 429
HpyF3I	CTNAG	2 cut(s)	456, 504
HpySE526I	ACGT	3 cut(s)	110, 291, 617
Hsp92I	GRCGYC	1 cut(s)	384
Hsp92II	CATG	2 cut(s)	46, 83
HspAI	GCGC	1 cut(s)	384
KasI	GGCGCC	1 cut(s)	383
Ksp22I	TGATCA	1 cut(s)	594
Kzo9I	GATC	5 cut(s)	196, 439, 573, 594, 599
LmnI	GCTCC	5 cut(s)	83, 332, 518, 531, 539
Lsp1109I	GCAGC	2 cut(s)	511, 533
LweI	GCATC	1 cut(s)	265
MaeI	CTAG	2 cut(s)	371, 603
MaeII	ACGT	3 cut(s)	110, 291, 617
MaeIII	GTNAC	2 cut(s)	159, 346
MalI	GATC	5 cut(s)	198, 441, 575, 596, 601
MboI	GATC	5 cut(s)	196, 439, 573, 594, 599
MboII	GAAGA	4 cut(s)	353, 580, 622, 674
MflI	RGATCY	1 cut(s)	599
MhlI	GDGCHC	2 cut(s)	88, 536
MluCI	AATT	3 cut(s)	89, 177, 392
Mly113I	GGCGCC	1 cut(s)	384
MmeI	TCCRAC	1 cut(s)	144
MnlI	CCTC	5 cut(s)	246, 310, 465, 513, 549
Mph1103I	ATGCAT	1 cut(s)	225
MseI	TTAA	2 cut(s)	27, 150
MslI	CAYNNNNRTG	1 cut(s)	228
MspA1I	CMGCKG	1 cut(s)	524
MspI	CCGG	3 cut(s)	482, 624, 676
MspR9I	CCNGG	1 cut(s)	583
Mva1269I	GAATGC	1 cut(s)	223
MvaI	CCWGG	1 cut(s)	583
MvnI	CGCG	1 cut(s)	201
NarI	GGCGCC	1 cut(s)	384
NdeII	GATC	5 cut(s)	196, 439, 573, 594, 599
NlaIII	CATG	2 cut(s)	46, 83
NlaIV	GGNNCC	2 cut(s)	301, 385
NmeAIII	GCCGAG	1 cut(s)	585
NmuCI	GTSAC	1 cut(s)	346
NruI	TCGCGA	1 cut(s)	201
NsiI	ATGCAT	1 cut(s)	225
NspI	RCATGY	1 cut(s)	46
NspV	TTCGAA	1 cut(s)	542
PciI	ACATGT	1 cut(s)	42
PctI	GAATGC	1 cut(s)	223
PfeI	GAWTC	1 cut(s)	539
PkrI	GCNGC	2 cut(s)	501, 523
PluTI	GGCGCC	1 cut(s)	387
Ppu21I	YACGTR	1 cut(s)	292
PpuMI	RGGWCCY	1 cut(s)	281
PscI	ACATGT	1 cut(s)	42
Psp124BI	GAGCTC	1 cut(s)	536
Psp1406I	AACGTT	1 cut(s)	110
Psp5II	RGGWCCY	1 cut(s)	281
Psp6I	CCWGG	1 cut(s)	581
PspGI	CCWGG	1 cut(s)	581
PspN4I	GGNNCC	2 cut(s)	301, 385
PspPI	GGNCC	3 cut(s)	233, 281, 299
PspPPI	RGGWCCY	1 cut(s)	281
PsuI	RGATCY	1 cut(s)	599
PvuII	CAGCTG	1 cut(s)	524
RruI	TCGCGA	1 cut(s)	201
RseI	CAYNNNNRTG	1 cut(s)	228
SacI	GAGCTC	1 cut(s)	536
SaqAI	TTAA	2 cut(s)	27, 150
SatI	GCNGC	2 cut(s)	500, 522
Sau3AI	GATC	5 cut(s)	196, 439, 573, 594, 599
Sau96I	GGNCC	3 cut(s)	233, 281, 299
ScrFI	CCNGG	1 cut(s)	583
SduI	GDGCHC	2 cut(s)	88, 536
SfaNI	GCATC	1 cut(s)	265
SfoI	GGCGCC	1 cut(s)	385
SfuI	TTCGAA	1 cut(s)	542
SinI	GGWCC	2 cut(s)	281, 299
SmiMI	CAYNNNNRTG	1 cut(s)	228
SnaBI	TACGTA	1 cut(s)	292
Sse9I	AATT	3 cut(s)	89, 177, 392
SsiI	CCGC	3 cut(s)	264, 468, 652
SspDI	GGCGCC	1 cut(s)	383
SspI	AATATT	1 cut(s)	192
SspMI	CTAG	2 cut(s)	371, 603
SstI	GAGCTC	1 cut(s)	536
StyD4I	CCNGG	1 cut(s)	581
TaaI	ACNGT	3 cut(s)	136, 144, 515
TaiI	ACGT	3 cut(s)	113, 294, 620
TaqI	TCGA	3 cut(s)	542, 554, 646
TasI	AATT	3 cut(s)	89, 177, 392
TfiI	GAWTC	1 cut(s)	539
Tru1I	TTAA	2 cut(s)	27, 150
Tru9I	TTAA	2 cut(s)	27, 150
TscAI	CASTG	4 cut(s)	149, 265, 310, 425
TseFI	GTSAC	1 cut(s)	346
TseI	GCWGC	2 cut(s)	499, 521
Tsp45I	GTSAC	1 cut(s)	346
TspDTI	ATGAA	1 cut(s)	276
TspRI	CASTG	4 cut(s)	149, 265, 310, 425
VpaK11BI	GGWCC	2 cut(s)	281, 299
XceI	RCATGY	1 cut(s)	46
XspI	CTAG	2 cut(s)	371, 603
Zsp2I	ATGCAT	1 cut(s)	225

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.