pycom03g08710

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr3
OG0004205
Physical Location & Seq
Reverse (-)
7052659 .. 7052907
249 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom03g08710.1

Sequence Viewer

Length: 249 bp
ATGTCGAATTTGAAAAAACTGGAAATCCCAGGTTCCAAGTCCAAACACAGCCGAAATCGAAGGCTCCCTCCCAGGAGGGGACAGATCAAGATCAGGATATTTAAGGAATTGATCAAGTTCTTGGCTCCCATGGCGGGCGGGGGAGCTCGAAAGCCGAGGGAAAATGGAGGGTTCCTGAGCTCCAGCTCCCAAACCCCAGCTGAAACCCCAAGTGGGTACTGCTGCAATGCTCAGTCTGATCGCTCCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

83

Amino Acids

9.03

Weight (kDa)

11.01

Isoelectric Point (pI)

56.39

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 134, 138
AcsI RAATTY 1 cut(s) 7
AfaI GTAC 1 cut(s) 218
AfiI CCNNNNNNNGG 3 cut(s) 77, 134, 213
AgsI TTSAA 1 cut(s) 13
AjnI CCWGG 2 cut(s) 28, 71
AluBI AGCT 4 cut(s) 146, 180, 186, 200
AluI AGCT 4 cut(s) 146, 180, 186, 200
Alw21I GWGCWC 2 cut(s) 148, 182
ApeKI GCWGC 1 cut(s) 222
ApoI RAATTY 1 cut(s) 7
BanII GRGCYC 2 cut(s) 148, 182
Bbv12I GWGCWC 2 cut(s) 148, 182
BbvI GCAGC 1 cut(s) 209
BciT130I CCWGG 2 cut(s) 30, 73
BclI TGATCA 1 cut(s) 111
BisI GCNGC 1 cut(s) 223
BlsI GCNGC 1 cut(s) 224
Bme1390I CCNGG 2 cut(s) 30, 73
BmiI GGNNCC 4 cut(s) 34, 65, 126, 173
BmrFI CCNGG 2 cut(s) 30, 73
BpmI CTGGAG 1 cut(s) 166
Bpu10I CCTNAGC 1 cut(s) 176
BsaBI GATNNNNATC 1 cut(s) 89
BsaJI CCNNGG 4 cut(s) 28, 71, 129, 155
Bsc4I CCNNNNNNNGG 3 cut(s) 77, 134, 213
Bse1I ACTGG 1 cut(s) 24
Bse3DI GCAATG 1 cut(s) 232
Bse8I GATNNNNATC 1 cut(s) 89
BseBI CCWGG 2 cut(s) 30, 73
BseDI CCNNGG 4 cut(s) 28, 71, 129, 155
BseJI GATNNNNATC 1 cut(s) 89
BseLI CCNNNNNNNGG 3 cut(s) 77, 134, 213
BseMI GCAATG 1 cut(s) 232
BseMII CTCAG 2 cut(s) 167, 245
BseNI ACTGG 1 cut(s) 24
BseXI GCAGC 1 cut(s) 209
BseYI CCCAGC 1 cut(s) 196
BsiHKAI GWGCWC 2 cut(s) 148, 182
BslFI GGGAC 1 cut(s) 93
BslI CCNNNNNNNGG 3 cut(s) 77, 134, 213
BsmFI GGGAC 1 cut(s) 93
Bsp1286I GDGCHC 2 cut(s) 148, 182
Bsp143I GATC 4 cut(s) 84, 90, 111, 238
Bsp19I CCATGG 1 cut(s) 129
BspACI CCGC 2 cut(s) 134, 138
BspCNI CTCAG 2 cut(s) 168, 244
BspLI GGNNCC 4 cut(s) 34, 65, 126, 173
BsrDI GCAATG 1 cut(s) 232
BsrI ACTGG 1 cut(s) 24
BssECI CCNNGG 4 cut(s) 28, 71, 129, 155
BssMI GATC 4 cut(s) 84, 90, 111, 238
BssT1I CCWWGG 1 cut(s) 129
Bst2UI CCWGG 2 cut(s) 30, 73
BstC8I GCNNGC 1 cut(s) 136
BstDEI CTNAG 2 cut(s) 176, 231
BstDSI CCRYGG 1 cut(s) 129
BstKTI GATC 4 cut(s) 87, 93, 114, 241
BstMBI GATC 4 cut(s) 84, 90, 111, 238
BstMWI GCNNNNNNNGC 1 cut(s) 131
BstNI CCWGG 2 cut(s) 30, 73
BstSCI CCNGG 2 cut(s) 28, 71
BstV1I GCAGC 1 cut(s) 209
BtgI CCRYGG 1 cut(s) 129
Cac8I GCNNGC 1 cut(s) 136
Csp6I GTAC 1 cut(s) 217
CviAII CATG 1 cut(s) 130
CviJI RGCY 8 cut(s) 51, 64, 125, 146, 154, 180, 186, 200
CviKI_1 RGCY 8 cut(s) 51, 64, 125, 146, 154, 180, 186, 200
CviQI GTAC 1 cut(s) 217
DdeI CTNAG 2 cut(s) 176, 231
DpnI GATC 4 cut(s) 86, 92, 113, 240
DpnII GATC 4 cut(s) 84, 90, 111, 238
Ecl136II GAGCTC 2 cut(s) 146, 180
Eco130I CCWWGG 1 cut(s) 129
Eco24I GRGCYC 2 cut(s) 148, 182
Eco53kI GAGCTC 2 cut(s) 146, 180
EcoICRI GAGCTC 2 cut(s) 146, 180
EcoRII CCWGG 2 cut(s) 28, 71
EcoT14I CCWWGG 1 cut(s) 129
EcoT38I GRGCYC 2 cut(s) 148, 182
ErhI CCWWGG 1 cut(s) 129
FaeI CATG 1 cut(s) 133
FaiI YATR 1 cut(s) 131
FaqI GGGAC 1 cut(s) 93
FatI CATG 1 cut(s) 129
FauI CCCGC 2 cut(s) 127, 131
FbaI TGATCA 1 cut(s) 111
Fnu4HI GCNGC 1 cut(s) 223
FriOI GRGCYC 2 cut(s) 148, 182
Fsp4HI GCNGC 1 cut(s) 223
GluI GCNGC 1 cut(s) 223
GsaI CCCAGC 1 cut(s) 200
GsuI CTGGAG 1 cut(s) 166
Hin1II CATG 1 cut(s) 133
Hpy188I TCNGA 1 cut(s) 238
Hpy188III TCNNGA 4 cut(s) 88, 94, 175, 246
HpyAV CCTTC 1 cut(s) 54
HpyCH4V TGCA 1 cut(s) 225
HpyF10VI GCNNNNNNNGC 1 cut(s) 131
HpyF3I CTNAG 2 cut(s) 176, 231
Hsp92II CATG 1 cut(s) 133
Ksp22I TGATCA 1 cut(s) 111
Kzo9I GATC 4 cut(s) 84, 90, 111, 238
LmnI GCTCC 6 cut(s) 69, 130, 143, 185, 191, 248
LpnPI CCDG 9 cut(s) 5, 15, 42, 58, 79, 85, 188, 196, 210
Lsp1109I GCAGC 1 cut(s) 209
MalI GATC 4 cut(s) 86, 92, 113, 240
MboI GATC 4 cut(s) 84, 90, 111, 238
MhlI GDGCHC 2 cut(s) 148, 182
MluCI AATT 2 cut(s) 7, 107
MnlI CCTC 4 cut(s) 69, 78, 150, 161
MseI TTAA 1 cut(s) 102
MspA1I CMGCKG 1 cut(s) 200
MspR9I CCNGG 2 cut(s) 30, 73
MvaI CCWGG 2 cut(s) 30, 73
MwoI GCNNNNNNNGC 1 cut(s) 131
NcoI CCATGG 1 cut(s) 129
NdeII GATC 4 cut(s) 84, 90, 111, 238
NlaIII CATG 1 cut(s) 133
NlaIV GGNNCC 4 cut(s) 34, 65, 126, 173
NmeAIII GCCGAG 1 cut(s) 180
PkrI GCNGC 1 cut(s) 224
Psp124BI GAGCTC 2 cut(s) 148, 182
Psp6I CCWGG 2 cut(s) 28, 71
PspFI CCCAGC 1 cut(s) 196
PspGI CCWGG 2 cut(s) 28, 71
PspN4I GGNNCC 4 cut(s) 34, 65, 126, 173
PvuII CAGCTG 1 cut(s) 200
RsaI GTAC 1 cut(s) 218
RsaNI GTAC 1 cut(s) 217
SacI GAGCTC 2 cut(s) 148, 182
SaqAI TTAA 1 cut(s) 102
SatI GCNGC 1 cut(s) 223
Sau3AI GATC 4 cut(s) 84, 90, 111, 238
ScrFI CCNGG 2 cut(s) 30, 73
SduI GDGCHC 2 cut(s) 148, 182
SetI ASST 5 cut(s) 34, 148, 182, 188, 202
Sse9I AATT 2 cut(s) 7, 107
SsiI CCGC 2 cut(s) 134, 138
SstI GAGCTC 2 cut(s) 148, 182
StyD4I CCNGG 2 cut(s) 28, 71
StyI CCWWGG 1 cut(s) 129
TaqI TCGA 3 cut(s) 5, 58, 148
TasI AATT 2 cut(s) 7, 107
Tru1I TTAA 1 cut(s) 102
Tru9I TTAA 1 cut(s) 102
TseI GCWGC 1 cut(s) 222
XapI RAATTY 1 cut(s) 7
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.