Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr7

Orthogroup ID

OG0004205

Physical Location & Seq

Genomic Coordinates Forward (+)

67664863 .. 67665542

Gene Structure 680 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000035494

Sequence Viewer

CDS Protein Promoter (2k)

Length: 402 bp

ATGGAAAGCCCAGAATCCAACCCCAACCGCTGCCCAAAACGCCTCCCTCCTCCCAGAGGGCAGATCAAGATCAGGATCTTCAAATCAGTGGCTTCAGCAGTGGGTGGGTTCATTCACAAGCCGAAAGAATATGGATCCCAAATTCCAGCTGAACCGCGGAGCGGGAACAATTTCTGTGATTTTCTTGCTGTCACTTTTCAACTCCGGCAAGTTTCTGTGCCCCTGAACCAAGTCCAAAGTCATTTTTTACTCTCTGAAGCCGCCGATCGGCGCCACCTTGATTCTCAGGTTCAGATCTTTGCCGACGTTAAAGATCTGAGCAAGCTGGGCGGTAGATTCTATATGCAGAGTTCATCCTTTTCTAAATATAGCAAAAACAGAATTGATTTTCCGGACTGGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

134

Amino Acids

15.11

Weight (kDa)

9.74

Isoelectric Point (pI)

54.54

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004205)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G45730
fragaria_vesca	FvH4_3g34010 FvH4_3g34020 FvH4_3g34080
prunus_persica	Prupe.6G090700_v2.0.a1 Prupe.6G090800_v2.0.a1
pyrus_communis	pycom01g14210 pycom03g08710 pycom03g08740 pycom11g10190 pycom11g10200 pycom11g10210
rosa_chinensis	RchiOBHm_Chr5g0061611 RchiOBHm_Chr5g0061631 RchiOBHm_Chr5g0061691 RchiOBHm_Chr5g0061701 RchiOBHm_Chr5g0061721 RchiOBHm_Chr5g0061731 RchiOBHm_Chr5g0061741
rosa_laevigata	RLG00000035494 RLG00000035498
rosa_roxburghii	Rroxscaffold_1G00019040 Rroxscaffold_1G00019060 Rroxscaffold_1G00019100
rosa_rugosa	Rorug05G0342000.1 Rorug05G0342100
rosa_samantha	Rh1AG005100 Rh5AG404000 Rh5BG416700 Rh5CG441200 Rh5DG430800 Rh5DG431000 Rh7CG345100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	270
AccBSI	CCGCTC	1 cut(s)	162
AccII	CGCG	1 cut(s)	157
AccIII	TCCGGA	1 cut(s)	391
AciI	CCGC	6 cut(s)	28, 155, 157, 162, 261, 330
AclWI	GGATC	3 cut(s)	83, 129, 142
AcsI	RAATTY	1 cut(s)	141
AcuI	CTGAAG	2 cut(s)	78, 276
AcyI	GRCGYC	1 cut(s)	271
AfiI	CCNNNNNNNGG	3 cut(s)	56, 161, 267
AgsI	TTSAA	2 cut(s)	82, 200
AluBI	AGCT	2 cut(s)	149, 325
AluI	AGCT	2 cut(s)	149, 325
AlwI	GGATC	3 cut(s)	83, 129, 142
Aor13HI	TCCGGA	1 cut(s)	391
ApeKI	GCWGC	1 cut(s)	30
ApoI	RAATTY	1 cut(s)	141
Asp700I	GAANNNNTTC	1 cut(s)	170
AspLEI	GCGC	1 cut(s)	273
BaeGI	GKGCMC	1 cut(s)	222
BamHI	GGATCC	1 cut(s)	134
BanI	GGYRCC	1 cut(s)	270
BbvI	GCAGC	1 cut(s)	17
BfoI	RGCGCY	1 cut(s)	274
BglII	AGATCT	2 cut(s)	294, 313
BisI	GCNGC	2 cut(s)	31, 261
BlsI	GCNGC	2 cut(s)	32, 262
BmiI	GGNNCC	2 cut(s)	136, 272
BsaBI	GATNNNNATC	2 cut(s)	68, 74
BsaHI	GRCGYC	1 cut(s)	271
BsaJI	CCNNGG	1 cut(s)	155
BsaWI	WCCGGW	1 cut(s)	391
Bsc4I	CCNNNNNNNGG	3 cut(s)	56, 161, 267
Bse1I	ACTGG	1 cut(s)	401
Bse8I	GATNNNNATC	2 cut(s)	68, 74
BseAI	TCCGGA	1 cut(s)	391
BseDI	CCNNGG	1 cut(s)	155
BseGI	GGATG	1 cut(s)	353
BseJI	GATNNNNATC	2 cut(s)	68, 74
BseLI	CCNNNNNNNGG	3 cut(s)	56, 161, 267
BseMII	CTCAG	2 cut(s)	299, 308
BseNI	ACTGG	1 cut(s)	401
BseRI	GAGGAG	1 cut(s)	39
BseSI	GKGCMC	1 cut(s)	222
BseXI	GCAGC	1 cut(s)	17
BseYI	CCCAGC	1 cut(s)	325
Bsh1236I	CGCG	1 cut(s)	157
Bsh1285I	CGRYCG	1 cut(s)	268
BshNI	GGYRCC	1 cut(s)	270
BsiEI	CGRYCG	1 cut(s)	268
BsiSI	CCGG	2 cut(s)	205, 392
BslI	CCNNNNNNNGG	3 cut(s)	56, 161, 267
Bsp1286I	GDGCHC	1 cut(s)	222
Bsp13I	TCCGGA	1 cut(s)	391
Bsp143I	GATC	7 cut(s)	63, 69, 75, 134, 265, 294, 313
BspACI	CCGC	6 cut(s)	28, 155, 157, 162, 261, 330
BspCNI	CTCAG	2 cut(s)	298, 309
BspEI	TCCGGA	1 cut(s)	391
BspFNI	CGCG	1 cut(s)	157
BspLI	GGNNCC	2 cut(s)	136, 272
BspPI	GGATC	3 cut(s)	83, 129, 142
BspT107I	GGYRCC	1 cut(s)	270
BsrBI	CCGCTC	1 cut(s)	162
BsrI	ACTGG	1 cut(s)	401
BssECI	CCNNGG	1 cut(s)	155
BssMI	GATC	7 cut(s)	63, 69, 75, 134, 265, 294, 313
BssNI	GRCGYC	1 cut(s)	271
BstACI	GRCGYC	1 cut(s)	271
BstC8I	GCNNGC	1 cut(s)	323
BstDEI	CTNAG	2 cut(s)	285, 317
BstDSI	CCRYGG	1 cut(s)	155
BstENI	CCTNNNNNAGG	1 cut(s)	54
BstF5I	GGATG	1 cut(s)	353
BstFNI	CGCG	1 cut(s)	157
BstH2I	RGCGCY	1 cut(s)	274
BstHHI	GCGC	1 cut(s)	273
BstKTI	GATC	7 cut(s)	66, 72, 78, 137, 268, 297, 316
BstMBI	GATC	7 cut(s)	63, 69, 75, 134, 265, 294, 313
BstMCI	CGRYCG	1 cut(s)	268
BstMWI	GCNNNNNNNGC	2 cut(s)	39, 327
BstSLI	GKGCMC	1 cut(s)	222
BstUI	CGCG	1 cut(s)	157
BstV1I	GCAGC	1 cut(s)	17
BstX2I	RGATCY	4 cut(s)	75, 134, 294, 313
BstYI	RGATCY	4 cut(s)	75, 134, 294, 313
BtgI	CCRYGG	1 cut(s)	155
BtsCI	GGATG	1 cut(s)	353
BtsI	GCAGTG	1 cut(s)	105
BtsIMutI	CAGTG	2 cut(s)	93, 105
Cac8I	GCNNGC	1 cut(s)	323
CfoI	GCGC	1 cut(s)	273
Cfr42I	CCGCGG	1 cut(s)	158
CviJI	RGCY	6 cut(s)	9, 92, 121, 149, 260, 325
CviKI_1	RGCY	6 cut(s)	9, 92, 121, 149, 260, 325
DdeI	CTNAG	2 cut(s)	285, 317
DinI	GGCGCC	1 cut(s)	272
DpnI	GATC	7 cut(s)	65, 71, 77, 136, 267, 296, 315
DpnII	GATC	7 cut(s)	63, 69, 75, 134, 265, 294, 313
Eco57I	CTGAAG	2 cut(s)	78, 276
EcoNI	CCTNNNNNAGG	1 cut(s)	54
EgeI	GGCGCC	1 cut(s)	272
EheI	GGCGCC	1 cut(s)	272
FaiI	YATR	4 cut(s)	132, 342, 344, 369
FauI	CCCGC	1 cut(s)	155
Fnu4HI	GCNGC	2 cut(s)	31, 261
FokI	GGATG	1 cut(s)	340
Fsp4HI	GCNGC	2 cut(s)	31, 261
GlaI	GCGC	1 cut(s)	272
GluI	GCNGC	2 cut(s)	31, 261
GsaI	CCCAGC	1 cut(s)	329
HaeII	RGCGCY	1 cut(s)	274
HapII	CCGG	2 cut(s)	205, 392
HhaI	GCGC	1 cut(s)	273
Hin1I	GRCGYC	1 cut(s)	271
Hin6I	GCGC	1 cut(s)	271
HinP1I	GCGC	1 cut(s)	271
HinfI	GANTC	3 cut(s)	14, 281, 336
HpaII	CCGG	2 cut(s)	205, 392
Hpy188I	TCNGA	3 cut(s)	256, 294, 318
Hpy188III	TCNNGA	3 cut(s)	67, 73, 392
Hpy99I	CGWCG	1 cut(s)	308
HpyCH4IV	ACGT	1 cut(s)	306
HpyCH4V	TGCA	1 cut(s)	346
HpyF10VI	GCNNNNNNNGC	2 cut(s)	39, 327
HpyF3I	CTNAG	2 cut(s)	285, 317
HpySE526I	ACGT	1 cut(s)	306
Hsp92I	GRCGYC	1 cut(s)	271
HspAI	GCGC	1 cut(s)	271
KasI	GGCGCC	1 cut(s)	270
Kpn2I	TCCGGA	1 cut(s)	391
KspI	CCGCGG	1 cut(s)	158
Kzo9I	GATC	7 cut(s)	63, 69, 75, 134, 265, 294, 313
LmnI	GCTCC	1 cut(s)	159
LpnPI	CCDG	9 cut(s)	24, 58, 67, 159, 218, 236, 272, 311, 382
Lsp1109I	GCAGC	1 cut(s)	17
MaeII	ACGT	1 cut(s)	306
MaeIII	GTNAC	1 cut(s)	190
MalI	GATC	7 cut(s)	65, 71, 77, 136, 267, 296, 315
MbiI	CCGCTC	1 cut(s)	162
MboI	GATC	7 cut(s)	63, 69, 75, 134, 265, 294, 313
MboII	GAAGA	1 cut(s)	70
MflI	RGATCY	4 cut(s)	75, 134, 294, 313
MhlI	GDGCHC	1 cut(s)	222
MluCI	AATT	3 cut(s)	141, 169, 381
Mly113I	GGCGCC	1 cut(s)	271
MmeI	TCCRAC	1 cut(s)	42
MnlI	CCTC	4 cut(s)	50, 53, 57, 60
MroI	TCCGGA	1 cut(s)	391
MroXI	GAANNNNTTC	1 cut(s)	170
MseI	TTAA	1 cut(s)	309
MspA1I	CMGCKG	3 cut(s)	30, 149, 157
MspI	CCGG	2 cut(s)	205, 392
MvnI	CGCG	1 cut(s)	157
MwoI	GCNNNNNNNGC	2 cut(s)	39, 327
NarI	GGCGCC	1 cut(s)	271
NdeII	GATC	7 cut(s)	63, 69, 75, 134, 265, 294, 313
NlaIV	GGNNCC	2 cut(s)	136, 272
NmuCI	GTSAC	1 cut(s)	190
PdmI	GAANNNNTTC	1 cut(s)	170
PfeI	GAWTC	3 cut(s)	14, 281, 336
PkrI	GCNGC	2 cut(s)	32, 262
Ple19I	CGATCG	1 cut(s)	268
PluTI	GGCGCC	1 cut(s)	274
PspFI	CCCAGC	1 cut(s)	325
PspN4I	GGNNCC	2 cut(s)	136, 272
PsuI	RGATCY	4 cut(s)	75, 134, 294, 313
PvuI	CGATCG	1 cut(s)	268
PvuII	CAGCTG	1 cut(s)	149
SacII	CCGCGG	1 cut(s)	158
SaqAI	TTAA	1 cut(s)	309
SatI	GCNGC	2 cut(s)	31, 261
Sau3AI	GATC	7 cut(s)	63, 69, 75, 134, 265, 294, 313
SduI	GDGCHC	1 cut(s)	222
SetI	ASST	5 cut(s)	151, 279, 291, 309, 327
SfoI	GGCGCC	1 cut(s)	272
Sfr303I	CCGCGG	1 cut(s)	158
SgrBI	CCGCGG	1 cut(s)	158
Sse9I	AATT	3 cut(s)	141, 169, 381
SsiI	CCGC	6 cut(s)	28, 155, 157, 162, 261, 330
SspDI	GGCGCC	1 cut(s)	270
TaiI	ACGT	1 cut(s)	309
TasI	AATT	3 cut(s)	141, 169, 381
TauI	GCSGC	1 cut(s)	263
TfiI	GAWTC	3 cut(s)	14, 281, 336
Tru1I	TTAA	1 cut(s)	309
Tru9I	TTAA	1 cut(s)	309
TscAI	CASTG	2 cut(s)	93, 105
TseFI	GTSAC	1 cut(s)	190
TseI	GCWGC	1 cut(s)	30
Tsp45I	GTSAC	1 cut(s)	190
TspDTI	ATGAA	2 cut(s)	100, 342
TspRI	CASTG	2 cut(s)	93, 105
XagI	CCTNNNNNAGG	1 cut(s)	54
XapI	RAATTY	1 cut(s)	141
XmnI	GAANNNNTTC	1 cut(s)	170

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.