Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb3

Orthogroup ID

OG0006627

Physical Location & Seq

Genomic Coordinates Forward (+)

32808627 .. 32811143

Gene Structure 2517 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_3g38420.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2271 bp

ATGTTGGGTAATAGAAGCACTTTAAAATATAAGAATGTGGTTAGCATCAACGTGACCGCAGAAGACATGGCAACTCTAGGCACCCCGGTCATCTCTCTCCCACGTCATCCCCCAACCGTCAATAACGACCTTCGCTTCCCAACCCAACTGCTTCTCCCACTCATAGACCAATGCACCACCCTCAACCACCTCAAGCAAGTCCATGCCCAGATGCTCAAAACGTCCCTATTCTTCGACCCTTATTCCGCTAGTAAGCTCATCACAGCTGCCGCCCTCTCCCCGTTTTCGAGCCTCGACTATGCACGCCAAGTGTTCGACGAAATTCCTGAACCAAATCTGTTCACTTGGAACGCCCTCATTCGGGCTTACGCCTCCAGCCCCGACCCGGTTGAAAGCATCCGCATATTTCTGCAGATGCTCGACGAGTGTAATGAGTGCCCCAATAAGTTTACTTTCCCTTTTCTGCTCAAGGCGGCCTCGGAGCTCCGGGCTTCCAAGATTGGGAGAGGTTTTCATGGCATGGTGGTAAAAGCCGAGCTGGGTTCGGATGTGTACATTGTTAATTCGCTCATTCATTTTTATGGTTCTTGCGGGGAATTGGATTTGGCGCGGTTGGTGTTTTTGAAGAGTTATAAGAAGGATGTTGTTAGTTGGAATTCTGTTATCACGGCTTTCGCTCAGGGGAACTGTCCCGAGGTGGCGTTGGAGTTGTTTAAGGAAATGGAGGCGGAGAATATGAAGCCGAATGATGTGACATTAGTTAGTGTGTTGTCGGCTTGCGCAAAGATGGCGGATTTGGAGTTTGGGAGGTGGGTTTGTTCGCATGTTGAAAGGCATGGAGTTGAGGAGAACTTGACTTTGAATAATGCCATGCTGGATATGTATGCCAAATGCGGGAGTGTTGAAGATGCGGAGAGATTGTTTGGTAGGATGCCGGAGAAGGACGTTGTGTCGTGGACTACTATGCTTGATGGGTATGCTCGGATGGGGAATTATGATGAGGCTAGACGTGTTTTTGGTACCATGCCTAGTCAGGATATTGCTACGTGGAATGTGCTCATTTCGTCTTATGAACAGAACGGTAAGCCAAAAGAGGCGTTAGCTGTCTTCCATGAGTTGCAGAAGAACAAGGGTCCCAAGCCTGATGAGGTTACTCTAGTTAGTACGCTGGCAGCGTGTTCTCAATTGGGAGCTATTGATCTTGGCGGCTGGATACATGTTTATGTAAAGAAGCAGGGGATGAAGTTGAATTGTCACCTCACAACCTCACTTATTGACATGTATGCAAAATGTGGGAATCTAGAGAAGGCACTTGAGGTGTTTAATTCGGCAGAGACAAGAGACGTATTTGTCTGGAGTGCAATGATTGCTGCTTTAGCAATGCATGGTCAGGGGAGGGATGCATTGCACTTTTTCTCAAAAATGCTAGAAGCTAAGGTGAAGCCAAATGCTGTGACATTTACTAACATATTATGCGCTTGTAGCCACGCAGGATTGGTAAATGAGGGAAGAACGGTTTTTAATCAAATGGAGCAAGTTTATGGAGTTGTGCCTGGAATAAAGCACTATGCGTGCATGGTTGACATTCTTGGTCGTTCAGGTAACCTGGAAGAAGCTGCGGAACTGATAGAGAAAATGCCAATTTCTCCTACACCTTCTGTATGGGGAGCTCTGCTTGGGGCATGTACGCGCCATGAGAATGTTGCACTTGCTGAAAAGGCTTGTAGCCATTTGCTCGACTTGGATCCCAGAAATCATGGAGCCTATGTACTCTTATCAAATGTATATGCCAAAACAGGGAAATGGGAAGCAGTTTCTGGGTTAAGGAAGCTTATGCGAGATTCTGGAATAAAGAAAGAACCTGGTTGTAGCTCAATTGAAATTGATGGTAGTGTTCATGAATTTCTAGTTGGCGATAACACTCATCCTTTATCCAAAGATATCTACTCAAAGTTGGATGAGATAGCAGGGAGATTGAAGTCAATCGGATATGTGCCAAACAAGTCCCACCTACTGCAATTTGTTGAGGAAGAGGACATGAAGGAACATGCCTTAATCCTTCATAGTGAGAAACTGGCTATTGCTTTTGGGCTTATTAGCTCCAAACCATCTCAACCAATTCGCGTTGTGAAGAATCTTCGTGTTTGTGGAGACTGCCACTCAGTTGCTAAGCTTATATCTAAGCTTTATAATAGGGAGATATTTCTGAGAGATCGATATCGGTTTCATCATTTCAGAGAGGGGCATTGCTCATGTAATGATTACTGGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006139 GO:0006396 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009507 GO:0009536 GO:0009987 GO:0010467 GO:0016070 GO:0016787 GO:0016788 GO:0031425 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DYW_deaminase PPR

Protein Analysis

757

Amino Acids

84.27

Weight (kDa)

6.52

Isoelectric Point (pI)

41.64

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPR_2	PF13041	213 - 262	4.7e-11	PPR repeat family
PPR	PF01535	216 - 245	3.7e-06	PPR repeat
PPR_2	PF13041	314 - 345	8.9e-06	PPR repeat family
PPR	PF01535	317 - 345	7.6e-07	PPR repeat
PPR_2	PF13041	346 - 393	1.7e-08	PPR repeat family
PPR	PF01535	349 - 376	9.4e-07	PPR repeat
PPR_long	PF17177	425 - 547	1e-05	Pentacotripeptide-repeat region of PRORP
PPR_2	PF13041	447 - 495	4.2e-10	PPR repeat family
E_motif	PF20431	565 - 627	4.2e-22	E motif
Eplus_motif	PF20430	632 - 658	6.4e-08	E+ motif
DYW_deaminase	PF14432	663 - 756	5.8e-36	DYW family of nucleic acid deaminases

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006627)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G29760
fragaria_vesca	FvH4_3g38420
malus_domestica	MD03G1072100.v1.1 MD11G1076100.v1.1 MD11G1076300.v1.1 MD11G1076700.v1.1
prunus_persica	Prupe.6G058800_v2.0.a1
pyrus_communis	pycom03g05830 pycom12g05280
rosa_chinensis	RchiOBHm_Chr5g0069041 RchiOBHm_Chr5g0069081
rosa_laevigata	RLG00000017743 RLG00000036033
rosa_multiflora	Rmu_co8508453.1_g000001 Rmu_sc0000853.1_g000010 Rmu_sc0000853.1_g000011 Rmu_sc0000936.1_g000009
rosa_roxburghii	Rroxscaffold_1G00011680
rosa_rugosa	Rorug05G0395900
rosa_samantha	Rh5AG452500 Rh5AG482500 Rh5BG471800 Rh5BG503600 Rh5CG494200
rosa_wichuraiana	Rw0G006080 Rw5G042280

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	633, 2190
AasI	GACNNNNNNGTC	1 cut(s)	1349
Acc16I	TGCGCA	1 cut(s)	781
Acc65I	GGTACC	1 cut(s)	1019
AccB1I	GGYRCC	2 cut(s)	80, 1019
AccII	CGCG	3 cut(s)	610, 1690, 2124
AclWI	GGATC	2 cut(s)	1739, 1752
AcsI	RAATTY	3 cut(s)	321, 655, 1901
AfaI	GTAC	5 cut(s)	554, 1021, 1165, 1687, 1770
AfiI	CCNNNNNNNGG	6 cut(s)	360, 361, 385, 501, 894, 1797
AflIII	ACRYGT	3 cut(s)	1009, 1216, 1278
AgsI	TTSAA	8 cut(s)	392, 625, 830, 862, 905, 1249, 1880, 1978
AhdI	GACNNNNNGTC	1 cut(s)	949
AjiI	CACGTC	2 cut(s)	104, 1010
AjnI	CCWGG	3 cut(s)	1552, 1605, 1861
AjuI	GAANNNNNNNTTGG	2 cut(s)	1893, 1925
Alw21I	GWGCWC	3 cut(s)	486, 1059, 1672
Alw26I	GTCTC	3 cut(s)	1328, 1335, 2145
AlwI	GGATC	2 cut(s)	1739, 1752
AlwNI	CAGNNNCTG	1 cut(s)	1817
Ama87I	CYCGRG	1 cut(s)	692
AoxI	GGCC	1 cut(s)	474
ApeKI	GCWGC	4 cut(s)	266, 1172, 1370, 1616
ApoI	RAATTY	3 cut(s)	321, 655, 1901
Asp718I	GGTACC	1 cut(s)	1019
AspLEI	GCGC	4 cut(s)	610, 782, 1478, 1692
AspS9I	GGNCC	1 cut(s)	1133
AsuC2I	CCSGG	3 cut(s)	86, 386, 488
AsuHPI	GGTGA	2 cut(s)	1247, 1450
AvaI	CYCGRG	1 cut(s)	692
AvaII	GGWCC	1 cut(s)	1133
BaeGI	GKGCMC	1 cut(s)	440
BamHI	GGATCC	1 cut(s)	1744
BanI	GGYRCC	2 cut(s)	80, 1019
BanII	GRGCYC	2 cut(s)	486, 1672
BbsI	GAAGAC	2 cut(s)	69, 1099
Bbv12I	GWGCWC	3 cut(s)	486, 1059, 1672
BbvI	GCAGC	4 cut(s)	253, 1184, 1357, 1603
BccI	CCATC	5 cut(s)	781, 965, 979, 1880, 2116
BceAI	ACGGC	1 cut(s)	684
BciT130I	CCWGG	3 cut(s)	1554, 1607, 1863
BciVI	GTATCC	1 cut(s)	1206
BcnI	CCSGG	3 cut(s)	86, 386, 488
BcoDI	GTCTC	3 cut(s)	1328, 1335, 2145
BfaI	CTAG	8 cut(s)	77, 249, 1005, 1029, 1157, 1301, 1427, 1907
BfmI	CTRYAG	1 cut(s)	410
BfuI	GTATCC	1 cut(s)	1206
BisI	GCNGC	7 cut(s)	267, 270, 474, 1173, 1207, 1371, 1617
BlpI	GCTNAGC	1 cut(s)	2169
BlsI	GCNGC	7 cut(s)	268, 271, 475, 1174, 1208, 1372, 1618
Bme1390I	CCNGG	6 cut(s)	86, 386, 488, 1554, 1607, 1863
Bme18I	GGWCC	1 cut(s)	1133
BmeRI	GACNNNNNGTC	1 cut(s)	949
BmeT110I	CYCGRG	1 cut(s)	692
BmgBI	CACGTC	2 cut(s)	104, 1010
BmgT120I	GGNCC	1 cut(s)	1133
BmiI	GGNNCC	6 cut(s)	82, 1021, 1134, 1135, 1746, 1762
BmrFI	CCNGG	6 cut(s)	86, 386, 488, 1554, 1607, 1863
BmsI	GCATC	7 cut(s)	54, 201, 405, 405, 898, 921, 1390
BpiI	GAAGAC	2 cut(s)	69, 1099
BpmI	CTGGAG	2 cut(s)	358, 1375
Bpu10I	CCTNAGC	2 cut(s)	678, 1434
Bpu1102I	GCTNAGC	1 cut(s)	2169
BpuEI	CTTGAG	3 cut(s)	176, 452, 1334
BpuMI	CCSGG	3 cut(s)	86, 386, 488
Bsa29I	ATCGAT	1 cut(s)	2215
BsaAI	YACGTR	1 cut(s)	1047
BsaBI	GATNNNNATC	1 cut(s)	2217
BsaJI	CCNNGG	3 cut(s)	84, 477, 693
BsaXI	ACNNNNNCTCC	6 cut(s)	138, 168, 905, 935, 1752, 1782
Bsc4I	CCNNNNNNNGG	6 cut(s)	360, 361, 385, 501, 894, 1797
Bse1I	ACTGG	2 cut(s)	2079, 2270
Bse3DI	GCAATG	4 cut(s)	1368, 1386, 1403, 2245
Bse8I	GATNNNNATC	1 cut(s)	2217
BseBI	CCWGG	3 cut(s)	1554, 1607, 1863
BseCI	ATCGAT	1 cut(s)	2215
BseDI	CCNNGG	3 cut(s)	84, 477, 693
BseJI	GATNNNNATC	1 cut(s)	2217
BseLI	CCNNNNNNNGG	6 cut(s)	360, 361, 385, 501, 894, 1797
BseMI	GCAATG	4 cut(s)	1368, 1386, 1403, 2245
BseMII	CTCAG	3 cut(s)	692, 2175, 2198
BseNI	ACTGG	2 cut(s)	2079, 2270
BseRI	GAGGAG	1 cut(s)	860
BseSI	GKGCMC	1 cut(s)	440
BseXI	GCAGC	4 cut(s)	253, 1184, 1357, 1603
BseYI	CCCAGC	1 cut(s)	538
Bsh1236I	CGCG	3 cut(s)	610, 1690, 2124
BshFI	GGCC	1 cut(s)	476
BshNI	GGYRCC	2 cut(s)	80, 1019
BshVI	ATCGAT	1 cut(s)	2215
BsiHKAI	GWGCWC	3 cut(s)	486, 1059, 1672
BsiHKCI	CYCGRG	1 cut(s)	692
BsiSI	CCGG	4 cut(s)	86, 386, 487, 935
BslFI	GGGAC	4 cut(s)	208, 675, 1119, 1990
BslI	CCNNNNNNNGG	6 cut(s)	360, 361, 385, 501, 894, 1797
BsmAI	GTCTC	3 cut(s)	1328, 1335, 2145
BsmBI	CGTCTC	1 cut(s)	1335
BsmFI	GGGAC	4 cut(s)	208, 675, 1119, 1990
BsnI	GGCC	1 cut(s)	476
BsoBI	CYCGRG	1 cut(s)	692
Bsp1286I	GDGCHC	4 cut(s)	440, 486, 1059, 1672
Bsp1407I	TGTACA	1 cut(s)	552
Bsp143I	GATC	3 cut(s)	1198, 1744, 2212
Bsp1720I	GCTNAGC	1 cut(s)	2169
BspANI	GGCC	1 cut(s)	476
BspCNI	CTCAG	3 cut(s)	691, 2174, 2199
BspDI	ATCGAT	1 cut(s)	2215
BspFNI	CGCG	3 cut(s)	610, 1690, 2124
BspHI	TCATGA	1 cut(s)	1897
BspLI	GGNNCC	6 cut(s)	82, 1021, 1134, 1135, 1746, 1762
BspMAI	CTGCAG	1 cut(s)	414
BspPI	GGATC	2 cut(s)	1739, 1752
BspT107I	GGYRCC	2 cut(s)	80, 1019
BsrDI	GCAATG	4 cut(s)	1368, 1386, 1403, 2245
BsrGI	TGTACA	1 cut(s)	552
BsrI	ACTGG	2 cut(s)	2079, 2270
BssECI	CCNNGG	3 cut(s)	84, 477, 693
BssMI	GATC	3 cut(s)	1198, 1744, 2212
Bst2UI	CCWGG	3 cut(s)	1554, 1607, 1863
Bst4CI	ACNGT	4 cut(s)	118, 689, 1082, 1516
Bst6I	CTCTTC	2 cut(s)	620, 2025
BstAPI	GCANNNNNTGC	1 cut(s)	1367
BstAUI	TGTACA	1 cut(s)	552
BstBAI	YACGTR	1 cut(s)	1047
BstC8I	GCNNGC	4 cut(s)	304, 778, 1170, 1573
BstDEI	CTNAG	6 cut(s)	678, 1434, 2161, 2169, 2181, 2207
BstEII	GGTNACC	1 cut(s)	1601
BstFNI	CGCG	3 cut(s)	610, 1690, 2124
BstHHI	GCGC	4 cut(s)	610, 782, 1478, 1692
BstKTI	GATC	3 cut(s)	1201, 1747, 2215
BstMAI	GTCTC	3 cut(s)	1328, 1335, 2145
BstMBI	GATC	3 cut(s)	1198, 1744, 2212
BstMWI	GCNNNNNNNGC	5 cut(s)	788, 1367, 1376, 1482, 1718
BstNI	CCWGG	3 cut(s)	1554, 1607, 1863
BstNSI	RCATGY	5 cut(s)	827, 1220, 1282, 1686, 2051
BstPI	GGTNACC	1 cut(s)	1601
BstSCI	CCNGG	6 cut(s)	84, 384, 486, 1552, 1605, 1861
BstSFI	CTRYAG	1 cut(s)	410
BstSLI	GKGCMC	1 cut(s)	440
BstUI	CGCG	3 cut(s)	610, 1690, 2124
BstV1I	GCAGC	4 cut(s)	253, 1184, 1357, 1603
BstV2I	GAAGAC	2 cut(s)	69, 1099
BstX2I	RGATCY	1 cut(s)	1744
BstYI	RGATCY	1 cut(s)	1744
Bsu15I	ATCGAT	1 cut(s)	2215
BsuI	GTATCC	1 cut(s)	1206
BsuRI	GGCC	1 cut(s)	476
BsuTUI	ATCGAT	1 cut(s)	2215
BtrI	CACGTC	2 cut(s)	104, 1010
Cac8I	GCNNGC	4 cut(s)	304, 778, 1170, 1573
CaiI	CAGNNNCTG	1 cut(s)	1817
CciI	TCATGA	1 cut(s)	1897
CfoI	GCGC	4 cut(s)	610, 782, 1478, 1692
Cfr13I	GGNCC	1 cut(s)	1133
ClaI	ATCGAT	1 cut(s)	2215
CsiI	ACCWGGT	1 cut(s)	1861
Csp6I	GTAC	5 cut(s)	553, 1020, 1164, 1686, 1769
CviQI	GTAC	5 cut(s)	553, 1020, 1164, 1686, 1769
DdeI	CTNAG	6 cut(s)	678, 1434, 2161, 2169, 2181, 2207
DpnI	GATC	3 cut(s)	1200, 1746, 2214
DpnII	GATC	3 cut(s)	1198, 1744, 2212
DraI	TTTAAA	1 cut(s)	24
DrdI	GACNNNNNNGTC	1 cut(s)	1349
DriI	GACNNNNNGTC	1 cut(s)	949
DseDI	GACNNNNNNGTC	1 cut(s)	1349
Eam1104I	CTCTTC	2 cut(s)	620, 2025
Eam1105I	GACNNNNNGTC	1 cut(s)	949
EarI	CTCTTC	2 cut(s)	620, 2025
EciI	GGCGGA	2 cut(s)	743, 806
Ecl136II	GAGCTC	2 cut(s)	484, 1670
Eco24I	GRGCYC	2 cut(s)	486, 1672
Eco32I	GATATC	2 cut(s)	1942, 2219
Eco47I	GGWCC	1 cut(s)	1133
Eco53kI	GAGCTC	2 cut(s)	484, 1670
Eco88I	CYCGRG	1 cut(s)	692
Eco91I	GGTNACC	1 cut(s)	1601
EcoICRI	GAGCTC	2 cut(s)	484, 1670
EcoO109I	RGGNCCY	1 cut(s)	1133
EcoO65I	GGTNACC	1 cut(s)	1601
EcoRI	GAATTC	1 cut(s)	655
EcoRII	CCWGG	3 cut(s)	1552, 1605, 1861
EcoRV	GATATC	2 cut(s)	1942, 2219
EcoT22I	ATGCAT	2 cut(s)	1386, 1405
EcoT38I	GRGCYC	2 cut(s)	486, 1672
Esp3I	CGTCTC	1 cut(s)	1335
FaqI	GGGAC	4 cut(s)	208, 675, 1119, 1990
FauI	CCCGC	2 cut(s)	584, 887
Fnu4HI	GCNGC	7 cut(s)	267, 270, 474, 1173, 1207, 1371, 1617
FriOI	GRGCYC	2 cut(s)	486, 1672
Fsp4HI	GCNGC	7 cut(s)	267, 270, 474, 1173, 1207, 1371, 1617
FspBI	CTAG	8 cut(s)	77, 249, 1005, 1029, 1157, 1301, 1427, 1907
FspI	TGCGCA	1 cut(s)	781
GlaI	GCGC	4 cut(s)	609, 781, 1477, 1691
GluI	GCNGC	7 cut(s)	267, 270, 474, 1173, 1207, 1371, 1617
GsaI	CCCAGC	1 cut(s)	542
GsuI	CTGGAG	2 cut(s)	358, 1375
HaeIII	GGCC	1 cut(s)	476
HapII	CCGG	4 cut(s)	86, 386, 487, 935
HhaI	GCGC	4 cut(s)	610, 782, 1478, 1692
Hin6I	GCGC	4 cut(s)	608, 780, 1476, 1690
HinP1I	GCGC	4 cut(s)	608, 780, 1476, 1690
HincII	GTYRAC	1 cut(s)	1582
HindII	GTYRAC	1 cut(s)	1582
HindIII	AAGCTT	3 cut(s)	1829, 2171, 2183
HinfI	GANTC	3 cut(s)	1297, 1841, 2134
HpaII	CCGG	4 cut(s)	86, 386, 487, 935
HphI	GGTGA	2 cut(s)	1247, 1450
Hpy166II	GTNNAC	5 cut(s)	342, 450, 553, 957, 1582
Hpy188I	TCNGA	6 cut(s)	481, 547, 984, 1988, 2208, 2237
Hpy188III	TCNNGA	7 cut(s)	326, 692, 1034, 1301, 1354, 1845, 1898
Hpy8I	GTNNAC	5 cut(s)	342, 450, 553, 957, 1582
Hpy99I	CGWCG	2 cut(s)	320, 425
HpyAV	CCTTC	7 cut(s)	140, 631, 934, 1300, 1665, 2035, 2069
HpyCH4III	ACNGT	4 cut(s)	118, 689, 1082, 1516
HpyCH4IV	ACGT	7 cut(s)	51, 103, 221, 945, 1009, 1046, 1344
HpyF10VI	GCNNNNNNNGC	5 cut(s)	788, 1367, 1376, 1482, 1718
HpyF3I	CTNAG	6 cut(s)	678, 1434, 2161, 2169, 2181, 2207
HpySE526I	ACGT	7 cut(s)	51, 103, 221, 945, 1009, 1046, 1344
HspAI	GCGC	4 cut(s)	608, 780, 1476, 1690
KflI	GGGWCCC	1 cut(s)	1133
KpnI	GGTACC	1 cut(s)	1023
Kzo9I	GATC	3 cut(s)	1198, 1744, 2212
LmnI	GCTCC	7 cut(s)	481, 489, 1190, 1531, 1667, 1760, 2105
Lsp1109I	GCAGC	4 cut(s)	253, 1184, 1357, 1603
LweI	GCATC	7 cut(s)	54, 201, 405, 405, 898, 921, 1390
MabI	ACCWGGT	1 cut(s)	1861
MaeI	CTAG	8 cut(s)	77, 249, 1005, 1029, 1157, 1301, 1427, 1907
MaeII	ACGT	7 cut(s)	51, 103, 221, 945, 1009, 1046, 1344
MaeIII	GTNAC	6 cut(s)	52, 751, 1150, 1253, 1453, 1601
MalI	GATC	3 cut(s)	1200, 1746, 2214
MboI	GATC	3 cut(s)	1198, 1744, 2212
MfeI	CAATTG	2 cut(s)	1184, 1875
MflI	RGATCY	1 cut(s)	1744
MhlI	GDGCHC	4 cut(s)	440, 486, 1059, 1672
MmeI	TCCRAC	3 cut(s)	632, 684, 1935
Mph1103I	ATGCAT	2 cut(s)	1386, 1405
MseI	TTAA	7 cut(s)	23, 561, 714, 1323, 1521, 1823, 2054
MslI	CAYNNNNRTG	4 cut(s)	50, 579, 1221, 1698
MspA1I	CMGCKG	1 cut(s)	266
MspI	CCGG	4 cut(s)	86, 386, 487, 935
MspR9I	CCNGG	6 cut(s)	86, 386, 488, 1554, 1607, 1863
MunI	CAATTG	2 cut(s)	1184, 1875
MvaI	CCWGG	3 cut(s)	1554, 1607, 1863
MvnI	CGCG	3 cut(s)	610, 1690, 2124
MwoI	GCNNNNNNNGC	5 cut(s)	788, 1367, 1376, 1482, 1718
NciI	CCSGG	3 cut(s)	86, 386, 488
NdeII	GATC	3 cut(s)	1198, 1744, 2212
NlaIV	GGNNCC	6 cut(s)	82, 1021, 1134, 1135, 1746, 1762
NmeAIII	GCCGAG	1 cut(s)	559
NmuCI	GTSAC	4 cut(s)	52, 751, 1253, 1453
NsbI	TGCGCA	1 cut(s)	781
NsiI	ATGCAT	2 cut(s)	1386, 1405
NspI	RCATGY	5 cut(s)	827, 1220, 1282, 1686, 2051
PagI	TCATGA	1 cut(s)	1897
PciI	ACATGT	2 cut(s)	1216, 1278
PcsI	WCGNNNNNNNCGW	1 cut(s)	1172
PfeI	GAWTC	3 cut(s)	1297, 1841, 2134
PkrI	GCNGC	7 cut(s)	268, 271, 475, 1174, 1208, 1372, 1618
Ppu21I	YACGTR	1 cut(s)	1047
PpuMI	RGGWCCY	1 cut(s)	1133
PscI	ACATGT	2 cut(s)	1216, 1278
PsiI	TTATAA	2 cut(s)	633, 2190
Psp124BI	GAGCTC	2 cut(s)	486, 1672
Psp5II	RGGWCCY	1 cut(s)	1133
Psp6I	CCWGG	3 cut(s)	1552, 1605, 1861
PspEI	GGTNACC	1 cut(s)	1601
PspFI	CCCAGC	1 cut(s)	538
PspGI	CCWGG	3 cut(s)	1552, 1605, 1861
PspN4I	GGNNCC	6 cut(s)	82, 1021, 1134, 1135, 1746, 1762
PspPI	GGNCC	1 cut(s)	1133
PspPPI	RGGWCCY	1 cut(s)	1133
PstI	CTGCAG	1 cut(s)	414
PstNI	CAGNNNCTG	1 cut(s)	1817
PsuI	RGATCY	1 cut(s)	1744
PvuII	CAGCTG	1 cut(s)	266
RsaI	GTAC	5 cut(s)	554, 1021, 1165, 1687, 1770
RsaNI	GTAC	5 cut(s)	553, 1020, 1164, 1686, 1769
RseI	CAYNNNNRTG	4 cut(s)	50, 579, 1221, 1698
SacI	GAGCTC	2 cut(s)	486, 1672
SaqAI	TTAA	7 cut(s)	23, 561, 714, 1323, 1521, 1823, 2054
SatI	GCNGC	7 cut(s)	267, 270, 474, 1173, 1207, 1371, 1617
Sau3AI	GATC	3 cut(s)	1198, 1744, 2212
Sau96I	GGNCC	1 cut(s)	1133
ScrFI	CCNGG	6 cut(s)	86, 386, 488, 1554, 1607, 1863
SduI	GDGCHC	4 cut(s)	440, 486, 1059, 1672
SexAI	ACCWGGT	1 cut(s)	1861
SfaNI	GCATC	7 cut(s)	54, 201, 405, 405, 898, 921, 1390
SfcI	CTRYAG	1 cut(s)	410
SinI	GGWCC	1 cut(s)	1133
SmiMI	CAYNNNNRTG	4 cut(s)	50, 579, 1221, 1698
SmlI	CTYRAG	3 cut(s)	191, 467, 1313
SmoI	CTYRAG	3 cut(s)	191, 467, 1313
SspMI	CTAG	8 cut(s)	77, 249, 1005, 1029, 1157, 1301, 1427, 1907
SstI	GAGCTC	2 cut(s)	486, 1672
StyD4I	CCNGG	6 cut(s)	84, 384, 486, 1552, 1605, 1861
TaaI	ACNGT	4 cut(s)	118, 689, 1082, 1516
TaiI	ACGT	7 cut(s)	54, 106, 224, 948, 1012, 1049, 1347
TaqI	TCGA	7 cut(s)	234, 287, 294, 315, 420, 1737, 2215
TatI	WGTACW	2 cut(s)	552, 1768
TauI	GCSGC	3 cut(s)	272, 476, 1209
TfiI	GAWTC	3 cut(s)	1297, 1841, 2134
Tru1I	TTAA	7 cut(s)	23, 561, 714, 1323, 1521, 1823, 2054
Tru9I	TTAA	7 cut(s)	23, 561, 714, 1323, 1521, 1823, 2054
TseFI	GTSAC	4 cut(s)	52, 751, 1253, 1453
TseI	GCWGC	4 cut(s)	266, 1172, 1370, 1616
Tsp45I	GTSAC	4 cut(s)	52, 751, 1253, 1453
VpaK11BI	GGWCC	1 cut(s)	1133
XapI	RAATTY	3 cut(s)	321, 655, 1901
XbaI	TCTAGA	1 cut(s)	1300
XceI	RCATGY	5 cut(s)	827, 1220, 1282, 1686, 2051
XspI	CTAG	8 cut(s)	77, 249, 1005, 1029, 1157, 1301, 1427, 1907
Zsp2I	ATGCAT	2 cut(s)	1386, 1405

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.