Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Contig00235

Orthogroup ID

OG0006627

Physical Location & Seq

Genomic Coordinates Reverse (-)

69823 .. 72353

Gene Structure 2531 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw0G006080.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2208 bp

ATGGCAACTCTAGGCACCCCAGTCCCACGTCATCCCACCACTCCCTCCCCAACCGTCAATAACGACCTTCGCTTCCCAACCCAACCGATTCTCCCACTGATAGACCAATGCACCACCATCAACCAGCTCAAGCAAGTCCATGCCCAAATGCTCAAAACAGCCCTATTCTTCGACCCTTATTCCGCCAGTAAGCTCATCACGGCTGCTGCGCTCTCTTCCTTCTCGAGCCTCGACTATGCACGCCAAGTGTTCGACGAAATTCCTGACCCAAATCTGTTCACTTGGAACGCCCTCATTCGCGCGTACGCGTCCAGCCCCGACCCAGTTGAAAGCATTGTCGTATTTCTGCAGATGCTCGACGAATGTGATGAGTGCCCCAATAAGTTTACTTTCCCTTTTTTGCTCAAGGCCGCCTCGGAGCTCCGGGCTTCCAAGGTTGGGAGAGGTTTTCATGCCATGGTGATAAAAGCCGAGCTGGGTTCGGATGTTTATATTGTTAATTCGCTCATTCACTTTTATGGGTCGTGCGGGGATTTGGATTTGGCGCGTTTGGTGTTTTTGAAGACTTACAAAAAGGATGTTGTTACTTGGAATTCTGTTATCACGGCTTTTGCTCAGGGGAATTGCCCTGAGGTGGCGTTGGAGTTGTTTAAGGAAATGGAGGCGGAGAATATGAGGCCGAATGATGTCACCATGGTTAGTGTCTTGTCAGCTTGCGCAAAGAAGGCGGATTTGGAGTTTGGGAGGTGGGTTTGTTTGAATGTTGAAAGGCATGGAGTTGAAGAGAACTTGACTTTGAATAATGCTATGCTAGATATGTATGTGAAATGCGGGAGTGTTGAAGATGCGGAGAGATTGTTTGGAAGGATGCCGGAGAAGGACGTTGTGTCGTGGACTACTATGCTTGATGGGTATGCTCGGATGGGGAAATATGATGAGGCTAGGCGTGTTTTTGCTGCCATGCCTAGTCAGGATATTGCTGCGTGGAATGTCCTCATTTCATCTTATGAACAGAATGGCAGGCCGAAAGAGGCTTTAGCTGTCTTCCATGAGTTGCAGAAGAACAAGGGTCCCAAGCCTGATGAGGTTACTCTAGTTAGTACTCTGGCAGCGTGTGCTCAATTGGGAGCGATTGATCTTGGCGGCTGGATACATGTTTACGTAAAGAAGCAGGGAATGAAGTTGAATTGTCACCTCACAACCTCGCTTATCGACATGTATGCAAAATGCGGAAATCTAGAGAAGGCACTTGAGGTTTTTAATTCGGTGGAGATGAGAGACGTATTTGTTTGGAGCGCCATGATTGCTGCTTTGGCAATGCATGGTCAGGGGAGGGATGCATTGCACTTTTTCTCAAAAATGCTAGAAGCTAAGGTGAAGCCAAATGCTGTGACATTTACTAACATATTATGCGCATGTAGCCATGCAGGATTGGTGGATGAGGGAAGAATATTTTTCTATCAAATGGAGCGAGTTTATGGAGTTGTGCCTGGAATAAAGCACTATGCGTGCATGGTTGACATTCTTGGTCGTTCAGGTAATCTGGAGGAAGCTGCAGAACTGATAGAGAAAATGCCAATTTCTCCCACTCCTTCTGTATGGGGGGCTCTGCTTGGTGCATGTACGCGCCATGGGAATATTGCACTTGCTGAAAAGGCTTGTAGCCATTTGCTCGACTTGGATCCCAGAAATCATGGAGCCTATGTACTCCTATCAAATATATATGCCAAAACAGGGAAATGGGAAGCAGTTTCTGGGTTAAGGAAGCTCATGCGAGATTCTGGAATAAAGAAAGAACCTGGTTGTAGCTCAATTGAAATCAACGGTAGTGTTCATGAATTTCTAGTTGGTGATAATACTCATCCTTTATCCAAAGATATCTACTCAAAGTTGGATGAGATAGCAGGGAGATTGAAGTCAATCGGATATGTGCCAAACAAGTCACACCTACTGCAATTTGTTGAGGAAGAGGACATGAAGGAACAGGCCCTAATTCTTCATAGTGAGAAACTAGCGATTGCCTTTGGACTTATTAGCTCCAAGCCATCTCAATCAATTCGCGTTGTGAAGAATCTTCGTGTTTGTGGAGACTGCCACTCAGTTGCTAAGCTTATATCGAAGCTTTATAATAGGGAGATATTTCTGAGAGATCGATATCGGTTTCATCATTTTAGAGAGGGGCATTGTTCATGTAATGATTACTGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006139 GO:0006396 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009507 GO:0009536 GO:0009987 GO:0010467 GO:0016070 GO:0016787 GO:0016788 GO:0031425 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DYW_deaminase PPR

Protein Analysis

735

Amino Acids

81.99

Weight (kDa)

6.55

Isoelectric Point (pI)

43.44

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPR_2	PF13041	192 - 241	2.1e-11	PPR repeat family
PPR	PF01535	195 - 224	1.6e-06	PPR repeat
PPR_2	PF13041	293 - 324	3.5e-06	PPR repeat family
PPR	PF01535	296 - 324	1.1e-06	PPR repeat
PPR_2	PF13041	325 - 373	4.4e-08	PPR repeat family
PPR	PF01535	328 - 355	4.5e-06	PPR repeat
PPR_2	PF13041	426 - 474	4e-10	PPR repeat family
E_motif	PF20431	544 - 606	7.4e-22	E motif
Eplus_motif	PF20430	611 - 637	6.2e-08	E+ motif
DYW_deaminase	PF14432	642 - 735	3.8e-36	DYW family of nucleic acid deaminases

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006627)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G29760
fragaria_vesca	FvH4_3g38420
malus_domestica	MD03G1072100.v1.1 MD11G1076100.v1.1 MD11G1076300.v1.1 MD11G1076700.v1.1
prunus_persica	Prupe.6G058800_v2.0.a1
pyrus_communis	pycom03g05830 pycom12g05280
rosa_chinensis	RchiOBHm_Chr5g0069041 RchiOBHm_Chr5g0069081
rosa_laevigata	RLG00000017743 RLG00000036033
rosa_multiflora	Rmu_co8508453.1_g000001 Rmu_sc0000853.1_g000010 Rmu_sc0000853.1_g000011 Rmu_sc0000936.1_g000009
rosa_roxburghii	Rroxscaffold_1G00011680
rosa_rugosa	Rorug05G0395900
rosa_samantha	Rh5AG452500 Rh5AG482500 Rh5BG471800 Rh5BG503600 Rh5CG494200
rosa_wichuraiana	Rw0G006080 Rw5G042280

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	2127
Acc16I	TGCGCA	2 cut(s)	718, 1414
AccB1I	GGYRCC	1 cut(s)	14
AccII	CGCG	6 cut(s)	300, 302, 308, 547, 1627, 2061
AciI	CCGC	9 cut(s)	183, 411, 528, 665, 728, 831, 848, 1143, 1230
AclWI	GGATC	2 cut(s)	1676, 1689
AcsI	RAATTY	3 cut(s)	258, 592, 1838
AfaI	GTAC	4 cut(s)	305, 1102, 1624, 1707
AfiI	CCNNNNNNNGG	3 cut(s)	438, 634, 1734
AflIII	ACRYGT	3 cut(s)	306, 1153, 1215
AhdI	GACNNNNNGTC	1 cut(s)	886
AjiI	CACGTC	1 cut(s)	29
AjnI	CCWGG	2 cut(s)	1489, 1798
AjuI	GAANNNNNNNTTGG	4 cut(s)	716, 748, 1830, 1862
Alw21I	GWGCWC	2 cut(s)	423, 1120
Alw26I	GTCTC	2 cut(s)	1272, 2082
AlwI	GGATC	2 cut(s)	1676, 1689
AlwNI	CAGNNNCTG	1 cut(s)	1754
Ama87I	CYCGRG	1 cut(s)	223
AoxI	GGCC	4 cut(s)	408, 677, 1022, 1986
ApeKI	GCWGC	7 cut(s)	203, 206, 956, 980, 1109, 1307, 1553
ApoI	RAATTY	3 cut(s)	258, 592, 1838
AspLEI	GCGC	7 cut(s)	211, 302, 547, 719, 1298, 1415, 1629
AspS9I	GGNCC	2 cut(s)	1070, 1987
AsuC2I	CCSGG	1 cut(s)	425
AsuHPI	GGTGA	5 cut(s)	472, 682, 1184, 1387, 1862
AvaI	CYCGRG	1 cut(s)	223
AvaII	GGWCC	1 cut(s)	1070
AxyI	CCTNAGG	1 cut(s)	630
BaeGI	GKGCMC	1 cut(s)	377
BamHI	GGATCC	1 cut(s)	1681
BanI	GGYRCC	1 cut(s)	14
BanII	GRGCYC	2 cut(s)	423, 1609
BbsI	GAAGAC	2 cut(s)	569, 1036
Bbv12I	GWGCWC	2 cut(s)	423, 1120
BbvI	GCAGC	7 cut(s)	190, 193, 943, 967, 1121, 1294, 1540
BccI	CCATC	4 cut(s)	125, 902, 916, 2053
BceAI	ACGGC	2 cut(s)	216, 621
BcgI	CGANNNNNNTGC	2 cut(s)	1202, 1236
BciT130I	CCWGG	2 cut(s)	1491, 1800
BciVI	GTATCC	1 cut(s)	1143
BcnI	CCSGG	1 cut(s)	425
BcoDI	GTCTC	2 cut(s)	1272, 2082
BfaI	CTAG	9 cut(s)	11, 812, 942, 966, 1094, 1238, 1364, 1844, 2012
BfmI	CTRYAG	2 cut(s)	347, 1554
BfoI	RGCGCY	1 cut(s)	1299
BfuI	GTATCC	1 cut(s)	1143
BisI	GCNGC	9 cut(s)	204, 207, 411, 957, 981, 1110, 1144, 1308, 1554
BlpI	GCTNAGC	1 cut(s)	2106
BlsI	GCNGC	9 cut(s)	205, 208, 412, 958, 982, 1111, 1145, 1309, 1555
BmcAI	AGTACT	1 cut(s)	1102
Bme1390I	CCNGG	3 cut(s)	425, 1491, 1800
Bme18I	GGWCC	1 cut(s)	1070
BmeRI	GACNNNNNGTC	1 cut(s)	886
BmeT110I	CYCGRG	1 cut(s)	223
BmgBI	CACGTC	1 cut(s)	29
BmgT120I	GGNCC	2 cut(s)	1070, 1987
BmiI	GGNNCC	5 cut(s)	16, 1071, 1072, 1683, 1699
BmrFI	CCNGG	3 cut(s)	425, 1491, 1800
BmrI	ACTGGG	2 cut(s)	14, 317
BmsI	GCATC	4 cut(s)	342, 835, 858, 1327
BmuI	ACTGGG	2 cut(s)	14, 317
BpiI	GAAGAC	2 cut(s)	569, 1036
BpmI	CTGGAG	1 cut(s)	1565
Bpu10I	CCTNAGC	2 cut(s)	615, 1371
Bpu1102I	GCTNAGC	1 cut(s)	2106
BpuEI	CTTGAG	3 cut(s)	113, 389, 1271
BpuMI	CCSGG	1 cut(s)	425
Bsa29I	ATCGAT	1 cut(s)	2152
BsaAI	YACGTR	1 cut(s)	1162
BsaBI	GATNNNNATC	1 cut(s)	2154
BsaJI	CCNNGG	5 cut(s)	414, 432, 456, 693, 1630
BsaXI	ACNNNNNCTCC	6 cut(s)	75, 105, 842, 872, 1689, 1719
Bsc4I	CCNNNNNNNGG	3 cut(s)	438, 634, 1734
Bse1I	ACTGG	4 cut(s)	20, 186, 323, 2207
Bse21I	CCTNAGG	1 cut(s)	630
Bse3DI	GCAATG	2 cut(s)	1323, 1340
Bse8I	GATNNNNATC	1 cut(s)	2154
BseBI	CCWGG	2 cut(s)	1491, 1800
BseCI	ATCGAT	1 cut(s)	2152
BseDI	CCNNGG	5 cut(s)	414, 432, 456, 693, 1630
BseGI	GGATG	9 cut(s)	31, 490, 583, 873, 927, 1342, 1444, 1861, 1900
BseJI	GATNNNNATC	1 cut(s)	2154
BseLI	CCNNNNNNNGG	3 cut(s)	438, 634, 1734
BseMI	GCAATG	2 cut(s)	1323, 1340
BseMII	CTCAG	4 cut(s)	621, 629, 2112, 2135
BseNI	ACTGG	4 cut(s)	20, 186, 323, 2207
BseSI	GKGCMC	1 cut(s)	377
BseXI	GCAGC	7 cut(s)	190, 193, 943, 967, 1121, 1294, 1540
BseYI	CCCAGC	1 cut(s)	475
Bsh1236I	CGCG	6 cut(s)	300, 302, 308, 547, 1627, 2061
BshFI	GGCC	4 cut(s)	410, 679, 1024, 1988
BshNI	GGYRCC	1 cut(s)	14
BshVI	ATCGAT	1 cut(s)	2152
BsiHKAI	GWGCWC	2 cut(s)	423, 1120
BsiHKCI	CYCGRG	1 cut(s)	223
BsiSI	CCGG	2 cut(s)	424, 872
BsiWI	CGTACG	1 cut(s)	303
BslFI	GGGAC	2 cut(s)	8, 1056
BslI	CCNNNNNNNGG	3 cut(s)	438, 634, 1734
BsmAI	GTCTC	2 cut(s)	1272, 2082
BsmBI	CGTCTC	1 cut(s)	1272
BsmFI	GGGAC	2 cut(s)	8, 1056
BsnI	GGCC	4 cut(s)	410, 679, 1024, 1988
BsoBI	CYCGRG	1 cut(s)	223
Bsp1286I	GDGCHC	4 cut(s)	377, 423, 1120, 1609
Bsp143I	GATC	3 cut(s)	1135, 1681, 2149
Bsp1720I	GCTNAGC	1 cut(s)	2106
Bsp19I	CCATGG	3 cut(s)	456, 693, 1630
BspACI	CCGC	9 cut(s)	183, 411, 528, 665, 728, 831, 848, 1143, 1230
BspANI	GGCC	4 cut(s)	410, 679, 1024, 1988
BspCNI	CTCAG	4 cut(s)	622, 628, 2111, 2136
BspDI	ATCGAT	1 cut(s)	2152
BspFNI	CGCG	6 cut(s)	300, 302, 308, 547, 1627, 2061
BspHI	TCATGA	1 cut(s)	1834
BspLI	GGNNCC	5 cut(s)	16, 1071, 1072, 1683, 1699
BspMAI	CTGCAG	2 cut(s)	351, 1558
BspPI	GGATC	2 cut(s)	1676, 1689
BspT107I	GGYRCC	1 cut(s)	14
BsrDI	GCAATG	2 cut(s)	1323, 1340
BsrI	ACTGG	4 cut(s)	20, 186, 323, 2207
BssECI	CCNNGG	5 cut(s)	414, 432, 456, 693, 1630
BssMI	GATC	3 cut(s)	1135, 1681, 2149
BssT1I	CCWWGG	4 cut(s)	432, 456, 693, 1630
Bst2UI	CCWGG	2 cut(s)	1491, 1800
Bst4CI	ACNGT	2 cut(s)	55, 1826
Bst6I	CTCTTC	3 cut(s)	220, 777, 1962
BstAPI	GCANNNNNTGC	1 cut(s)	1115
BstBAI	YACGTR	1 cut(s)	1162
BstC8I	GCNNGC	4 cut(s)	241, 715, 1022, 1510
BstDEI	CTNAG	6 cut(s)	615, 630, 1371, 2098, 2106, 2144
BstDSI	CCRYGG	3 cut(s)	456, 693, 1630
BstF5I	GGATG	9 cut(s)	31, 490, 583, 873, 927, 1342, 1444, 1861, 1900
BstFNI	CGCG	6 cut(s)	300, 302, 308, 547, 1627, 2061
BstH2I	RGCGCY	1 cut(s)	1299
BstHHI	GCGC	7 cut(s)	211, 302, 547, 719, 1298, 1415, 1629
BstKTI	GATC	3 cut(s)	1138, 1684, 2152
BstMAI	GTCTC	2 cut(s)	1272, 2082
BstMBI	GATC	3 cut(s)	1135, 1681, 2149
BstMWI	GCNNNNNNNGC	6 cut(s)	725, 1115, 1304, 1313, 1419, 1655
BstNI	CCWGG	2 cut(s)	1491, 1800
BstNSI	RCATGY	4 cut(s)	1157, 1219, 1419, 1623
BstSCI	CCNGG	3 cut(s)	423, 1489, 1798
BstSFI	CTRYAG	2 cut(s)	347, 1554
BstSLI	GKGCMC	1 cut(s)	377
BstSNI	TACGTA	1 cut(s)	1162
BstUI	CGCG	6 cut(s)	300, 302, 308, 547, 1627, 2061
BstV1I	GCAGC	7 cut(s)	190, 193, 943, 967, 1121, 1294, 1540
BstV2I	GAAGAC	2 cut(s)	569, 1036
BstX2I	RGATCY	1 cut(s)	1681
BstYI	RGATCY	1 cut(s)	1681
Bsu15I	ATCGAT	1 cut(s)	2152
Bsu36I	CCTNAGG	1 cut(s)	630
BsuI	GTATCC	1 cut(s)	1143
BsuRI	GGCC	4 cut(s)	410, 679, 1024, 1988
BsuTUI	ATCGAT	1 cut(s)	2152
BtgI	CCRYGG	3 cut(s)	456, 693, 1630
BtrI	CACGTC	1 cut(s)	29
BtsCI	GGATG	9 cut(s)	31, 490, 583, 873, 927, 1342, 1444, 1861, 1900
BtsIMutI	CAGTG	1 cut(s)	95
Cac8I	GCNNGC	4 cut(s)	241, 715, 1022, 1510
CaiI	CAGNNNCTG	1 cut(s)	1754
CciI	TCATGA	1 cut(s)	1834
CfoI	GCGC	7 cut(s)	211, 302, 547, 719, 1298, 1415, 1629
Cfr13I	GGNCC	2 cut(s)	1070, 1987
ClaI	ATCGAT	1 cut(s)	2152
CseI	GACGC	1 cut(s)	297
CsiI	ACCWGGT	1 cut(s)	1798
Csp6I	GTAC	4 cut(s)	304, 1101, 1623, 1706
CviQI	GTAC	4 cut(s)	304, 1101, 1623, 1706
DdeI	CTNAG	6 cut(s)	615, 630, 1371, 2098, 2106, 2144
DpnI	GATC	3 cut(s)	1137, 1683, 2151
DpnII	GATC	3 cut(s)	1135, 1681, 2149
DriI	GACNNNNNGTC	1 cut(s)	886
Eam1104I	CTCTTC	3 cut(s)	220, 777, 1962
Eam1105I	GACNNNNNGTC	1 cut(s)	886
EarI	CTCTTC	3 cut(s)	220, 777, 1962
EciI	GGCGGA	3 cut(s)	172, 680, 743
Ecl136II	GAGCTC	1 cut(s)	421
Eco105I	TACGTA	1 cut(s)	1162
Eco130I	CCWWGG	4 cut(s)	432, 456, 693, 1630
Eco24I	GRGCYC	2 cut(s)	423, 1609
Eco32I	GATATC	2 cut(s)	1879, 2156
Eco47I	GGWCC	1 cut(s)	1070
Eco53kI	GAGCTC	1 cut(s)	421
Eco81I	CCTNAGG	1 cut(s)	630
Eco88I	CYCGRG	1 cut(s)	223
EcoICRI	GAGCTC	1 cut(s)	421
EcoO109I	RGGNCCY	2 cut(s)	1070, 1987
EcoRI	GAATTC	1 cut(s)	592
EcoRII	CCWGG	2 cut(s)	1489, 1798
EcoRV	GATATC	2 cut(s)	1879, 2156
EcoT14I	CCWWGG	4 cut(s)	432, 456, 693, 1630
EcoT22I	ATGCAT	2 cut(s)	1323, 1342
EcoT38I	GRGCYC	2 cut(s)	423, 1609
ErhI	CCWWGG	4 cut(s)	432, 456, 693, 1630
Esp3I	CGTCTC	1 cut(s)	1272
FaqI	GGGAC	2 cut(s)	8, 1056
FauI	CCCGC	2 cut(s)	521, 824
Fnu4HI	GCNGC	9 cut(s)	204, 207, 411, 957, 981, 1110, 1144, 1308, 1554
FokI	GGATG	9 cut(s)	18, 497, 590, 880, 934, 1349, 1451, 1848, 1907
FriOI	GRGCYC	2 cut(s)	423, 1609
Fsp4HI	GCNGC	9 cut(s)	204, 207, 411, 957, 981, 1110, 1144, 1308, 1554
FspAI	RTGCGCAY	1 cut(s)	1414
FspBI	CTAG	9 cut(s)	11, 812, 942, 966, 1094, 1238, 1364, 1844, 2012
FspI	TGCGCA	2 cut(s)	718, 1414
GlaI	GCGC	7 cut(s)	210, 301, 546, 718, 1297, 1414, 1628
GluI	GCNGC	9 cut(s)	204, 207, 411, 957, 981, 1110, 1144, 1308, 1554
GsaI	CCCAGC	1 cut(s)	479
GsuI	CTGGAG	1 cut(s)	1565
HaeII	RGCGCY	1 cut(s)	1299
HaeIII	GGCC	4 cut(s)	410, 679, 1024, 1988
HapII	CCGG	2 cut(s)	424, 872
HgaI	GACGC	1 cut(s)	297
HhaI	GCGC	7 cut(s)	211, 302, 547, 719, 1298, 1415, 1629
Hin6I	GCGC	7 cut(s)	209, 300, 545, 717, 1296, 1413, 1627
HinP1I	GCGC	7 cut(s)	209, 300, 545, 717, 1296, 1413, 1627
HincII	GTYRAC	1 cut(s)	1519
HindII	GTYRAC	1 cut(s)	1519
HindIII	AAGCTT	2 cut(s)	2108, 2120
HinfI	GANTC	3 cut(s)	88, 1778, 2071
HpaII	CCGG	2 cut(s)	424, 872
HphI	GGTGA	5 cut(s)	472, 682, 1184, 1387, 1862
Hpy166II	GTNNAC	5 cut(s)	279, 387, 894, 1159, 1519
Hpy188I	TCNGA	5 cut(s)	418, 484, 921, 1925, 2145
Hpy188III	TCNNGA	7 cut(s)	223, 263, 971, 1238, 1544, 1782, 1835
Hpy8I	GTNNAC	5 cut(s)	279, 387, 894, 1159, 1519
Hpy99I	CGWCG	2 cut(s)	257, 362
HpyAV	CCTTC	8 cut(s)	77, 229, 718, 858, 871, 1237, 1602, 1972
HpyCH4III	ACNGT	2 cut(s)	55, 1826
HpyCH4IV	ACGT	4 cut(s)	28, 882, 1161, 1281
HpyF10VI	GCNNNNNNNGC	6 cut(s)	725, 1115, 1304, 1313, 1419, 1655
HpyF3I	CTNAG	6 cut(s)	615, 630, 1371, 2098, 2106, 2144
HpySE526I	ACGT	4 cut(s)	28, 882, 1161, 1281
HspAI	GCGC	7 cut(s)	209, 300, 545, 717, 1296, 1413, 1627
KflI	GGGWCCC	1 cut(s)	1070
Kzo9I	GATC	3 cut(s)	1135, 1681, 2149
LmnI	GCTCC	7 cut(s)	418, 426, 1127, 1293, 1468, 1697, 2042
Lsp1109I	GCAGC	7 cut(s)	190, 193, 943, 967, 1121, 1294, 1540
LweI	GCATC	4 cut(s)	342, 835, 858, 1327
MabI	ACCWGGT	1 cut(s)	1798
MaeI	CTAG	9 cut(s)	11, 812, 942, 966, 1094, 1238, 1364, 1844, 2012
MaeII	ACGT	4 cut(s)	28, 882, 1161, 1281
MaeIII	GTNAC	6 cut(s)	583, 688, 1087, 1190, 1390, 1941
MalI	GATC	3 cut(s)	1137, 1683, 2151
MboI	GATC	3 cut(s)	1135, 1681, 2149
MfeI	CAATTG	2 cut(s)	1121, 1812
MflI	RGATCY	1 cut(s)	1681
MhlI	GDGCHC	4 cut(s)	377, 423, 1120, 1609
MluI	ACGCGT	1 cut(s)	306
MmeI	TCCRAC	2 cut(s)	621, 1872
Mph1103I	ATGCAT	2 cut(s)	1323, 1342
MseI	TTAA	4 cut(s)	498, 651, 1260, 1760
MslI	CAYNNNNRTG	1 cut(s)	516
MspI	CCGG	2 cut(s)	424, 872
MspR9I	CCNGG	3 cut(s)	425, 1491, 1800
MunI	CAATTG	2 cut(s)	1121, 1812
MvaI	CCWGG	2 cut(s)	1491, 1800
MvnI	CGCG	6 cut(s)	300, 302, 308, 547, 1627, 2061
MwoI	GCNNNNNNNGC	6 cut(s)	725, 1115, 1304, 1313, 1419, 1655
NciI	CCSGG	1 cut(s)	425
NcoI	CCATGG	3 cut(s)	456, 693, 1630
NdeII	GATC	3 cut(s)	1135, 1681, 2149
NlaIV	GGNNCC	5 cut(s)	16, 1071, 1072, 1683, 1699
NmeAIII	GCCGAG	1 cut(s)	496
NmuCI	GTSAC	4 cut(s)	688, 1190, 1390, 1941
NsbI	TGCGCA	2 cut(s)	718, 1414
NsiI	ATGCAT	2 cut(s)	1323, 1342
NspI	RCATGY	4 cut(s)	1157, 1219, 1419, 1623
PaeR7I	CTCGAG	1 cut(s)	223
PagI	TCATGA	1 cut(s)	1834
PciI	ACATGT	2 cut(s)	1153, 1215
PfeI	GAWTC	3 cut(s)	88, 1778, 2071
Pfl23II	CGTACG	1 cut(s)	303
PkrI	GCNGC	9 cut(s)	205, 208, 412, 958, 982, 1111, 1145, 1309, 1555
Ppu21I	YACGTR	1 cut(s)	1162
PpuMI	RGGWCCY	1 cut(s)	1070
PscI	ACATGT	2 cut(s)	1153, 1215
PsiI	TTATAA	1 cut(s)	2127
Psp124BI	GAGCTC	1 cut(s)	423
Psp5II	RGGWCCY	1 cut(s)	1070
Psp6I	CCWGG	2 cut(s)	1489, 1798
PspFI	CCCAGC	1 cut(s)	475
PspGI	CCWGG	2 cut(s)	1489, 1798
PspLI	CGTACG	1 cut(s)	303
PspN4I	GGNNCC	5 cut(s)	16, 1071, 1072, 1683, 1699
PspPI	GGNCC	2 cut(s)	1070, 1987
PspPPI	RGGWCCY	1 cut(s)	1070
PstI	CTGCAG	2 cut(s)	351, 1558
PstNI	CAGNNNCTG	1 cut(s)	1754
PsuI	RGATCY	1 cut(s)	1681
RsaI	GTAC	4 cut(s)	305, 1102, 1624, 1707
RsaNI	GTAC	4 cut(s)	304, 1101, 1623, 1706
RseI	CAYNNNNRTG	1 cut(s)	516
SacI	GAGCTC	1 cut(s)	423
SaqAI	TTAA	4 cut(s)	498, 651, 1260, 1760
SatI	GCNGC	9 cut(s)	204, 207, 411, 957, 981, 1110, 1144, 1308, 1554
Sau3AI	GATC	3 cut(s)	1135, 1681, 2149
Sau96I	GGNCC	2 cut(s)	1070, 1987
ScaI	AGTACT	1 cut(s)	1102
ScrFI	CCNGG	3 cut(s)	425, 1491, 1800
SduI	GDGCHC	4 cut(s)	377, 423, 1120, 1609
SexAI	ACCWGGT	1 cut(s)	1798
SfaNI	GCATC	4 cut(s)	342, 835, 858, 1327
SfcI	CTRYAG	2 cut(s)	347, 1554
Sfr274I	CTCGAG	1 cut(s)	223
SinI	GGWCC	1 cut(s)	1070
SlaI	CTCGAG	1 cut(s)	223
SmiMI	CAYNNNNRTG	1 cut(s)	516
SmlI	CTYRAG	4 cut(s)	128, 223, 404, 1250
SmoI	CTYRAG	4 cut(s)	128, 223, 404, 1250
SnaBI	TACGTA	1 cut(s)	1162
SsiI	CCGC	9 cut(s)	183, 411, 528, 665, 728, 831, 848, 1143, 1230
SspI	AATATT	2 cut(s)	1452, 1639
SspMI	CTAG	9 cut(s)	11, 812, 942, 966, 1094, 1238, 1364, 1844, 2012
SstI	GAGCTC	1 cut(s)	423
StyD4I	CCNGG	3 cut(s)	423, 1489, 1798
StyI	CCWWGG	4 cut(s)	432, 456, 693, 1630
TaaI	ACNGT	2 cut(s)	55, 1826
TaiI	ACGT	4 cut(s)	31, 885, 1164, 1284
TaqI	TCGA	9 cut(s)	171, 224, 231, 252, 357, 1212, 1674, 2117, 2152
TatI	WGTACW	2 cut(s)	1100, 1705
TauI	GCSGC	2 cut(s)	413, 1146
TfiI	GAWTC	3 cut(s)	88, 1778, 2071
Tru1I	TTAA	4 cut(s)	498, 651, 1260, 1760
Tru9I	TTAA	4 cut(s)	498, 651, 1260, 1760
TscAI	CASTG	1 cut(s)	102
TseFI	GTSAC	4 cut(s)	688, 1190, 1390, 1941
TseI	GCWGC	7 cut(s)	203, 206, 956, 980, 1109, 1307, 1553
Tsp45I	GTSAC	4 cut(s)	688, 1190, 1390, 1941
TspRI	CASTG	1 cut(s)	102
VpaK11BI	GGWCC	1 cut(s)	1070
XapI	RAATTY	3 cut(s)	258, 592, 1838
XbaI	TCTAGA	1 cut(s)	1237
XceI	RCATGY	4 cut(s)	1157, 1219, 1419, 1623
XhoI	CTCGAG	1 cut(s)	223
XspI	CTAG	9 cut(s)	11, 812, 942, 966, 1094, 1238, 1364, 1844, 2012
ZrmI	AGTACT	1 cut(s)	1102
Zsp2I	ATGCAT	2 cut(s)	1323, 1342

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.