Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0006627

Physical Location & Seq

Genomic Coordinates Forward (+)

74947812 .. 74948600

Gene Structure 789 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ34444

Sequence Viewer

CDS Protein Promoter (2k)

Length: 789 bp

ATGCATGGTCAGGGGAGGGATGCATTGCAGTTTTTCTCAAAAATGTTAGAAGTTGAGGTGAAGCCAAATGCTGTGACATTTACTAACATATTATGTGCGTGTAGCGATGCAGGATTGGCGGATGAGGGAAGAACATTTTTCTATCAAATGGAGCGAGTTTATGGAGTTGTGCCTGGAATAAAGCACTATGCGTGCATGGTTGACATTCTTGGTCATTCAGGTAATCTGGAGGAAGCTGCAGAACTGATAGAGAAAATGCCAATTTCCCCCACTCCTTCTGTATGGGGGGCTCTGCTTGGGGCATGTACGCGCCATGGGAATGTTGCACTTGTTGAGAAGGCTTGTAGCCATTTGCTCGACTTGGATCCCAGAAATCATAGAGCCTATGTACTCTTATCAAATACTTATGCCAAAACAGGGAAATGGGAAGCAGTTTCTGGGTTAAGGAAGCTCATGCGAGATTCTGGAATAAAGAAAGAACCTGGTTGTAGCTCAATCGAAATCAACGGTAGTGTTCATGAATTTCTAGTTGGTGATAATACTCATCCTTTATCCAAGGATATCTACTCAACGTTGGATGAGATAGCAGGGAGATTGAAGTCAATCGGATATGTGCCAAACAAGTCACACCTACTGCAATTTGTTGAGGAAGAGGACATGAAGGAACATGCCCTAATTCTTCATAGTGAGAAACTAGCGATTGCCTTTGGACTTATTAGCTCCAAGCCATCTCAACCAATTCGCGTTGTGAAGAATCTTCGTGTTTGTGGATGTACATACCTCCAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006139 GO:0006396 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009507 GO:0009536 GO:0009987 GO:0010467 GO:0016070 GO:0016787 GO:0016788 GO:0031425 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DYW_deaminase PPR

Protein Analysis

262

Amino Acids

28.88

Weight (kDa)

6.59

Isoelectric Point (pI)

50.66

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
E_motif	PF20431	105 - 167	1.5e-19	E motif
Eplus_motif	PF20430	172 - 198	1.2e-07	E+ motif
DYW_deaminase	PF14432	203 - 257	9.4e-13	DYW family of nucleic acid deaminases

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006627)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G29760
fragaria_vesca	FvH4_3g38420
malus_domestica	MD03G1072100.v1.1 MD11G1076100.v1.1 MD11G1076300.v1.1 MD11G1076700.v1.1
prunus_persica	Prupe.6G058800_v2.0.a1
pyrus_communis	pycom03g05830 pycom12g05280
rosa_chinensis	RchiOBHm_Chr5g0069041 RchiOBHm_Chr5g0069081
rosa_laevigata	RLG00000017743 RLG00000036033
rosa_multiflora	Rmu_co8508453.1_g000001 Rmu_sc0000853.1_g000010 Rmu_sc0000853.1_g000011 Rmu_sc0000936.1_g000009
rosa_roxburghii	Rroxscaffold_1G00011680
rosa_rugosa	Rorug05G0395900
rosa_samantha	Rh5AG452500 Rh5AG482500 Rh5BG471800 Rh5BG503600 Rh5CG494200
rosa_wichuraiana	Rw0G006080 Rw5G042280

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	2 cut(s)	310, 744
AciI	CCGC	1 cut(s)	119
AclI	AACGTT	1 cut(s)	572
AclWI	GGATC	2 cut(s)	359, 372
AcsI	RAATTY	1 cut(s)	521
AfaI	GTAC	3 cut(s)	307, 390, 775
AfiI	CCNNNNNNNGG	1 cut(s)	417
AgsI	TTSAA	1 cut(s)	598
AjnI	CCWGG	2 cut(s)	172, 481
AjuI	GAANNNNNNNTTGG	2 cut(s)	513, 545
AluBI	AGCT	4 cut(s)	236, 451, 492, 720
AluI	AGCT	4 cut(s)	236, 451, 492, 720
AlwI	GGATC	2 cut(s)	359, 372
AlwNI	CAGNNNCTG	1 cut(s)	437
ApeKI	GCWGC	1 cut(s)	236
ApoI	RAATTY	1 cut(s)	521
AspLEI	GCGC	1 cut(s)	312
AsuHPI	GGTGA	2 cut(s)	70, 545
BamHI	GGATCC	1 cut(s)	364
BanII	GRGCYC	1 cut(s)	292
BbvI	GCAGC	1 cut(s)	223
BccI	CCATC	1 cut(s)	736
BciT130I	CCWGG	2 cut(s)	174, 483
BfaI	CTAG	2 cut(s)	527, 695
BfmI	CTRYAG	1 cut(s)	237
BisI	GCNGC	1 cut(s)	237
BlsI	GCNGC	1 cut(s)	238
Bme1390I	CCNGG	2 cut(s)	174, 483
BmiI	GGNNCC	1 cut(s)	366
BmrFI	CCNGG	2 cut(s)	174, 483
BmsI	GCATC	2 cut(s)	10, 97
BpmI	CTGGAG	1 cut(s)	248
BsaJI	CCNNGG	2 cut(s)	313, 555
Bsc4I	CCNNNNNNNGG	1 cut(s)	417
Bse3DI	GCAATG	1 cut(s)	23
BseBI	CCWGG	2 cut(s)	174, 483
BseDI	CCNNGG	2 cut(s)	313, 555
BseGI	GGATG	5 cut(s)	25, 127, 544, 583, 776
BseLI	CCNNNNNNNGG	1 cut(s)	417
BseMI	GCAATG	1 cut(s)	23
BseXI	GCAGC	1 cut(s)	223
Bsh1236I	CGCG	2 cut(s)	310, 744
BslI	CCNNNNNNNGG	1 cut(s)	417
Bsp1286I	GDGCHC	1 cut(s)	292
Bsp1407I	TGTACA	1 cut(s)	773
Bsp143I	GATC	1 cut(s)	364
Bsp19I	CCATGG	1 cut(s)	313
BspACI	CCGC	1 cut(s)	119
BspFNI	CGCG	2 cut(s)	310, 744
BspHI	TCATGA	1 cut(s)	517
BspLI	GGNNCC	1 cut(s)	366
BspMAI	CTGCAG	1 cut(s)	241
BspPI	GGATC	2 cut(s)	359, 372
BsrDI	GCAATG	1 cut(s)	23
BsrGI	TGTACA	1 cut(s)	773
BssECI	CCNNGG	2 cut(s)	313, 555
BssMI	GATC	1 cut(s)	364
BssT1I	CCWWGG	2 cut(s)	313, 555
Bst2UI	CCWGG	2 cut(s)	174, 483
Bst4CI	ACNGT	1 cut(s)	509
Bst6I	CTCTTC	1 cut(s)	645
BstAUI	TGTACA	1 cut(s)	773
BstC8I	GCNNGC	1 cut(s)	193
BstDSI	CCRYGG	1 cut(s)	313
BstF5I	GGATG	5 cut(s)	25, 127, 544, 583, 776
BstFNI	CGCG	2 cut(s)	310, 744
BstHHI	GCGC	1 cut(s)	312
BstKTI	GATC	1 cut(s)	367
BstMBI	GATC	1 cut(s)	364
BstMWI	GCNNNNNNNGC	1 cut(s)	116
BstNI	CCWGG	2 cut(s)	174, 483
BstNSI	RCATGY	2 cut(s)	306, 671
BstSCI	CCNGG	2 cut(s)	172, 481
BstSFI	CTRYAG	1 cut(s)	237
BstUI	CGCG	2 cut(s)	310, 744
BstV1I	GCAGC	1 cut(s)	223
BstX2I	RGATCY	1 cut(s)	364
BstYI	RGATCY	1 cut(s)	364
BtgI	CCRYGG	1 cut(s)	313
BtgZI	GCGATG	1 cut(s)	120
BtsCI	GGATG	5 cut(s)	25, 127, 544, 583, 776
Cac8I	GCNNGC	1 cut(s)	193
CaiI	CAGNNNCTG	1 cut(s)	437
CciI	TCATGA	1 cut(s)	517
CfoI	GCGC	1 cut(s)	312
CsiI	ACCWGGT	1 cut(s)	481
Csp6I	GTAC	3 cut(s)	306, 389, 774
CviAII	CATG	8 cut(s)	5, 196, 303, 314, 454, 518, 658, 668
CviQI	GTAC	3 cut(s)	306, 389, 774
DpnI	GATC	1 cut(s)	366
DpnII	GATC	1 cut(s)	364
Eam1104I	CTCTTC	1 cut(s)	645
EarI	CTCTTC	1 cut(s)	645
EciI	GGCGGA	1 cut(s)	134
Eco130I	CCWWGG	2 cut(s)	313, 555
Eco24I	GRGCYC	1 cut(s)	292
Eco32I	GATATC	1 cut(s)	562
EcoRII	CCWGG	2 cut(s)	172, 481
EcoRV	GATATC	1 cut(s)	562
EcoT14I	CCWWGG	2 cut(s)	313, 555
EcoT22I	ATGCAT	2 cut(s)	6, 25
EcoT38I	GRGCYC	1 cut(s)	292
ErhI	CCWWGG	2 cut(s)	313, 555
FaeI	CATG	8 cut(s)	8, 199, 306, 317, 457, 521, 661, 671
FatI	CATG	8 cut(s)	4, 195, 302, 313, 453, 517, 657, 667
Fnu4HI	GCNGC	1 cut(s)	237
FokI	GGATG	5 cut(s)	32, 134, 531, 590, 783
FriOI	GRGCYC	1 cut(s)	292
Fsp4HI	GCNGC	1 cut(s)	237
FspBI	CTAG	2 cut(s)	527, 695
GlaI	GCGC	1 cut(s)	311
GluI	GCNGC	1 cut(s)	237
GsuI	CTGGAG	1 cut(s)	248
HhaI	GCGC	1 cut(s)	312
Hin1II	CATG	8 cut(s)	8, 199, 306, 317, 457, 521, 661, 671
Hin6I	GCGC	1 cut(s)	310
HinP1I	GCGC	1 cut(s)	310
HincII	GTYRAC	1 cut(s)	202
HindII	GTYRAC	1 cut(s)	202
HinfI	GANTC	2 cut(s)	461, 754
HphI	GGTGA	2 cut(s)	70, 545
Hpy166II	GTNNAC	1 cut(s)	202
Hpy188I	TCNGA	1 cut(s)	608
Hpy188III	TCNNGA	3 cut(s)	227, 465, 518
Hpy8I	GTNNAC	1 cut(s)	202
HpyAV	CCTTC	3 cut(s)	285, 331, 655
HpyCH4III	ACNGT	1 cut(s)	509
HpyCH4IV	ACGT	1 cut(s)	572
HpyCH4V	TGCA	8 cut(s)	4, 23, 28, 110, 195, 239, 326, 637
HpyF10VI	GCNNNNNNNGC	1 cut(s)	116
HpySE526I	ACGT	1 cut(s)	572
Hsp92II	CATG	8 cut(s)	8, 199, 306, 317, 457, 521, 661, 671
HspAI	GCGC	1 cut(s)	310
Kzo9I	GATC	1 cut(s)	364
LmnI	GCTCC	2 cut(s)	151, 725
Lsp1109I	GCAGC	1 cut(s)	223
LweI	GCATC	2 cut(s)	10, 97
MabI	ACCWGGT	1 cut(s)	481
MaeI	CTAG	2 cut(s)	527, 695
MaeII	ACGT	1 cut(s)	572
MaeIII	GTNAC	2 cut(s)	73, 624
MalI	GATC	1 cut(s)	366
MboI	GATC	1 cut(s)	364
MboII	GAAGA	5 cut(s)	141, 662, 671, 749, 763
MflI	RGATCY	1 cut(s)	364
MhlI	GDGCHC	1 cut(s)	292
MluCI	AATT	5 cut(s)	261, 521, 638, 675, 738
MmeI	TCCRAC	1 cut(s)	555
MnlI	CCTC	6 cut(s)	9, 49, 118, 223, 640, 646
Mph1103I	ATGCAT	2 cut(s)	6, 25
MseI	TTAA	1 cut(s)	443
MslI	CAYNNNNRTG	1 cut(s)	318
MspR9I	CCNGG	2 cut(s)	174, 483
MvaI	CCWGG	2 cut(s)	174, 483
MvnI	CGCG	2 cut(s)	310, 744
MwoI	GCNNNNNNNGC	1 cut(s)	116
NcoI	CCATGG	1 cut(s)	313
NdeII	GATC	1 cut(s)	364
NlaIII	CATG	8 cut(s)	8, 199, 306, 317, 457, 521, 661, 671
NlaIV	GGNNCC	1 cut(s)	366
NmuCI	GTSAC	2 cut(s)	73, 624
NsiI	ATGCAT	2 cut(s)	6, 25
NspI	RCATGY	2 cut(s)	306, 671
PagI	TCATGA	1 cut(s)	517
PfeI	GAWTC	2 cut(s)	461, 754
PkrI	GCNGC	1 cut(s)	238
Psp1406I	AACGTT	1 cut(s)	572
Psp6I	CCWGG	2 cut(s)	172, 481
PspGI	CCWGG	2 cut(s)	172, 481
PspN4I	GGNNCC	1 cut(s)	366
PstI	CTGCAG	1 cut(s)	241
PstNI	CAGNNNCTG	1 cut(s)	437
PsuI	RGATCY	1 cut(s)	364
RsaI	GTAC	3 cut(s)	307, 390, 775
RsaNI	GTAC	3 cut(s)	306, 389, 774
RseI	CAYNNNNRTG	1 cut(s)	318
SaqAI	TTAA	1 cut(s)	443
SatI	GCNGC	1 cut(s)	237
Sau3AI	GATC	1 cut(s)	364
ScrFI	CCNGG	2 cut(s)	174, 483
SduI	GDGCHC	1 cut(s)	292
SexAI	ACCWGGT	1 cut(s)	481
SfaNI	GCATC	2 cut(s)	10, 97
SfcI	CTRYAG	1 cut(s)	237
SmiMI	CAYNNNNRTG	1 cut(s)	318
Sse9I	AATT	5 cut(s)	261, 521, 638, 675, 738
SsiI	CCGC	1 cut(s)	119
SspMI	CTAG	2 cut(s)	527, 695
StyD4I	CCNGG	2 cut(s)	172, 481
StyI	CCWWGG	2 cut(s)	313, 555
TaaI	ACNGT	1 cut(s)	509
TaiI	ACGT	1 cut(s)	575
TaqI	TCGA	2 cut(s)	357, 498
TasI	AATT	5 cut(s)	261, 521, 638, 675, 738
TatI	WGTACW	2 cut(s)	388, 773
TfiI	GAWTC	2 cut(s)	461, 754
Tru1I	TTAA	1 cut(s)	443
Tru9I	TTAA	1 cut(s)	443
TseFI	GTSAC	2 cut(s)	73, 624
TseI	GCWGC	1 cut(s)	236
Tsp45I	GTSAC	2 cut(s)	73, 624
TspDTI	ATGAA	4 cut(s)	506, 534, 671, 674
XapI	RAATTY	1 cut(s)	521
XceI	RCATGY	2 cut(s)	306, 671
XspI	CTAG	2 cut(s)	527, 695
Zsp2I	ATGCAT	2 cut(s)	6, 25

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.