Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5B

Orthogroup ID

OG0006627

Physical Location & Seq

Genomic Coordinates Forward (+)

75103374 .. 75105590

Gene Structure 2217 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5BG471800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2217 bp

ATGGCAACTCTAGGCACCCCAGTTATCTCTTTCCCACGTCATCCCACCACTCCCTCCCCAACCGTCAATAACGACCTTCGCTTCCCAACCCAACCGCTTCTCCCAGTGATAGAACAATGCACCACCATCAACCAGCTCAAGCAAGTCCATGCCCAAATGCTCAAAACAGCCCTATTCTTTGACCCTTATTCCGCTAGTAAGCTGATCACAGCTGCTGCTCTCTCCTCCTTCTCGAGCGTCGACTATGCACGCCAAGTGTTCGACGAAATTCCTGACCCAAATCTGTTCACTTGGAACGCCCTCATTCGCGCGTACGCCTCCAGCCCCGACCCAGTTGAAAGCATTCTCCTATTTCTGCAGATGCTCGACGAGTGTGATGAGTGCCCCAATAAGTTTACTTTCCCTTTTTTGCTCAAGGCCGCCTCGGAGCTCCGGGCTTCCAAGGTTGGGAGAGGTTTTCATGCCATGGTGATAAAAGCCCAGCTGGGTTCGGATGTTTACATTGTTAATTCGCTCATTCACTTTTATGGGTCGTGCGGGGATTTGGATTTGGCGCGTTTGGTGTTTTTGAAGACTTATAAGAAGGATGTTGTTACTTGGAATTCTGTTATCACGGCTTTCGCTCAGGGGAACTGTCCCGAGGTGGCGTTGGAGTTGTTTAAGGAAATGGAGGCGGAGAATATGAAGCCGAATGCTGTCACCATGGTTAGTGTCTTGTCAGCTTGCGCAAAGAAGGCGGATTTGGAGTTTGGGAGGTGGGTTTGTTTGAATGTTGAAAGGCATGGAGTTGAAGAGAACTTGACTTTGAATAATGCTATGTTAGATATGTATGTGAAATGTGGGAGTGTTGAAGATGCAGAGAGATTGTTTGGAAGGATGCCGGAGAAGGACGTTGTGTCATGGACTACTATGCTTGATGGGTATGCTCGGATGGGGAAATATGATGAGGCTAGGTGTGTTTTTGCTGCCATGCCTAGTCAGGATATTGCTGCGTGGAATGTCCTCATTTCATCTTATGAACAGAATGGCAGGCCGAAAGAGGCTTTAGCTGTCTTCCATGAGTTGCAGAAGAACAAGGGTCCCAAGCCTGATGAGGTTACTCTAGTTAGTACTCTGGCAGCGTGTGCTCAATTGGGAGCGATTGATCTTGGCGGCTGGATACATGTTTACGTAAAGAAGCAGGGAATGAAGTTGAATTGTCACCTCACAACCTCGCTTATCGACATGTATGCAAAATGCGGAAATCTAGAGAAGGCACTTGAGGTTTTTAATTCGGTGGAGATGAGAGACGTATTTGTCTGGAGCGCCATGATTGCTGCTTTGGCAATGCATGGTCAGGGAAGGGATGCATTGCACTTTTTCTCAAAAATGCTAGAAGCTAAGGTGAAGCCAAATGCTGTGACATTTACTAACATATTATGCGCATGTAGCCACGCAGGATTGGTGGATGAGGGAAGAATATTTTTCTATCAAATGGAGCGAGTTTATGGAGTTGTGCCTGGAATAAAGCACTATGCGTGCATGGTTGACATTCTTGGTCGTTCAGGTAATCTGGAGGAAGCTGCAGAACTGATAGAAAAAATGCCAATTTCTCCCACTCCTTCTGTATGGGGGGCTCTGCTTGGTGCATGTACGCGCCATGGGAATGTTGCACTTGCTGAAAAGGCTTGTAGCCATTTGCTCGACTTGGATCCCAGAAATCATGGAGCCTATGTACTCTTATCAAATATATATGCCAAAACAGGGAAATGGGAAGCAGTTTCTGGGTTAAGGAAGCTCATGCGAGATTCTGGAATAAAGAAAGAACCTGGTTGTAGCTCAATTGAAATCAACGGTAGTGTTCATGAATTTCTAGTTGGTGATAATACTCATCCTTTATCCAAAGATATCTACTCAAAGTTGGATGAGATAGCAGGGAGATTGAAATCAATCGGATATGTGCCAAACAAGTCACACCTACTGCAATTTGTTGAGGAAGAGGACATGAAGGAACAGGCCCTAATTCTTCATAGTGAGAAACTAGCGATTGCCTTTGGACTTATTAGCTCCAAGCAATCTCAATCAATTCGCGTTGTGAAGAATCTTCGTGTTTGTGGAGACTGCCACTCAGTTGCTAAGCTTATATCGAAGCTTTATAATAGGGAGATTTTTCTGAGAGATCGATATCGGTTTCATCATTTTAGAGAGGGGCATTGTTCATGTAATGATTACTGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006139 GO:0006396 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009507 GO:0009536 GO:0009987 GO:0010467 GO:0016070 GO:0016787 GO:0016788 GO:0031425 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DYW_deaminase PPR

Protein Analysis

738

Amino Acids

82.24

Weight (kDa)

6.65

Isoelectric Point (pI)

43.36

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPR_2	PF13041	195 - 244	7.9e-12	PPR repeat family
PPR	PF01535	198 - 227	1.7e-06	PPR repeat
PPR	PF01535	299 - 327	4.9e-06	PPR repeat
PPR_2	PF13041	328 - 376	4.5e-08	PPR repeat family
PPR	PF01535	331 - 358	4.5e-06	PPR repeat
PPR_2	PF13041	429 - 477	4e-10	PPR repeat family
E_motif	PF20431	547 - 609	3.5e-22	E motif
Eplus_motif	PF20430	614 - 640	6.2e-08	E+ motif
DYW_deaminase	PF14432	645 - 738	1.8e-36	DYW family of nucleic acid deaminases

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006627)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G29760
fragaria_vesca	FvH4_3g38420
malus_domestica	MD03G1072100.v1.1 MD11G1076100.v1.1 MD11G1076300.v1.1 MD11G1076700.v1.1
prunus_persica	Prupe.6G058800_v2.0.a1
pyrus_communis	pycom03g05830 pycom12g05280
rosa_chinensis	RchiOBHm_Chr5g0069041 RchiOBHm_Chr5g0069081
rosa_laevigata	RLG00000017743 RLG00000036033
rosa_multiflora	Rmu_co8508453.1_g000001 Rmu_sc0000853.1_g000010 Rmu_sc0000853.1_g000011 Rmu_sc0000936.1_g000009
rosa_roxburghii	Rroxscaffold_1G00011680
rosa_rugosa	Rorug05G0395900
rosa_samantha	Rh5AG452500 Rh5AG482500 Rh5BG471800 Rh5BG503600 Rh5CG494200
rosa_wichuraiana	Rw0G006080 Rw5G042280

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	579, 2136
AasI	GACNNNNNNGTC	1 cut(s)	1295
Acc16I	TGCGCA	2 cut(s)	727, 1423
AccB1I	GGYRCC	1 cut(s)	14
AccI	GTMKAC	1 cut(s)	240
AccII	CGCG	5 cut(s)	309, 311, 556, 1636, 2070
AciI	CCGC	8 cut(s)	95, 192, 420, 537, 674, 737, 1152, 1239
AclWI	GGATC	2 cut(s)	1685, 1698
AcsI	RAATTY	3 cut(s)	267, 601, 1847
AfaI	GTAC	4 cut(s)	314, 1111, 1633, 1716
AfiI	CCNNNNNNNGG	2 cut(s)	447, 1743
AflIII	ACRYGT	2 cut(s)	1162, 1224
AhdI	GACNNNNNGTC	1 cut(s)	895
AjiI	CACGTC	1 cut(s)	38
AjnI	CCWGG	2 cut(s)	1498, 1807
AjuI	GAANNNNNNNTTGG	4 cut(s)	725, 757, 1839, 1871
Alw21I	GWGCWC	2 cut(s)	432, 1129
Alw26I	GTCTC	2 cut(s)	1281, 2091
AlwI	GGATC	2 cut(s)	1685, 1698
AlwNI	CAGNNNCTG	2 cut(s)	215, 1763
Ama87I	CYCGRG	2 cut(s)	232, 638
AoxI	GGCC	3 cut(s)	417, 1031, 1995
ApeKI	GCWGC	7 cut(s)	212, 215, 965, 989, 1118, 1316, 1562
ApoI	RAATTY	3 cut(s)	267, 601, 1847
Asp700I	GAANNNNTTC	1 cut(s)	342
AspLEI	GCGC	6 cut(s)	311, 556, 728, 1307, 1424, 1638
AspS9I	GGNCC	2 cut(s)	1079, 1996
AsuC2I	CCSGG	1 cut(s)	434
AsuHPI	GGTGA	5 cut(s)	481, 691, 1193, 1396, 1871
AvaI	CYCGRG	2 cut(s)	232, 638
AvaII	GGWCC	1 cut(s)	1079
BaeGI	GKGCMC	1 cut(s)	386
BamHI	GGATCC	1 cut(s)	1690
BanI	GGYRCC	1 cut(s)	14
BanII	GRGCYC	2 cut(s)	432, 1618
BbsI	GAAGAC	2 cut(s)	578, 1045
Bbv12I	GWGCWC	2 cut(s)	432, 1129
BbvI	GCAGC	7 cut(s)	199, 202, 952, 976, 1130, 1303, 1549
BccI	CCATC	3 cut(s)	134, 911, 925
BceAI	ACGGC	1 cut(s)	630
BcgI	CGANNNNNNTGC	2 cut(s)	1211, 1245
BciT130I	CCWGG	2 cut(s)	1500, 1809
BciVI	GTATCC	1 cut(s)	1152
BclI	TGATCA	1 cut(s)	204
BcnI	CCSGG	1 cut(s)	434
BcoDI	GTCTC	2 cut(s)	1281, 2091
BfaI	CTAG	9 cut(s)	11, 195, 951, 975, 1103, 1247, 1373, 1853, 2021
BfmI	CTRYAG	2 cut(s)	356, 1563
BfoI	RGCGCY	1 cut(s)	1308
BfuI	GTATCC	1 cut(s)	1152
BisI	GCNGC	9 cut(s)	213, 216, 420, 966, 990, 1119, 1153, 1317, 1563
BlpI	GCTNAGC	1 cut(s)	2115
BlsI	GCNGC	9 cut(s)	214, 217, 421, 967, 991, 1120, 1154, 1318, 1564
BmcAI	AGTACT	1 cut(s)	1111
Bme1390I	CCNGG	3 cut(s)	434, 1500, 1809
Bme18I	GGWCC	1 cut(s)	1079
BmeRI	GACNNNNNGTC	1 cut(s)	895
BmeT110I	CYCGRG	2 cut(s)	232, 638
BmgBI	CACGTC	1 cut(s)	38
BmgT120I	GGNCC	2 cut(s)	1079, 1996
BmiI	GGNNCC	5 cut(s)	16, 1080, 1081, 1692, 1708
BmrFI	CCNGG	3 cut(s)	434, 1500, 1809
BmrI	ACTGGG	3 cut(s)	14, 98, 326
BmsI	GCATC	4 cut(s)	351, 844, 867, 1336
BmuI	ACTGGG	3 cut(s)	14, 98, 326
BpiI	GAAGAC	2 cut(s)	578, 1045
BpmI	CTGGAG	3 cut(s)	304, 1321, 1574
Bpu10I	CCTNAGC	2 cut(s)	624, 1380
Bpu1102I	GCTNAGC	1 cut(s)	2115
BpuEI	CTTGAG	3 cut(s)	122, 398, 1280
BpuMI	CCSGG	1 cut(s)	434
Bsa29I	ATCGAT	1 cut(s)	2161
BsaAI	YACGTR	1 cut(s)	1171
BsaBI	GATNNNNATC	2 cut(s)	1924, 2163
BsaJI	CCNNGG	6 cut(s)	423, 441, 465, 639, 702, 1639
BsaXI	ACNNNNNCTCC	4 cut(s)	84, 114, 1698, 1728
Bsc4I	CCNNNNNNNGG	2 cut(s)	447, 1743
Bse1I	ACTGG	4 cut(s)	20, 104, 332, 2216
Bse3DI	GCAATG	2 cut(s)	1332, 1349
Bse8I	GATNNNNATC	2 cut(s)	1924, 2163
BseBI	CCWGG	2 cut(s)	1500, 1809
BseCI	ATCGAT	1 cut(s)	2161
BseDI	CCNNGG	6 cut(s)	423, 441, 465, 639, 702, 1639
BseGI	GGATG	9 cut(s)	40, 499, 592, 882, 936, 1351, 1453, 1870, 1909
BseJI	GATNNNNATC	2 cut(s)	1924, 2163
BseLI	CCNNNNNNNGG	2 cut(s)	447, 1743
BseMI	GCAATG	2 cut(s)	1332, 1349
BseMII	CTCAG	3 cut(s)	638, 2121, 2144
BseNI	ACTGG	4 cut(s)	20, 104, 332, 2216
BseRI	GAGGAG	1 cut(s)	214
BseSI	GKGCMC	1 cut(s)	386
BseXI	GCAGC	7 cut(s)	199, 202, 952, 976, 1130, 1303, 1549
BseYI	CCCAGC	2 cut(s)	480, 484
Bsh1236I	CGCG	5 cut(s)	309, 311, 556, 1636, 2070
BshFI	GGCC	3 cut(s)	419, 1033, 1997
BshNI	GGYRCC	1 cut(s)	14
BshVI	ATCGAT	1 cut(s)	2161
BsiHKAI	GWGCWC	2 cut(s)	432, 1129
BsiHKCI	CYCGRG	2 cut(s)	232, 638
BsiSI	CCGG	2 cut(s)	433, 881
BsiWI	CGTACG	1 cut(s)	312
BslFI	GGGAC	2 cut(s)	621, 1065
BslI	CCNNNNNNNGG	2 cut(s)	447, 1743
BsmAI	GTCTC	2 cut(s)	1281, 2091
BsmBI	CGTCTC	1 cut(s)	1281
BsmFI	GGGAC	2 cut(s)	621, 1065
BsmI	GAATGC	2 cut(s)	342, 697
BsnI	GGCC	3 cut(s)	419, 1033, 1997
BsoBI	CYCGRG	2 cut(s)	232, 638
Bsp1286I	GDGCHC	4 cut(s)	386, 432, 1129, 1618
Bsp143I	GATC	4 cut(s)	204, 1144, 1690, 2158
Bsp1720I	GCTNAGC	1 cut(s)	2115
Bsp19I	CCATGG	3 cut(s)	465, 702, 1639
BspACI	CCGC	8 cut(s)	95, 192, 420, 537, 674, 737, 1152, 1239
BspANI	GGCC	3 cut(s)	419, 1033, 1997
BspCNI	CTCAG	3 cut(s)	637, 2120, 2145
BspDI	ATCGAT	1 cut(s)	2161
BspFNI	CGCG	5 cut(s)	309, 311, 556, 1636, 2070
BspHI	TCATGA	1 cut(s)	1843
BspLI	GGNNCC	5 cut(s)	16, 1080, 1081, 1692, 1708
BspMAI	CTGCAG	2 cut(s)	360, 1567
BspPI	GGATC	2 cut(s)	1685, 1698
BspT107I	GGYRCC	1 cut(s)	14
BsrDI	GCAATG	2 cut(s)	1332, 1349
BsrI	ACTGG	4 cut(s)	20, 104, 332, 2216
BssECI	CCNNGG	6 cut(s)	423, 441, 465, 639, 702, 1639
BssMI	GATC	4 cut(s)	204, 1144, 1690, 2158
BssT1I	CCWWGG	4 cut(s)	441, 465, 702, 1639
Bst2UI	CCWGG	2 cut(s)	1500, 1809
Bst4CI	ACNGT	3 cut(s)	64, 635, 1835
Bst6I	CTCTTC	2 cut(s)	786, 1971
BstAPI	GCANNNNNTGC	1 cut(s)	1124
BstBAI	YACGTR	1 cut(s)	1171
BstC8I	GCNNGC	4 cut(s)	250, 724, 1031, 1519
BstDEI	CTNAG	5 cut(s)	624, 1380, 2107, 2115, 2153
BstDSI	CCRYGG	3 cut(s)	465, 702, 1639
BstF5I	GGATG	9 cut(s)	40, 499, 592, 882, 936, 1351, 1453, 1870, 1909
BstFNI	CGCG	5 cut(s)	309, 311, 556, 1636, 2070
BstH2I	RGCGCY	1 cut(s)	1308
BstHHI	GCGC	6 cut(s)	311, 556, 728, 1307, 1424, 1638
BstKTI	GATC	4 cut(s)	207, 1147, 1693, 2161
BstMAI	GTCTC	2 cut(s)	1281, 2091
BstMBI	GATC	4 cut(s)	204, 1144, 1690, 2158
BstMWI	GCNNNNNNNGC	6 cut(s)	734, 1124, 1313, 1322, 1428, 1664
BstNI	CCWGG	2 cut(s)	1500, 1809
BstNSI	RCATGY	4 cut(s)	1166, 1228, 1428, 1632
BstSCI	CCNGG	3 cut(s)	432, 1498, 1807
BstSFI	CTRYAG	2 cut(s)	356, 1563
BstSLI	GKGCMC	1 cut(s)	386
BstSNI	TACGTA	1 cut(s)	1171
BstUI	CGCG	5 cut(s)	309, 311, 556, 1636, 2070
BstV1I	GCAGC	7 cut(s)	199, 202, 952, 976, 1130, 1303, 1549
BstV2I	GAAGAC	2 cut(s)	578, 1045
BstX2I	RGATCY	1 cut(s)	1690
BstYI	RGATCY	1 cut(s)	1690
Bsu15I	ATCGAT	1 cut(s)	2161
BsuI	GTATCC	1 cut(s)	1152
BsuRI	GGCC	3 cut(s)	419, 1033, 1997
BsuTUI	ATCGAT	1 cut(s)	2161
BtgI	CCRYGG	3 cut(s)	465, 702, 1639
BtrI	CACGTC	1 cut(s)	38
BtsCI	GGATG	9 cut(s)	40, 499, 592, 882, 936, 1351, 1453, 1870, 1909
BtsIMutI	CAGTG	1 cut(s)	111
Cac8I	GCNNGC	4 cut(s)	250, 724, 1031, 1519
CaiI	CAGNNNCTG	2 cut(s)	215, 1763
CciI	TCATGA	1 cut(s)	1843
CfoI	GCGC	6 cut(s)	311, 556, 728, 1307, 1424, 1638
Cfr13I	GGNCC	2 cut(s)	1079, 1996
ClaI	ATCGAT	1 cut(s)	2161
CseI	GACGC	1 cut(s)	226
CsiI	ACCWGGT	1 cut(s)	1807
Csp6I	GTAC	4 cut(s)	313, 1110, 1632, 1715
CviQI	GTAC	4 cut(s)	313, 1110, 1632, 1715
DdeI	CTNAG	5 cut(s)	624, 1380, 2107, 2115, 2153
DpnI	GATC	4 cut(s)	206, 1146, 1692, 2160
DpnII	GATC	4 cut(s)	204, 1144, 1690, 2158
DrdI	GACNNNNNNGTC	1 cut(s)	1295
DriI	GACNNNNNGTC	1 cut(s)	895
DseDI	GACNNNNNNGTC	1 cut(s)	1295
Eam1104I	CTCTTC	2 cut(s)	786, 1971
Eam1105I	GACNNNNNGTC	1 cut(s)	895
EarI	CTCTTC	2 cut(s)	786, 1971
EciI	GGCGGA	2 cut(s)	689, 752
Ecl136II	GAGCTC	1 cut(s)	430
Eco105I	TACGTA	1 cut(s)	1171
Eco130I	CCWWGG	4 cut(s)	441, 465, 702, 1639
Eco24I	GRGCYC	2 cut(s)	432, 1618
Eco32I	GATATC	2 cut(s)	1888, 2165
Eco47I	GGWCC	1 cut(s)	1079
Eco53kI	GAGCTC	1 cut(s)	430
Eco88I	CYCGRG	2 cut(s)	232, 638
EcoICRI	GAGCTC	1 cut(s)	430
EcoO109I	RGGNCCY	2 cut(s)	1079, 1996
EcoRI	GAATTC	1 cut(s)	601
EcoRII	CCWGG	2 cut(s)	1498, 1807
EcoRV	GATATC	2 cut(s)	1888, 2165
EcoT14I	CCWWGG	4 cut(s)	441, 465, 702, 1639
EcoT22I	ATGCAT	2 cut(s)	1332, 1351
EcoT38I	GRGCYC	2 cut(s)	432, 1618
ErhI	CCWWGG	4 cut(s)	441, 465, 702, 1639
Esp3I	CGTCTC	1 cut(s)	1281
FaqI	GGGAC	2 cut(s)	621, 1065
FauI	CCCGC	1 cut(s)	530
FbaI	TGATCA	1 cut(s)	204
FblI	GTMKAC	1 cut(s)	240
Fnu4HI	GCNGC	9 cut(s)	213, 216, 420, 966, 990, 1119, 1153, 1317, 1563
FokI	GGATG	9 cut(s)	27, 506, 599, 889, 943, 1358, 1460, 1857, 1916
FriOI	GRGCYC	2 cut(s)	432, 1618
Fsp4HI	GCNGC	9 cut(s)	213, 216, 420, 966, 990, 1119, 1153, 1317, 1563
FspAI	RTGCGCAY	1 cut(s)	1423
FspBI	CTAG	9 cut(s)	11, 195, 951, 975, 1103, 1247, 1373, 1853, 2021
FspI	TGCGCA	2 cut(s)	727, 1423
GlaI	GCGC	6 cut(s)	310, 555, 727, 1306, 1423, 1637
GluI	GCNGC	9 cut(s)	213, 216, 420, 966, 990, 1119, 1153, 1317, 1563
GsaI	CCCAGC	2 cut(s)	484, 488
GsuI	CTGGAG	3 cut(s)	304, 1321, 1574
HaeII	RGCGCY	1 cut(s)	1308
HaeIII	GGCC	3 cut(s)	419, 1033, 1997
HapII	CCGG	2 cut(s)	433, 881
HgaI	GACGC	1 cut(s)	226
HhaI	GCGC	6 cut(s)	311, 556, 728, 1307, 1424, 1638
Hin6I	GCGC	6 cut(s)	309, 554, 726, 1305, 1422, 1636
HinP1I	GCGC	6 cut(s)	309, 554, 726, 1305, 1422, 1636
HincII	GTYRAC	2 cut(s)	241, 1528
HindII	GTYRAC	2 cut(s)	241, 1528
HindIII	AAGCTT	2 cut(s)	2117, 2129
HinfI	GANTC	2 cut(s)	1787, 2080
HpaII	CCGG	2 cut(s)	433, 881
HphI	GGTGA	5 cut(s)	481, 691, 1193, 1396, 1871
Hpy166II	GTNNAC	6 cut(s)	241, 288, 396, 499, 1168, 1528
Hpy188I	TCNGA	5 cut(s)	427, 493, 930, 1934, 2154
Hpy188III	TCNNGA	9 cut(s)	232, 272, 638, 980, 1247, 1300, 1553, 1791, 1844
Hpy8I	GTNNAC	6 cut(s)	241, 288, 396, 499, 1168, 1528
Hpy99I	CGWCG	3 cut(s)	242, 266, 371
HpyCH4III	ACNGT	3 cut(s)	64, 635, 1835
HpyCH4IV	ACGT	4 cut(s)	37, 891, 1170, 1290
HpyF10VI	GCNNNNNNNGC	6 cut(s)	734, 1124, 1313, 1322, 1428, 1664
HpyF3I	CTNAG	5 cut(s)	624, 1380, 2107, 2115, 2153
HpySE526I	ACGT	4 cut(s)	37, 891, 1170, 1290
HspAI	GCGC	6 cut(s)	309, 554, 726, 1305, 1422, 1636
KflI	GGGWCCC	1 cut(s)	1079
Ksp22I	TGATCA	1 cut(s)	204
Kzo9I	GATC	4 cut(s)	204, 1144, 1690, 2158
LmnI	GCTCC	7 cut(s)	427, 435, 1136, 1302, 1477, 1706, 2051
Lsp1109I	GCAGC	7 cut(s)	199, 202, 952, 976, 1130, 1303, 1549
LweI	GCATC	4 cut(s)	351, 844, 867, 1336
MabI	ACCWGGT	1 cut(s)	1807
MaeI	CTAG	9 cut(s)	11, 195, 951, 975, 1103, 1247, 1373, 1853, 2021
MaeII	ACGT	4 cut(s)	37, 891, 1170, 1290
MaeIII	GTNAC	6 cut(s)	592, 697, 1096, 1199, 1399, 1950
MalI	GATC	4 cut(s)	206, 1146, 1692, 2160
MboI	GATC	4 cut(s)	204, 1144, 1690, 2158
MfeI	CAATTG	2 cut(s)	1130, 1821
MflI	RGATCY	1 cut(s)	1690
MhlI	GDGCHC	4 cut(s)	386, 432, 1129, 1618
MmeI	TCCRAC	2 cut(s)	630, 1881
Mph1103I	ATGCAT	2 cut(s)	1332, 1351
MroXI	GAANNNNTTC	1 cut(s)	342
MseI	TTAA	4 cut(s)	507, 660, 1269, 1769
MslI	CAYNNNNRTG	2 cut(s)	525, 1644
MspA1I	CMGCKG	2 cut(s)	212, 484
MspI	CCGG	2 cut(s)	433, 881
MspR9I	CCNGG	3 cut(s)	434, 1500, 1809
MunI	CAATTG	2 cut(s)	1130, 1821
Mva1269I	GAATGC	2 cut(s)	342, 697
MvaI	CCWGG	2 cut(s)	1500, 1809
MvnI	CGCG	5 cut(s)	309, 311, 556, 1636, 2070
MwoI	GCNNNNNNNGC	6 cut(s)	734, 1124, 1313, 1322, 1428, 1664
NciI	CCSGG	1 cut(s)	434
NcoI	CCATGG	3 cut(s)	465, 702, 1639
NdeII	GATC	4 cut(s)	204, 1144, 1690, 2158
NlaIV	GGNNCC	5 cut(s)	16, 1080, 1081, 1692, 1708
NmuCI	GTSAC	4 cut(s)	697, 1199, 1399, 1950
NsbI	TGCGCA	2 cut(s)	727, 1423
NsiI	ATGCAT	2 cut(s)	1332, 1351
NspI	RCATGY	4 cut(s)	1166, 1228, 1428, 1632
PaeR7I	CTCGAG	1 cut(s)	232
PagI	TCATGA	1 cut(s)	1843
PciI	ACATGT	2 cut(s)	1162, 1224
PctI	GAATGC	2 cut(s)	342, 697
PdmI	GAANNNNTTC	1 cut(s)	342
PfeI	GAWTC	2 cut(s)	1787, 2080
Pfl23II	CGTACG	1 cut(s)	312
PkrI	GCNGC	9 cut(s)	214, 217, 421, 967, 991, 1120, 1154, 1318, 1564
Ppu21I	YACGTR	1 cut(s)	1171
PpuMI	RGGWCCY	1 cut(s)	1079
PscI	ACATGT	2 cut(s)	1162, 1224
PsiI	TTATAA	2 cut(s)	579, 2136
Psp124BI	GAGCTC	1 cut(s)	432
Psp5II	RGGWCCY	1 cut(s)	1079
Psp6I	CCWGG	2 cut(s)	1498, 1807
PspFI	CCCAGC	2 cut(s)	480, 484
PspGI	CCWGG	2 cut(s)	1498, 1807
PspLI	CGTACG	1 cut(s)	312
PspN4I	GGNNCC	5 cut(s)	16, 1080, 1081, 1692, 1708
PspPI	GGNCC	2 cut(s)	1079, 1996
PspPPI	RGGWCCY	1 cut(s)	1079
PstI	CTGCAG	2 cut(s)	360, 1567
PstNI	CAGNNNCTG	2 cut(s)	215, 1763
PsuI	RGATCY	1 cut(s)	1690
PvuII	CAGCTG	2 cut(s)	212, 484
RsaI	GTAC	4 cut(s)	314, 1111, 1633, 1716
RsaNI	GTAC	4 cut(s)	313, 1110, 1632, 1715
RseI	CAYNNNNRTG	2 cut(s)	525, 1644
SacI	GAGCTC	1 cut(s)	432
SalI	GTCGAC	1 cut(s)	239
SaqAI	TTAA	4 cut(s)	507, 660, 1269, 1769
SatI	GCNGC	9 cut(s)	213, 216, 420, 966, 990, 1119, 1153, 1317, 1563
Sau3AI	GATC	4 cut(s)	204, 1144, 1690, 2158
Sau96I	GGNCC	2 cut(s)	1079, 1996
ScaI	AGTACT	1 cut(s)	1111
ScrFI	CCNGG	3 cut(s)	434, 1500, 1809
SduI	GDGCHC	4 cut(s)	386, 432, 1129, 1618
SexAI	ACCWGGT	1 cut(s)	1807
SfaNI	GCATC	4 cut(s)	351, 844, 867, 1336
SfcI	CTRYAG	2 cut(s)	356, 1563
Sfr274I	CTCGAG	1 cut(s)	232
SinI	GGWCC	1 cut(s)	1079
SlaI	CTCGAG	1 cut(s)	232
SmiMI	CAYNNNNRTG	2 cut(s)	525, 1644
SmlI	CTYRAG	4 cut(s)	137, 232, 413, 1259
SmoI	CTYRAG	4 cut(s)	137, 232, 413, 1259
SnaBI	TACGTA	1 cut(s)	1171
SsiI	CCGC	8 cut(s)	95, 192, 420, 537, 674, 737, 1152, 1239
SspI	AATATT	1 cut(s)	1461
SspMI	CTAG	9 cut(s)	11, 195, 951, 975, 1103, 1247, 1373, 1853, 2021
SstI	GAGCTC	1 cut(s)	432
StyD4I	CCNGG	3 cut(s)	432, 1498, 1807
StyI	CCWWGG	4 cut(s)	441, 465, 702, 1639
TaaI	ACNGT	3 cut(s)	64, 635, 1835
TaiI	ACGT	4 cut(s)	40, 894, 1173, 1293
TaqI	TCGA	8 cut(s)	233, 240, 261, 366, 1221, 1683, 2126, 2161
TatI	WGTACW	2 cut(s)	1109, 1714
TauI	GCSGC	2 cut(s)	422, 1155
TfiI	GAWTC	2 cut(s)	1787, 2080
Tru1I	TTAA	4 cut(s)	507, 660, 1269, 1769
Tru9I	TTAA	4 cut(s)	507, 660, 1269, 1769
TscAI	CASTG	1 cut(s)	111
TseFI	GTSAC	4 cut(s)	697, 1199, 1399, 1950
TseI	GCWGC	7 cut(s)	212, 215, 965, 989, 1118, 1316, 1562
Tsp45I	GTSAC	4 cut(s)	697, 1199, 1399, 1950
TspRI	CASTG	1 cut(s)	111
VpaK11BI	GGWCC	1 cut(s)	1079
XapI	RAATTY	3 cut(s)	267, 601, 1847
XbaI	TCTAGA	1 cut(s)	1246
XceI	RCATGY	4 cut(s)	1166, 1228, 1428, 1632
XhoI	CTCGAG	1 cut(s)	232
XmiI	GTMKAC	1 cut(s)	240
XmnI	GAANNNNTTC	1 cut(s)	342
XspI	CTAG	9 cut(s)	11, 195, 951, 975, 1103, 1247, 1373, 1853, 2021
ZrmI	AGTACT	1 cut(s)	1111
Zsp2I	ATGCAT	2 cut(s)	1332, 1351

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.