Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr11

Orthogroup ID

OG0006627

Physical Location & Seq

Genomic Coordinates Reverse (-)

6474538 .. 6475222

Gene Structure 685 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD11G1076100.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 636 bp

ATGCTCCGTACAGGCTTTTTCTTCGACCCCTACTCCGCCAGCAAGCTTATCACCGTCTGTGCCCTCTCCTCCTCCTCCAAGGTGAAGCCCAATTCCGTGACATTCACCAACGTGTTATGCGCTTGTAGCCACGCCAGATTGATGGAGCTAGTTTACGGGGTTGTGCCTGGTCTAAAGCACTATGCTTGCATGGTCGATATTTTAGGTCATTCTGGAAATCTGGAGGAAGTTGGGCTCTTCTTGGGGCCTATGGACTTCATTGGAATGTTGAACTTGCCGAAAAGGAGAGTAGCCCATATGCTTGAGTTGGATCCCAGTAACCACATAGCTTATGTACTCTTATCAAATATCTATGCCAAGACAGGGAAATGGGAAGAAGTTTCAGGGTTAAGGAAGCGTACGCGAGATGCGGGAATGAAGAAAGAACCGGTTTATAGTGCAACCGAAGTCAACAGTATTGTTCCTGAATTTATAGTTGGCGATAGCTCTCACCCTCTGTGCAAAGAAATATATTCAAAGTTGGATGAAATAGCAGGGAGATTGAAGTCAAATGGATACGTGCCAAACAAGTCACATCTACTGCAGTTTGTTGAGGAAGAAGACATGAAGGACCATACCCTAATCATTCACAACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006139 GO:0006396 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009507 GO:0009536 GO:0009987 GO:0010467 GO:0016070 GO:0016787 GO:0016788 GO:0031425 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DYW_deaminase PPR

Protein Analysis

212

Amino Acids

23.53

Weight (kDa)

7.11

Isoelectric Point (pI)

48.1

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
E_motif	PF20431	97 - 146	3.2e-13	E motif
Eplus_motif	PF20430	156 - 180	6.4e-07	E+ motif

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006627)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G29760
fragaria_vesca	FvH4_3g38420
malus_domestica	MD03G1072100.v1.1 MD11G1076100.v1.1 MD11G1076300.v1.1 MD11G1076700.v1.1
prunus_persica	Prupe.6G058800_v2.0.a1
pyrus_communis	pycom03g05830 pycom12g05280
rosa_chinensis	RchiOBHm_Chr5g0069041 RchiOBHm_Chr5g0069081
rosa_laevigata	RLG00000017743 RLG00000036033
rosa_multiflora	Rmu_co8508453.1_g000001 Rmu_sc0000853.1_g000010 Rmu_sc0000853.1_g000011 Rmu_sc0000936.1_g000009
rosa_roxburghii	Rroxscaffold_1G00011680
rosa_rugosa	Rorug05G0395900
rosa_samantha	Rh5AG452500 Rh5AG482500 Rh5BG471800 Rh5BG503600 Rh5CG494200
rosa_wichuraiana	Rw0G006080 Rw5G042280

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	403
AciI	CCGC	2 cut(s)	36, 410
AclWI	GGATC	2 cut(s)	305, 318
AcsI	RAATTY	1 cut(s)	467
AfaI	GTAC	3 cut(s)	10, 336, 400
AfiI	CCNNNNNNNGG	1 cut(s)	363
AflIII	ACRYGT	1 cut(s)	111
AgeI	ACCGGT	1 cut(s)	427
AgsI	TTSAA	3 cut(s)	271, 516, 544
AjnI	CCWGG	1 cut(s)	166
AjuI	GAANNNNNNNTTGG	2 cut(s)	459, 491
AleI	CACNNNNGTG	1 cut(s)	110
AluBI	AGCT	4 cut(s)	46, 148, 329, 486
AluI	AGCT	4 cut(s)	46, 148, 329, 486
AlwI	GGATC	2 cut(s)	305, 318
AoxI	GGCC	1 cut(s)	245
ApoI	RAATTY	1 cut(s)	467
AsiGI	ACCGGT	1 cut(s)	427
AspLEI	GCGC	1 cut(s)	122
AspS9I	GGNCC	2 cut(s)	245, 610
AsuHPI	GGTGA	4 cut(s)	43, 94, 97, 482
AvaII	GGWCC	1 cut(s)	610
BaeGI	GKGCMC	1 cut(s)	64
BamHI	GGATCC	1 cut(s)	310
BanII	GRGCYC	1 cut(s)	237
BbsI	GAAGAC	1 cut(s)	606
BccI	CCATC	1 cut(s)	136
BciT130I	CCWGG	1 cut(s)	168
BciVI	GTATCC	1 cut(s)	548
BfaI	CTAG	2 cut(s)	149, 634
BfmI	CTRYAG	1 cut(s)	581
BfuI	GTATCC	1 cut(s)	548
Bme1390I	CCNGG	1 cut(s)	168
Bme18I	GGWCC	1 cut(s)	610
BmgT120I	GGNCC	2 cut(s)	245, 610
BmiI	GGNNCC	2 cut(s)	246, 312
BmrFI	CCNGG	1 cut(s)	168
BmrI	ACTGGG	1 cut(s)	309
BmsI	GCATC	1 cut(s)	397
BmuI	ACTGGG	1 cut(s)	309
BpiI	GAAGAC	1 cut(s)	606
BpmI	CTGGAG	1 cut(s)	242
BpuEI	CTTGAG	1 cut(s)	323
BsaAI	YACGTR	1 cut(s)	559
BsaJI	CCNNGG	1 cut(s)	78
BsaWI	WCCGGW	1 cut(s)	427
BsaXI	ACNNNNNCTCC	2 cut(s)	17, 47
Bsc4I	CCNNNNNNNGG	1 cut(s)	363
Bse118I	RCCGGY	1 cut(s)	427
Bse1I	ACTGG	1 cut(s)	315
BseBI	CCWGG	1 cut(s)	168
BseDI	CCNNGG	1 cut(s)	78
BseGI	GGATG	1 cut(s)	529
BseLI	CCNNNNNNNGG	1 cut(s)	363
BseNI	ACTGG	1 cut(s)	315
BseRI	GAGGAG	3 cut(s)	58, 61, 64
BseSI	GKGCMC	1 cut(s)	64
Bsh1236I	CGCG	1 cut(s)	403
BshFI	GGCC	1 cut(s)	247
BshTI	ACCGGT	1 cut(s)	427
BsiSI	CCGG	1 cut(s)	428
BsiWI	CGTACG	1 cut(s)	398
BslI	CCNNNNNNNGG	1 cut(s)	363
BsnI	GGCC	1 cut(s)	247
Bsp1286I	GDGCHC	2 cut(s)	64, 237
Bsp143I	GATC	1 cut(s)	310
BspACI	CCGC	2 cut(s)	36, 410
BspANI	GGCC	1 cut(s)	247
BspFNI	CGCG	1 cut(s)	403
BspLI	GGNNCC	2 cut(s)	246, 312
BspMAI	CTGCAG	1 cut(s)	585
BspPI	GGATC	2 cut(s)	305, 318
BspQI	GCTCTTC	1 cut(s)	242
BsrFI	RCCGGY	1 cut(s)	427
BsrI	ACTGG	1 cut(s)	315
BssAI	RCCGGY	1 cut(s)	427
BssECI	CCNNGG	1 cut(s)	78
BssMI	GATC	1 cut(s)	310
BssT1I	CCWWGG	1 cut(s)	78
Bst2UI	CCWGG	1 cut(s)	168
Bst4CI	ACNGT	2 cut(s)	55, 455
Bst6I	CTCTTC	1 cut(s)	242
BstBAI	YACGTR	1 cut(s)	559
BstC8I	GCNNGC	3 cut(s)	40, 44, 187
BstF5I	GGATG	1 cut(s)	529
BstFNI	CGCG	1 cut(s)	403
BstHHI	GCGC	1 cut(s)	122
BstKTI	GATC	1 cut(s)	313
BstMBI	GATC	1 cut(s)	310
BstMWI	GCNNNNNNNGC	1 cut(s)	126
BstNI	CCWGG	1 cut(s)	168
BstSCI	CCNGG	1 cut(s)	166
BstSFI	CTRYAG	1 cut(s)	581
BstSLI	GKGCMC	1 cut(s)	64
BstUI	CGCG	1 cut(s)	403
BstV2I	GAAGAC	1 cut(s)	606
BstX2I	RGATCY	1 cut(s)	310
BstXI	CCANNNNNNTGG	1 cut(s)	142
BstYI	RGATCY	1 cut(s)	310
BsuI	GTATCC	1 cut(s)	548
BsuRI	GGCC	1 cut(s)	247
BtsCI	GGATG	1 cut(s)	529
Cac8I	GCNNGC	3 cut(s)	40, 44, 187
CfoI	GCGC	1 cut(s)	122
Cfr10I	RCCGGY	1 cut(s)	427
Cfr13I	GGNCC	2 cut(s)	245, 610
Csp6I	GTAC	3 cut(s)	9, 335, 399
CspAI	ACCGGT	1 cut(s)	427
CviAII	CATG	2 cut(s)	190, 604
CviQI	GTAC	3 cut(s)	9, 335, 399
DpnI	GATC	1 cut(s)	312
DpnII	GATC	1 cut(s)	310
Eam1104I	CTCTTC	1 cut(s)	242
EarI	CTCTTC	1 cut(s)	242
EciI	GGCGGA	1 cut(s)	25
Eco130I	CCWWGG	1 cut(s)	78
Eco24I	GRGCYC	1 cut(s)	237
Eco47I	GGWCC	1 cut(s)	610
EcoO109I	RGGNCCY	1 cut(s)	245
EcoRII	CCWGG	1 cut(s)	166
EcoT14I	CCWWGG	1 cut(s)	78
EcoT38I	GRGCYC	1 cut(s)	237
ErhI	CCWWGG	1 cut(s)	78
FaeI	CATG	2 cut(s)	193, 607
FatI	CATG	2 cut(s)	189, 603
FauI	CCCGC	1 cut(s)	403
FauNDI	CATATG	1 cut(s)	297
FokI	GGATG	1 cut(s)	536
FriOI	GRGCYC	1 cut(s)	237
FspBI	CTAG	2 cut(s)	149, 634
GlaI	GCGC	1 cut(s)	121
GsuI	CTGGAG	1 cut(s)	242
HaeIII	GGCC	1 cut(s)	247
HapII	CCGG	1 cut(s)	428
HhaI	GCGC	1 cut(s)	122
Hin1II	CATG	2 cut(s)	193, 607
Hin6I	GCGC	1 cut(s)	120
HinP1I	GCGC	1 cut(s)	120
HincII	GTYRAC	1 cut(s)	451
HindII	GTYRAC	1 cut(s)	451
HindIII	AAGCTT	1 cut(s)	44
HpaII	CCGG	1 cut(s)	428
HphI	GGTGA	4 cut(s)	43, 94, 97, 482
Hpy166II	GTNNAC	2 cut(s)	154, 451
Hpy188III	TCNNGA	3 cut(s)	213, 221, 464
Hpy8I	GTNNAC	2 cut(s)	154, 451
HpyAV	CCTTC	1 cut(s)	601
HpyCH4III	ACNGT	2 cut(s)	55, 455
HpyCH4IV	ACGT	2 cut(s)	111, 558
HpyCH4V	TGCA	4 cut(s)	189, 440, 501, 583
HpyF10VI	GCNNNNNNNGC	1 cut(s)	126
HpySE526I	ACGT	2 cut(s)	111, 558
Hsp92II	CATG	2 cut(s)	193, 607
HspAI	GCGC	1 cut(s)	120
Kzo9I	GATC	1 cut(s)	310
LguI	GCTCTTC	1 cut(s)	242
LmnI	GCTCC	2 cut(s)	9, 145
LweI	GCATC	1 cut(s)	397
MaeI	CTAG	2 cut(s)	149, 634
MaeII	ACGT	2 cut(s)	111, 558
MaeIII	GTNAC	3 cut(s)	97, 317, 570
MalI	GATC	1 cut(s)	312
MboI	GATC	1 cut(s)	310
MboII	GAAGA	6 cut(s)	13, 229, 386, 430, 608, 611
MflI	RGATCY	1 cut(s)	310
MhlI	GDGCHC	2 cut(s)	64, 237
MluCI	AATT	2 cut(s)	91, 467
MmeI	TCCRAC	2 cut(s)	288, 501
MnlI	CCTC	7 cut(s)	74, 79, 82, 85, 217, 504, 586
MseI	TTAA	1 cut(s)	389
MslI	CAYNNNNRTG	2 cut(s)	110, 263
MspI	CCGG	1 cut(s)	428
MspR9I	CCNGG	1 cut(s)	168
MvaI	CCWGG	1 cut(s)	168
MvnI	CGCG	1 cut(s)	403
MwoI	GCNNNNNNNGC	1 cut(s)	126
NdeI	CATATG	1 cut(s)	297
NdeII	GATC	1 cut(s)	310
NlaIII	CATG	2 cut(s)	193, 607
NlaIV	GGNNCC	2 cut(s)	246, 312
NmuCI	GTSAC	2 cut(s)	97, 570
OliI	CACNNNNGTG	1 cut(s)	110
PciSI	GCTCTTC	1 cut(s)	242
Pfl23II	CGTACG	1 cut(s)	398
PinAI	ACCGGT	1 cut(s)	427
Ppu21I	YACGTR	1 cut(s)	559
Psp6I	CCWGG	1 cut(s)	166
PspGI	CCWGG	1 cut(s)	166
PspLI	CGTACG	1 cut(s)	398
PspN4I	GGNNCC	2 cut(s)	246, 312
PspPI	GGNCC	2 cut(s)	245, 610
PstI	CTGCAG	1 cut(s)	585
PsuI	RGATCY	1 cut(s)	310
RsaI	GTAC	3 cut(s)	10, 336, 400
RsaNI	GTAC	3 cut(s)	9, 335, 399
RseI	CAYNNNNRTG	2 cut(s)	110, 263
SapI	GCTCTTC	1 cut(s)	242
SaqAI	TTAA	1 cut(s)	389
Sau3AI	GATC	1 cut(s)	310
Sau96I	GGNCC	2 cut(s)	245, 610
ScrFI	CCNGG	1 cut(s)	168
SduI	GDGCHC	2 cut(s)	64, 237
SetI	ASST	8 cut(s)	48, 84, 114, 150, 208, 331, 488, 561
SfaNI	GCATC	1 cut(s)	397
SfcI	CTRYAG	1 cut(s)	581
SinI	GGWCC	1 cut(s)	610
SmiMI	CAYNNNNRTG	2 cut(s)	110, 263
SmlI	CTYRAG	1 cut(s)	302
SmoI	CTYRAG	1 cut(s)	302
Sse9I	AATT	2 cut(s)	91, 467
SsiI	CCGC	2 cut(s)	36, 410
SspMI	CTAG	2 cut(s)	149, 634
StyD4I	CCNGG	1 cut(s)	166
StyI	CCWWGG	1 cut(s)	78
TaaI	ACNGT	2 cut(s)	55, 455
TaiI	ACGT	2 cut(s)	114, 561
TaqI	TCGA	2 cut(s)	24, 195
TasI	AATT	2 cut(s)	91, 467
TatI	WGTACW	1 cut(s)	334
Tru1I	TTAA	1 cut(s)	389
Tru9I	TTAA	1 cut(s)	389
TseFI	GTSAC	2 cut(s)	97, 570
Tsp45I	GTSAC	2 cut(s)	97, 570
TspDTI	ATGAA	4 cut(s)	247, 431, 540, 620
TspGWI	ACGGA	1 cut(s)	85
VpaK11BI	GGWCC	1 cut(s)	610
XapI	RAATTY	1 cut(s)	467
XspI	CTAG	2 cut(s)	149, 634

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.