Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr7

Orthogroup ID

OG0006627

Physical Location & Seq

Genomic Coordinates Forward (+)

75152643 .. 75155170

Gene Structure 2528 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000036033

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2217 bp

ATGGCAAGTCTAGGCACCCCAGTTATCCCTCTCCCACGTCATCCCACCACTCCCTCCCCAACCGTCAATAACGACCTGCGCTTCCCAACCCAACCGCTTCTCCCACTGATAGACCAATGCACCACCATCAACCAGCTCAAGCAAGTACATGCCCAAATGCTCAAAACAGCCCTATTCTTCGACCCTTATTCCGCTAGTAAGCTTATCACAGCTGCTGCTCTCTCTTCCTTCTCGAGCCTCCACTATGCACGCCAGGTGTTCGACCAAATTCCTGACCCGAATCTGTTCACTTGGAACGCCCTCATTCGCGCGTACGCCTCCAGCCCCGACCCGATTGAAAGCATTCTTGTATTTCTGCAGATGCTCGACGAGTGTGATGAGTGCCCCAATAAGTTTACTTTCCCTTTTTTGCTCAAGGCCGCCTCGGAGCTCCGGGCTTCCAAGGTTGGGAGAGGTTTTCATGCCATGGTGATAAAAGCGCAGCTGGGTTCGGATGTTTACATTGTTAATTCGCTCATTCACTTTTATGGGTCGTGCGGGGATTTGGATTTGGCGCGTTTGGTGTTTTTGAAGACTTACAAAAAGGATGTTGTTACTTGGAATTCTGTTATCACGGCTTTTGCTCAGGGGAATTGCCCTGAGGTGGCGTTGGAGTTGTTTAAGGAAATGGAGGCGGAGAATATGAAGCCGAATGATGTCACCATGGTTAGTGTCTTGTCAGCTTGCGCAAAGAAGGCGGATTTGGAGTTTGGGAGGTGGGTTTGTTTGCATGTTGAAAGGCATGGAGTTGAGGAGAACTTGACTTTGAATAATGCTATGCTGGATATGTATGTGAAATGTGGGAGTGTTGAAGATGCGGAGAGATTGTTTGGTAGGATGCCGGAGAAGGACGTTGTGTCGTGGACTACTATGCTTGATGGGTATGCTCGGATGGGGAAATATGATGAGGCTAGGCGTGTTTTTGCTGCCATGCCTAGTCAGGATATTGCTGCGTGGAATGTGCTCATTTCGTCTTATGAACAGAATGGTAGGCCGAAAGAGGCTTTAGCTGTCTTCCATGAGTTGCAAAAGAACAAGGGTCCCAAGCCTGATGAGGTTACTCTAGTTAGTACTCTGGCAGCGTGTGCTCAATTGGGAGCGATTGATCTTGGCGGCTGGATACATGTTTATGTAAAGAAGCAGGGAATGAAGTTGAATTGTCACCTCACAACCTCGCTTGTTGACATGTATGCAAAATGTGGGAACCTAGAGAAGGCACTTGAGGTTTTTAATTCGGTGGAGATAAGAGACGTATTTGTCTGGAGTGCCATGATTGCTGCTTTAGCAATGCATGGTCAGGGGAGGGATGCATTGCACTTTTTCTCAAAAATGTTAGAAGCTGAGGTGAAGCCAAATGCTGTGACATTTACTAACATATTATGTGCATGTAGCCACGCAGGATTGGTGGATGAGGGAAGAACATTTTTCTATCAAATGGAGCGAGTTTACGGAGTTGTGCCTGGAATAAAGCACTATGCGTGCATGGTTGACATTCTGGGTCGTTCAGGTAATCTGGAGGAAGCTGCAGAATTGATAGAGAAAATGCCAATTTCTCCCACTCCTTCTGTATGGGGGGCTCTGCTTGGGGCATGTACGCGCCATGGGAATGTTGCACTTGCTGAAAAGGCTTGTAGCCATTTGCTCGACTTGGATCCCAGAAATCATGGAGCCTATGTACTCTTATCAAATATTTATGCCAAAACAGGGAAATGGGAAGCAGTTTCTGGGTTAAGGAAGCTCATGCGAGATTCTGGAATAAAGAAAGAACCTGGTTGTAGCTCAATCGAAATTAACGGTAGTGTTCATGAATTTCTAGTTGGTGATAATACTCATCCTTTATCCAAAGATATCTACTCAACGTTGGATGAGATAGCAGGGAGATTGAAGTCAATCGGATATGTGCCAAACAGGTCACACCTACTGCAATTTGTTGAGGAAGAGGACATGAAGGAACAGGCCCTAATTCTTCATAGTGAGAAACTAGCGATTGCCTTTGGACTTATTAGCTCCAAGCCATCTCAACCAATTCGCGTTGTGAAGAATCTTCGGGTTTGTGGAGACTGCCACTCAGTTGCTAAGCTTATATCTAAGCTTTATGATAGGGAGATTTTTCTGAGAGATCGATATCGGTTTCATCATTTTAGAGAGGGGCATTGCTCATGTAATGATTACTGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006139 GO:0006396 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009507 GO:0009536 GO:0009987 GO:0010467 GO:0016070 GO:0016787 GO:0016788 GO:0031425 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DYW_deaminase PPR

Protein Analysis

739

Amino Acids

82.3

Weight (kDa)

6.5

Isoelectric Point (pI)

43.91

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPR_2	PF13041	195 - 244	8.3e-12	PPR repeat family
PPR	PF01535	198 - 227	1.7e-06	PPR repeat
PPR_2	PF13041	296 - 327	3.6e-06	PPR repeat family
PPR	PF01535	299 - 327	1.1e-06	PPR repeat
PPR_2	PF13041	328 - 376	4.5e-08	PPR repeat family
PPR	PF01535	331 - 358	4.5e-06	PPR repeat
PPR_2	PF13041	429 - 477	7.5e-10	PPR repeat family
E_motif	PF20431	547 - 609	3.5e-22	E motif
Eplus_motif	PF20430	614 - 640	4.4e-07	E+ motif
DYW_deaminase	PF14432	645 - 738	2.7e-36	DYW family of nucleic acid deaminases

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006627)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G29760
fragaria_vesca	FvH4_3g38420
malus_domestica	MD03G1072100.v1.1 MD11G1076100.v1.1 MD11G1076300.v1.1 MD11G1076700.v1.1
prunus_persica	Prupe.6G058800_v2.0.a1
pyrus_communis	pycom03g05830 pycom12g05280
rosa_chinensis	RchiOBHm_Chr5g0069041 RchiOBHm_Chr5g0069081
rosa_laevigata	RLG00000017743 RLG00000036033
rosa_multiflora	Rmu_co8508453.1_g000001 Rmu_sc0000853.1_g000010 Rmu_sc0000853.1_g000011 Rmu_sc0000936.1_g000009
rosa_roxburghii	Rroxscaffold_1G00011680
rosa_rugosa	Rorug05G0395900
rosa_samantha	Rh5AG452500 Rh5AG482500 Rh5BG471800 Rh5BG503600 Rh5CG494200
rosa_wichuraiana	Rw0G006080 Rw5G042280

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	1295
Acc16I	TGCGCA	1 cut(s)	727
Acc36I	ACCTGC	1 cut(s)	84
AccB1I	GGYRCC	1 cut(s)	14
AccII	CGCG	5 cut(s)	309, 311, 556, 1636, 2070
AciI	CCGC	8 cut(s)	95, 192, 420, 537, 674, 737, 857, 1152
AclI	AACGTT	1 cut(s)	1898
AclWI	GGATC	2 cut(s)	1685, 1698
AcsI	RAATTY	3 cut(s)	267, 601, 1847
AfaI	GTAC	5 cut(s)	147, 314, 1111, 1633, 1716
AfiI	CCNNNNNNNGG	4 cut(s)	447, 643, 1252, 1743
AflIII	ACRYGT	2 cut(s)	1162, 1224
AgsI	TTSAA	7 cut(s)	338, 571, 776, 808, 851, 1195, 1924
AhdI	GACNNNNNGTC	1 cut(s)	895
AjiI	CACGTC	1 cut(s)	38
AjnI	CCWGG	3 cut(s)	252, 1498, 1807
AjuI	GAANNNNNNNTTGG	4 cut(s)	725, 757, 1839, 1871
Alw21I	GWGCWC	3 cut(s)	432, 1005, 1129
Alw26I	GTCTC	2 cut(s)	1281, 2091
AlwI	GGATC	2 cut(s)	1685, 1698
AlwNI	CAGNNNCTG	2 cut(s)	215, 1763
Ama87I	CYCGRG	1 cut(s)	232
AoxI	GGCC	3 cut(s)	417, 1031, 1995
ApeKI	GCWGC	8 cut(s)	212, 215, 481, 965, 989, 1118, 1316, 1562
ApoI	RAATTY	3 cut(s)	267, 601, 1847
Asp700I	GAANNNNTTC	2 cut(s)	284, 342
AspLEI	GCGC	6 cut(s)	81, 311, 481, 556, 728, 1638
AspS9I	GGNCC	2 cut(s)	1079, 1996
AsuC2I	CCSGG	1 cut(s)	434
AsuHPI	GGTGA	5 cut(s)	481, 691, 1193, 1396, 1871
AvaI	CYCGRG	1 cut(s)	232
AvaII	GGWCC	1 cut(s)	1079
AxyI	CCTNAGG	1 cut(s)	639
BaeGI	GKGCMC	1 cut(s)	386
BamHI	GGATCC	1 cut(s)	1690
BanI	GGYRCC	1 cut(s)	14
BanII	GRGCYC	2 cut(s)	432, 1618
BbsI	GAAGAC	2 cut(s)	578, 1045
Bbv12I	GWGCWC	3 cut(s)	432, 1005, 1129
BbvCI	CCTCAGC	1 cut(s)	1380
BbvI	GCAGC	8 cut(s)	199, 202, 493, 952, 976, 1130, 1303, 1549
BccI	CCATC	4 cut(s)	134, 911, 925, 2062
BceAI	ACGGC	1 cut(s)	630
BciT130I	CCWGG	3 cut(s)	254, 1500, 1809
BciVI	GTATCC	1 cut(s)	1152
BcnI	CCSGG	1 cut(s)	434
BcoDI	GTCTC	2 cut(s)	1281, 2091
BfaI	CTAG	8 cut(s)	11, 195, 951, 975, 1103, 1247, 1853, 2021
BfmI	CTRYAG	2 cut(s)	356, 1563
BfuAI	ACCTGC	1 cut(s)	84
BfuI	GTATCC	1 cut(s)	1152
BlpI	GCTNAGC	1 cut(s)	2115
BmcAI	AGTACT	1 cut(s)	1111
Bme1390I	CCNGG	4 cut(s)	254, 434, 1500, 1809
Bme18I	GGWCC	1 cut(s)	1079
BmeRI	GACNNNNNGTC	1 cut(s)	895
BmeT110I	CYCGRG	1 cut(s)	232
BmgBI	CACGTC	1 cut(s)	38
BmgT120I	GGNCC	2 cut(s)	1079, 1996
BmiI	GGNNCC	6 cut(s)	16, 1080, 1081, 1244, 1692, 1708
BmrFI	CCNGG	4 cut(s)	254, 434, 1500, 1809
BmrI	ACTGGG	1 cut(s)	14
BmsI	GCATC	4 cut(s)	351, 844, 867, 1336
BmuI	ACTGGG	1 cut(s)	14
BpiI	GAAGAC	2 cut(s)	578, 1045
BpmI	CTGGAG	3 cut(s)	304, 1321, 1574
Bpu10I	CCTNAGC	2 cut(s)	624, 1380
Bpu1102I	GCTNAGC	1 cut(s)	2115
BpuEI	CTTGAG	3 cut(s)	122, 398, 1280
BpuMI	CCSGG	1 cut(s)	434
Bsa29I	ATCGAT	1 cut(s)	2161
BsaBI	GATNNNNATC	1 cut(s)	2163
BsaJI	CCNNGG	5 cut(s)	423, 441, 465, 702, 1639
BsaXI	ACNNNNNCTCC	6 cut(s)	84, 114, 851, 881, 1698, 1728
Bsc4I	CCNNNNNNNGG	4 cut(s)	447, 643, 1252, 1743
Bse1I	ACTGG	2 cut(s)	20, 2216
Bse21I	CCTNAGG	1 cut(s)	639
Bse3DI	GCAATG	3 cut(s)	1332, 1349, 2191
Bse8I	GATNNNNATC	1 cut(s)	2163
BseBI	CCWGG	3 cut(s)	254, 1500, 1809
BseCI	ATCGAT	1 cut(s)	2161
BseDI	CCNNGG	5 cut(s)	423, 441, 465, 702, 1639
BseGI	GGATG	9 cut(s)	40, 499, 592, 882, 936, 1351, 1453, 1870, 1909
BseJI	GATNNNNATC	1 cut(s)	2163
BseLI	CCNNNNNNNGG	4 cut(s)	447, 643, 1252, 1743
BseMI	GCAATG	3 cut(s)	1332, 1349, 2191
BseMII	CTCAG	5 cut(s)	630, 638, 1371, 2121, 2144
BseNI	ACTGG	2 cut(s)	20, 2216
BseRI	GAGGAG	1 cut(s)	806
BseSI	GKGCMC	1 cut(s)	386
BseXI	GCAGC	8 cut(s)	199, 202, 493, 952, 976, 1130, 1303, 1549
BseYI	CCCAGC	1 cut(s)	484
Bsh1236I	CGCG	5 cut(s)	309, 311, 556, 1636, 2070
BshFI	GGCC	3 cut(s)	419, 1033, 1997
BshNI	GGYRCC	1 cut(s)	14
BshVI	ATCGAT	1 cut(s)	2161
BsiHKAI	GWGCWC	3 cut(s)	432, 1005, 1129
BsiHKCI	CYCGRG	1 cut(s)	232
BsiSI	CCGG	2 cut(s)	433, 881
BsiWI	CGTACG	1 cut(s)	312
BslFI	GGGAC	1 cut(s)	1065
BslI	CCNNNNNNNGG	4 cut(s)	447, 643, 1252, 1743
BsmAI	GTCTC	2 cut(s)	1281, 2091
BsmBI	CGTCTC	1 cut(s)	1281
BsmFI	GGGAC	1 cut(s)	1065
BsmI	GAATGC	1 cut(s)	342
BsnI	GGCC	3 cut(s)	419, 1033, 1997
BsoBI	CYCGRG	1 cut(s)	232
Bsp1286I	GDGCHC	5 cut(s)	386, 432, 1005, 1129, 1618
Bsp143I	GATC	3 cut(s)	1144, 1690, 2158
Bsp1720I	GCTNAGC	1 cut(s)	2115
Bsp19I	CCATGG	3 cut(s)	465, 702, 1639
BspACI	CCGC	8 cut(s)	95, 192, 420, 537, 674, 737, 857, 1152
BspANI	GGCC	3 cut(s)	419, 1033, 1997
BspCNI	CTCAG	5 cut(s)	631, 637, 1372, 2120, 2145
BspDI	ATCGAT	1 cut(s)	2161
BspFNI	CGCG	5 cut(s)	309, 311, 556, 1636, 2070
BspHI	TCATGA	1 cut(s)	1843
BspLI	GGNNCC	6 cut(s)	16, 1080, 1081, 1244, 1692, 1708
BspMAI	CTGCAG	2 cut(s)	360, 1567
BspMI	ACCTGC	1 cut(s)	84
BspPI	GGATC	2 cut(s)	1685, 1698
BspT107I	GGYRCC	1 cut(s)	14
BsrDI	GCAATG	3 cut(s)	1332, 1349, 2191
BsrI	ACTGG	2 cut(s)	20, 2216
BssECI	CCNNGG	5 cut(s)	423, 441, 465, 702, 1639
BssMI	GATC	3 cut(s)	1144, 1690, 2158
BssT1I	CCWWGG	4 cut(s)	441, 465, 702, 1639
Bst2UI	CCWGG	3 cut(s)	254, 1500, 1809
Bst4CI	ACNGT	2 cut(s)	64, 1835
Bst6I	CTCTTC	2 cut(s)	229, 1971
BstAPI	GCANNNNNTGC	1 cut(s)	1124
BstC8I	GCNNGC	3 cut(s)	250, 724, 1519
BstDEI	CTNAG	7 cut(s)	624, 639, 1380, 2107, 2115, 2127, 2153
BstDSI	CCRYGG	3 cut(s)	465, 702, 1639
BstENI	CCTNNNNNAGG	1 cut(s)	1250
BstF5I	GGATG	9 cut(s)	40, 499, 592, 882, 936, 1351, 1453, 1870, 1909
BstFNI	CGCG	5 cut(s)	309, 311, 556, 1636, 2070
BstHHI	GCGC	6 cut(s)	81, 311, 481, 556, 728, 1638
BstKTI	GATC	3 cut(s)	1147, 1693, 2161
BstMAI	GTCTC	2 cut(s)	1281, 2091
BstMBI	GATC	3 cut(s)	1144, 1690, 2158
BstMWI	GCNNNNNNNGC	5 cut(s)	734, 1124, 1313, 1322, 1664
BstNI	CCWGG	3 cut(s)	254, 1500, 1809
BstNSI	RCATGY	6 cut(s)	152, 773, 1166, 1228, 1428, 1632
BstSCI	CCNGG	4 cut(s)	252, 432, 1498, 1807
BstSFI	CTRYAG	2 cut(s)	356, 1563
BstSLI	GKGCMC	1 cut(s)	386
BstUI	CGCG	5 cut(s)	309, 311, 556, 1636, 2070
BstV1I	GCAGC	8 cut(s)	199, 202, 493, 952, 976, 1130, 1303, 1549
BstV2I	GAAGAC	2 cut(s)	578, 1045
BstX2I	RGATCY	1 cut(s)	1690
BstYI	RGATCY	1 cut(s)	1690
Bsu15I	ATCGAT	1 cut(s)	2161
Bsu36I	CCTNAGG	1 cut(s)	639
BsuI	GTATCC	1 cut(s)	1152
BsuRI	GGCC	3 cut(s)	419, 1033, 1997
BsuTUI	ATCGAT	1 cut(s)	2161
BtgI	CCRYGG	3 cut(s)	465, 702, 1639
BtrI	CACGTC	1 cut(s)	38
BtsCI	GGATG	9 cut(s)	40, 499, 592, 882, 936, 1351, 1453, 1870, 1909
BtsIMutI	CAGTG	1 cut(s)	104
BveI	ACCTGC	1 cut(s)	84
Cac8I	GCNNGC	3 cut(s)	250, 724, 1519
CaiI	CAGNNNCTG	2 cut(s)	215, 1763
CciI	TCATGA	1 cut(s)	1843
CfoI	GCGC	6 cut(s)	81, 311, 481, 556, 728, 1638
Cfr13I	GGNCC	2 cut(s)	1079, 1996
ClaI	ATCGAT	1 cut(s)	2161
CsiI	ACCWGGT	1 cut(s)	1807
Csp6I	GTAC	5 cut(s)	146, 313, 1110, 1632, 1715
CviQI	GTAC	5 cut(s)	146, 313, 1110, 1632, 1715
DdeI	CTNAG	7 cut(s)	624, 639, 1380, 2107, 2115, 2127, 2153
DpnI	GATC	3 cut(s)	1146, 1692, 2160
DpnII	GATC	3 cut(s)	1144, 1690, 2158
DrdI	GACNNNNNNGTC	1 cut(s)	1295
DriI	GACNNNNNGTC	1 cut(s)	895
DseDI	GACNNNNNNGTC	1 cut(s)	1295
Eam1104I	CTCTTC	2 cut(s)	229, 1971
Eam1105I	GACNNNNNGTC	1 cut(s)	895
EarI	CTCTTC	2 cut(s)	229, 1971
EciI	GGCGGA	2 cut(s)	689, 752
Ecl136II	GAGCTC	1 cut(s)	430
Eco130I	CCWWGG	4 cut(s)	441, 465, 702, 1639
Eco24I	GRGCYC	2 cut(s)	432, 1618
Eco32I	GATATC	2 cut(s)	1888, 2165
Eco47I	GGWCC	1 cut(s)	1079
Eco53kI	GAGCTC	1 cut(s)	430
Eco81I	CCTNAGG	1 cut(s)	639
Eco88I	CYCGRG	1 cut(s)	232
EcoICRI	GAGCTC	1 cut(s)	430
EcoNI	CCTNNNNNAGG	1 cut(s)	1250
EcoO109I	RGGNCCY	2 cut(s)	1079, 1996
EcoRI	GAATTC	1 cut(s)	601
EcoRII	CCWGG	3 cut(s)	252, 1498, 1807
EcoRV	GATATC	2 cut(s)	1888, 2165
EcoT14I	CCWWGG	4 cut(s)	441, 465, 702, 1639
EcoT22I	ATGCAT	2 cut(s)	1332, 1351
EcoT38I	GRGCYC	2 cut(s)	432, 1618
ErhI	CCWWGG	4 cut(s)	441, 465, 702, 1639
Esp3I	CGTCTC	1 cut(s)	1281
FaqI	GGGAC	1 cut(s)	1065
FauI	CCCGC	1 cut(s)	530
FokI	GGATG	9 cut(s)	27, 506, 599, 889, 943, 1358, 1460, 1857, 1916
FriOI	GRGCYC	2 cut(s)	432, 1618
FspBI	CTAG	8 cut(s)	11, 195, 951, 975, 1103, 1247, 1853, 2021
FspI	TGCGCA	1 cut(s)	727
GlaI	GCGC	6 cut(s)	80, 310, 480, 555, 727, 1637
GsaI	CCCAGC	1 cut(s)	488
GsuI	CTGGAG	3 cut(s)	304, 1321, 1574
HaeIII	GGCC	3 cut(s)	419, 1033, 1997
HapII	CCGG	2 cut(s)	433, 881
HhaI	GCGC	6 cut(s)	81, 311, 481, 556, 728, 1638
Hin6I	GCGC	6 cut(s)	79, 309, 479, 554, 726, 1636
HinP1I	GCGC	6 cut(s)	79, 309, 479, 554, 726, 1636
HincII	GTYRAC	2 cut(s)	1222, 1528
HindII	GTYRAC	2 cut(s)	1222, 1528
HindIII	AAGCTT	3 cut(s)	200, 2117, 2129
HinfI	GANTC	3 cut(s)	280, 1787, 2080
HpaII	CCGG	2 cut(s)	433, 881
HphI	GGTGA	5 cut(s)	481, 691, 1193, 1396, 1871
Hpy166II	GTNNAC	7 cut(s)	288, 396, 499, 903, 1222, 1486, 1528
Hpy188I	TCNGA	5 cut(s)	427, 493, 930, 1934, 2154
Hpy188III	TCNNGA	7 cut(s)	232, 272, 980, 1300, 1553, 1791, 1844
Hpy8I	GTNNAC	7 cut(s)	288, 396, 499, 903, 1222, 1486, 1528
Hpy99I	CGWCG	1 cut(s)	371
HpyAV	CCTTC	6 cut(s)	238, 727, 880, 1246, 1611, 1981
HpyCH4III	ACNGT	2 cut(s)	64, 1835
HpyCH4IV	ACGT	4 cut(s)	37, 891, 1290, 1898
HpyF10VI	GCNNNNNNNGC	5 cut(s)	734, 1124, 1313, 1322, 1664
HpyF3I	CTNAG	7 cut(s)	624, 639, 1380, 2107, 2115, 2127, 2153
HpySE526I	ACGT	4 cut(s)	37, 891, 1290, 1898
HspAI	GCGC	6 cut(s)	79, 309, 479, 554, 726, 1636
KflI	GGGWCCC	1 cut(s)	1079
Kzo9I	GATC	3 cut(s)	1144, 1690, 2158
LmnI	GCTCC	6 cut(s)	427, 435, 1136, 1477, 1706, 2051
Lsp1109I	GCAGC	8 cut(s)	199, 202, 493, 952, 976, 1130, 1303, 1549
LweI	GCATC	4 cut(s)	351, 844, 867, 1336
MabI	ACCWGGT	1 cut(s)	1807
MaeI	CTAG	8 cut(s)	11, 195, 951, 975, 1103, 1247, 1853, 2021
MaeII	ACGT	4 cut(s)	37, 891, 1290, 1898
MaeIII	GTNAC	6 cut(s)	592, 697, 1096, 1199, 1399, 1950
MalI	GATC	3 cut(s)	1146, 1692, 2160
MboI	GATC	3 cut(s)	1144, 1690, 2158
MfeI	CAATTG	1 cut(s)	1130
MflI	RGATCY	1 cut(s)	1690
MhlI	GDGCHC	5 cut(s)	386, 432, 1005, 1129, 1618
MmeI	TCCRAC	2 cut(s)	630, 1881
Mph1103I	ATGCAT	2 cut(s)	1332, 1351
MroXI	GAANNNNTTC	2 cut(s)	284, 342
MseI	TTAA	5 cut(s)	507, 660, 1269, 1769, 1830
MslI	CAYNNNNRTG	3 cut(s)	525, 1167, 1644
MspA1I	CMGCKG	2 cut(s)	212, 484
MspI	CCGG	2 cut(s)	433, 881
MspR9I	CCNGG	4 cut(s)	254, 434, 1500, 1809
MunI	CAATTG	1 cut(s)	1130
Mva1269I	GAATGC	1 cut(s)	342
MvaI	CCWGG	3 cut(s)	254, 1500, 1809
MvnI	CGCG	5 cut(s)	309, 311, 556, 1636, 2070
MwoI	GCNNNNNNNGC	5 cut(s)	734, 1124, 1313, 1322, 1664
NciI	CCSGG	1 cut(s)	434
NcoI	CCATGG	3 cut(s)	465, 702, 1639
NdeII	GATC	3 cut(s)	1144, 1690, 2158
NlaIV	GGNNCC	6 cut(s)	16, 1080, 1081, 1244, 1692, 1708
NmuCI	GTSAC	4 cut(s)	697, 1199, 1399, 1950
NsbI	TGCGCA	1 cut(s)	727
NsiI	ATGCAT	2 cut(s)	1332, 1351
NspI	RCATGY	6 cut(s)	152, 773, 1166, 1228, 1428, 1632
PaeR7I	CTCGAG	1 cut(s)	232
PagI	TCATGA	1 cut(s)	1843
PciI	ACATGT	2 cut(s)	1162, 1224
PctI	GAATGC	1 cut(s)	342
PdmI	GAANNNNTTC	2 cut(s)	284, 342
PfeI	GAWTC	3 cut(s)	280, 1787, 2080
Pfl23II	CGTACG	1 cut(s)	312
PpuMI	RGGWCCY	1 cut(s)	1079
PscI	ACATGT	2 cut(s)	1162, 1224
Psp124BI	GAGCTC	1 cut(s)	432
Psp1406I	AACGTT	1 cut(s)	1898
Psp5II	RGGWCCY	1 cut(s)	1079
Psp6I	CCWGG	3 cut(s)	252, 1498, 1807
PspFI	CCCAGC	1 cut(s)	484
PspGI	CCWGG	3 cut(s)	252, 1498, 1807
PspLI	CGTACG	1 cut(s)	312
PspN4I	GGNNCC	6 cut(s)	16, 1080, 1081, 1244, 1692, 1708
PspPI	GGNCC	2 cut(s)	1079, 1996
PspPPI	RGGWCCY	1 cut(s)	1079
PstI	CTGCAG	2 cut(s)	360, 1567
PstNI	CAGNNNCTG	2 cut(s)	215, 1763
PsuI	RGATCY	1 cut(s)	1690
PvuII	CAGCTG	2 cut(s)	212, 484
RsaI	GTAC	5 cut(s)	147, 314, 1111, 1633, 1716
RsaNI	GTAC	5 cut(s)	146, 313, 1110, 1632, 1715
RseI	CAYNNNNRTG	3 cut(s)	525, 1167, 1644
SacI	GAGCTC	1 cut(s)	432
SaqAI	TTAA	5 cut(s)	507, 660, 1269, 1769, 1830
Sau3AI	GATC	3 cut(s)	1144, 1690, 2158
Sau96I	GGNCC	2 cut(s)	1079, 1996
ScaI	AGTACT	1 cut(s)	1111
ScrFI	CCNGG	4 cut(s)	254, 434, 1500, 1809
SduI	GDGCHC	5 cut(s)	386, 432, 1005, 1129, 1618
SexAI	ACCWGGT	1 cut(s)	1807
SfaNI	GCATC	4 cut(s)	351, 844, 867, 1336
SfcI	CTRYAG	2 cut(s)	356, 1563
Sfr274I	CTCGAG	1 cut(s)	232
SinI	GGWCC	1 cut(s)	1079
SlaI	CTCGAG	1 cut(s)	232
SmiMI	CAYNNNNRTG	3 cut(s)	525, 1167, 1644
SmlI	CTYRAG	4 cut(s)	137, 232, 413, 1259
SmoI	CTYRAG	4 cut(s)	137, 232, 413, 1259
SsiI	CCGC	8 cut(s)	95, 192, 420, 537, 674, 737, 857, 1152
SspI	AATATT	1 cut(s)	1729
SspMI	CTAG	8 cut(s)	11, 195, 951, 975, 1103, 1247, 1853, 2021
SstI	GAGCTC	1 cut(s)	432
StyD4I	CCNGG	4 cut(s)	252, 432, 1498, 1807
StyI	CCWWGG	4 cut(s)	441, 465, 702, 1639
TaaI	ACNGT	2 cut(s)	64, 1835
TaiI	ACGT	4 cut(s)	40, 894, 1293, 1901
TaqI	TCGA	7 cut(s)	180, 233, 261, 366, 1683, 1824, 2161
TatI	WGTACW	3 cut(s)	145, 1109, 1714
TauI	GCSGC	2 cut(s)	422, 1155
TfiI	GAWTC	3 cut(s)	280, 1787, 2080
Tru1I	TTAA	5 cut(s)	507, 660, 1269, 1769, 1830
Tru9I	TTAA	5 cut(s)	507, 660, 1269, 1769, 1830
TscAI	CASTG	1 cut(s)	111
TseFI	GTSAC	4 cut(s)	697, 1199, 1399, 1950
TseI	GCWGC	8 cut(s)	212, 215, 481, 965, 989, 1118, 1316, 1562
Tsp45I	GTSAC	4 cut(s)	697, 1199, 1399, 1950
TspDTI	ATGAA	9 cut(s)	449, 698, 1032, 1202, 1832, 1860, 1997, 2000, 2162
TspGWI	ACGGA	1 cut(s)	1503
TspRI	CASTG	1 cut(s)	111
VpaK11BI	GGWCC	1 cut(s)	1079
XagI	CCTNNNNNAGG	1 cut(s)	1250
XapI	RAATTY	3 cut(s)	267, 601, 1847
XceI	RCATGY	6 cut(s)	152, 773, 1166, 1228, 1428, 1632
XhoI	CTCGAG	1 cut(s)	232
XmnI	GAANNNNTTC	2 cut(s)	284, 342
XspI	CTAG	8 cut(s)	11, 195, 951, 975, 1103, 1247, 1853, 2021
ZrmI	AGTACT	1 cut(s)	1111
Zsp2I	ATGCAT	2 cut(s)	1332, 1351

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.