Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr11

Orthogroup ID

OG0006627

Physical Location & Seq

Genomic Coordinates Reverse (-)

6502371 .. 6503111

Gene Structure 741 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD11G1076700.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 651 bp

ATGCTTTATTGCTGTGTGGAAAGTCCCAATAAGTTTACTTACCCGTTTGTGATCAAGGCGGCTTCAGAGCTCCGAGTTTTGAAGCTCAGAAGAGGGTTTCATGGCATGGTGATAAAGGCCTCGCTTGGTTCGGATGTTGATATTCTCAATTCTCTGGTTCATTTCTATGGGTCATGCGAGGATTTGGATTTCGCATGGTGGGTCTTCGTGAAGACTACTAAGAAAGATGTTGTGTCTTGGAATTCTATGATCACGGCTTTTGCGCAGAGGAACTGTCCAGAGGAAGCCTTGGAGTTGTTTAAGGAGATGGATGAGGAGAATGTGAAGCCGAATGATGAACTTGACTTTGAACAATGCTATGCTATGCTTGATATGTGTGTGAAATGTGGGAGCATTGAGGAAGCGAAAAGATTGTTTGATAGGATGTCGGAGAAGGATATTTTCTCGTGGACTACAATGCTTGATGGGTATGTTCAGTCAGGAAATTATGATGAGGCTTGGTGGGTTTTCGCTGCAATGCCTGGTCAAGACATTGCTGCATGGAATGTCCTCATTTCGTCTTATGAACAAAGTGACAAGCCAAAGGAGGCTTTGGCGATTTTCATGACTTGCAGAAAAGGAAGAGCCCGAAACCTGACGAAGTCACTCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006139 GO:0006396 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009507 GO:0009536 GO:0009987 GO:0010467 GO:0016070 GO:0016787 GO:0016788 GO:0031425 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DYW_deaminase PPR

Protein Analysis

217

Amino Acids

24.88

Weight (kDa)

5.01

Isoelectric Point (pI)

41.41

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPR_2	PF13041	75 - 112	4.8e-11	PPR repeat family
PPR	PF01535	78 - 108	1.1e-09	PPR repeat
PPR	PF01535	148 - 174	1.4e-06	PPR repeat

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0006627)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G29760
fragaria_vesca	FvH4_3g38420
malus_domestica	MD03G1072100.v1.1 MD11G1076100.v1.1 MD11G1076300.v1.1 MD11G1076700.v1.1
prunus_persica	Prupe.6G058800_v2.0.a1
pyrus_communis	pycom03g05830 pycom12g05280
rosa_chinensis	RchiOBHm_Chr5g0069041 RchiOBHm_Chr5g0069081
rosa_laevigata	RLG00000017743 RLG00000036033
rosa_multiflora	Rmu_co8508453.1_g000001 Rmu_sc0000853.1_g000010 Rmu_sc0000853.1_g000011 Rmu_sc0000936.1_g000009
rosa_roxburghii	Rroxscaffold_1G00011680
rosa_rugosa	Rorug05G0395900
rosa_samantha	Rh5AG452500 Rh5AG482500 Rh5BG471800 Rh5BG503600 Rh5CG494200
rosa_wichuraiana	Rw0G006080 Rw5G042280

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	264
AciI	CCGC	1 cut(s)	59
AcsI	RAATTY	1 cut(s)	241
AcuI	CTGAAG	1 cut(s)	48
AgsI	TTSAA	2 cut(s)	82, 350
AjnI	CCWGG	1 cut(s)	520
AluBI	AGCT	2 cut(s)	70, 85
AluI	AGCT	2 cut(s)	70, 85
Alw21I	GWGCWC	1 cut(s)	72
AoxI	GGCC	1 cut(s)	117
ApeKI	GCWGC	2 cut(s)	512, 536
ApoI	RAATTY	1 cut(s)	241
AspLEI	GCGC	1 cut(s)	265
AsuHPI	GGTGA	1 cut(s)	121
BanII	GRGCYC	2 cut(s)	72, 628
BauI	CACGAG	1 cut(s)	445
BbsI	GAAGAC	2 cut(s)	196, 218
Bbv12I	GWGCWC	1 cut(s)	72
BbvI	GCAGC	2 cut(s)	499, 523
BccI	CCATC	2 cut(s)	301, 458
BceAI	ACGGC	1 cut(s)	270
BciT130I	CCWGG	1 cut(s)	522
BclI	TGATCA	2 cut(s)	51, 249
BfaI	CTAG	1 cut(s)	649
BisI	GCNGC	3 cut(s)	60, 513, 537
BlsI	GCNGC	3 cut(s)	61, 514, 538
Bme1390I	CCNGG	1 cut(s)	522
BmrFI	CCNGG	1 cut(s)	522
BpiI	GAAGAC	2 cut(s)	196, 218
BsaJI	CCNNGG	1 cut(s)	288
Bse3DI	GCAATG	2 cut(s)	522, 531
BseBI	CCWGG	1 cut(s)	522
BseDI	CCNNGG	1 cut(s)	288
BseGI	GGATG	3 cut(s)	139, 316, 429
BseMI	GCAATG	2 cut(s)	522, 531
BseMII	CTCAG	1 cut(s)	100
BseRI	GAGGAG	1 cut(s)	329
BseXI	GCAGC	2 cut(s)	499, 523
BshFI	GGCC	1 cut(s)	119
BsiHKAI	GWGCWC	1 cut(s)	72
BslFI	GGGAC	1 cut(s)	9
BsmFI	GGGAC	1 cut(s)	9
BsnI	GGCC	1 cut(s)	119
Bsp1286I	GDGCHC	2 cut(s)	72, 628
Bsp143I	GATC	2 cut(s)	51, 249
BspACI	CCGC	1 cut(s)	59
BspANI	GGCC	1 cut(s)	119
BspCNI	CTCAG	1 cut(s)	99
BspHI	TCATGA	1 cut(s)	603
BspQI	GCTCTTC	1 cut(s)	616
BsrDI	GCAATG	2 cut(s)	522, 531
BssECI	CCNNGG	1 cut(s)	288
BssMI	GATC	2 cut(s)	51, 249
BssSI	CACGAG	1 cut(s)	445
BssT1I	CCWWGG	1 cut(s)	288
Bst2BI	CACGAG	1 cut(s)	445
Bst2UI	CCWGG	1 cut(s)	522
Bst4CI	ACNGT	1 cut(s)	275
Bst6I	CTCTTC	2 cut(s)	85, 616
BstDEI	CTNAG	2 cut(s)	86, 219
BstF5I	GGATG	3 cut(s)	139, 316, 429
BstHHI	GCGC	1 cut(s)	265
BstKTI	GATC	2 cut(s)	54, 252
BstMBI	GATC	2 cut(s)	51, 249
BstNI	CCWGG	1 cut(s)	522
BstSCI	CCNGG	1 cut(s)	520
BstV1I	GCAGC	2 cut(s)	499, 523
BstV2I	GAAGAC	2 cut(s)	196, 218
BsuRI	GGCC	1 cut(s)	119
BtsCI	GGATG	3 cut(s)	139, 316, 429
CciI	TCATGA	1 cut(s)	603
CfoI	GCGC	1 cut(s)	265
CviAII	CATG	6 cut(s)	101, 106, 174, 195, 540, 604
DdeI	CTNAG	2 cut(s)	86, 219
DpnI	GATC	2 cut(s)	53, 251
DpnII	GATC	2 cut(s)	51, 249
Eam1104I	CTCTTC	2 cut(s)	85, 616
EarI	CTCTTC	2 cut(s)	85, 616
Ecl136II	GAGCTC	1 cut(s)	70
Eco130I	CCWWGG	1 cut(s)	288
Eco147I	AGGCCT	1 cut(s)	119
Eco24I	GRGCYC	2 cut(s)	72, 628
Eco53kI	GAGCTC	1 cut(s)	70
Eco57I	CTGAAG	1 cut(s)	48
EcoICRI	GAGCTC	1 cut(s)	70
EcoRI	GAATTC	1 cut(s)	241
EcoRII	CCWGG	1 cut(s)	520
EcoT14I	CCWWGG	1 cut(s)	288
EcoT38I	GRGCYC	2 cut(s)	72, 628
ErhI	CCWWGG	1 cut(s)	288
FaeI	CATG	6 cut(s)	104, 109, 177, 198, 543, 607
FaqI	GGGAC	1 cut(s)	9
FatI	CATG	6 cut(s)	100, 105, 173, 194, 539, 603
FbaI	TGATCA	2 cut(s)	51, 249
Fnu4HI	GCNGC	3 cut(s)	60, 513, 537
FokI	GGATG	3 cut(s)	146, 323, 436
FriOI	GRGCYC	2 cut(s)	72, 628
Fsp4HI	GCNGC	3 cut(s)	60, 513, 537
FspBI	CTAG	1 cut(s)	649
FspI	TGCGCA	1 cut(s)	264
GlaI	GCGC	1 cut(s)	264
GluI	GCNGC	3 cut(s)	60, 513, 537
HaeIII	GGCC	1 cut(s)	119
HhaI	GCGC	1 cut(s)	265
Hin1II	CATG	6 cut(s)	104, 109, 177, 198, 543, 607
Hin6I	GCGC	1 cut(s)	263
HinP1I	GCGC	1 cut(s)	263
HphI	GGTGA	1 cut(s)	121
Hpy166II	GTNNAC	2 cut(s)	36, 450
Hpy188I	TCNGA	5 cut(s)	67, 74, 89, 133, 430
Hpy188III	TCNNGA	5 cut(s)	208, 278, 480, 527, 604
Hpy8I	GTNNAC	2 cut(s)	36, 450
HpyAV	CCTTC	1 cut(s)	427
HpyCH4III	ACNGT	1 cut(s)	275
HpyCH4V	TGCA	3 cut(s)	515, 539, 612
HpyF3I	CTNAG	2 cut(s)	86, 219
Hsp92II	CATG	6 cut(s)	104, 109, 177, 198, 543, 607
HspAI	GCGC	1 cut(s)	263
Ksp22I	TGATCA	2 cut(s)	51, 249
Kzo9I	GATC	2 cut(s)	51, 249
LguI	GCTCTTC	1 cut(s)	616
LmnI	GCTCC	2 cut(s)	75, 390
LpnPI	CCDG	6 cut(s)	140, 291, 465, 507, 534, 647
Lsp1109I	GCAGC	2 cut(s)	499, 523
MaeI	CTAG	1 cut(s)	649
MaeIII	GTNAC	2 cut(s)	572, 642
MalI	GATC	2 cut(s)	53, 251
MboI	GATC	2 cut(s)	51, 249
MboII	GAAGA	4 cut(s)	102, 196, 223, 633
MhlI	GDGCHC	2 cut(s)	72, 628
MluCI	AATT	3 cut(s)	148, 241, 484
MmeI	TCCRAC	1 cut(s)	408
MseI	TTAA	1 cut(s)	300
MslI	CAYNNNNRTG	1 cut(s)	165
MspR9I	CCNGG	1 cut(s)	522
MvaI	CCWGG	1 cut(s)	522
NdeII	GATC	2 cut(s)	51, 249
NlaIII	CATG	6 cut(s)	104, 109, 177, 198, 543, 607
NmuCI	GTSAC	2 cut(s)	572, 642
NsbI	TGCGCA	1 cut(s)	264
PagI	TCATGA	1 cut(s)	603
PceI	AGGCCT	1 cut(s)	119
PciSI	GCTCTTC	1 cut(s)	616
PflFI	GACNNNGTC	1 cut(s)	640
PkrI	GCNGC	3 cut(s)	61, 514, 538
Psp124BI	GAGCTC	1 cut(s)	72
Psp6I	CCWGG	1 cut(s)	520
PspGI	CCWGG	1 cut(s)	520
PsyI	GACNNNGTC	1 cut(s)	640
RseI	CAYNNNNRTG	1 cut(s)	165
SacI	GAGCTC	1 cut(s)	72
SapI	GCTCTTC	1 cut(s)	616
SaqAI	TTAA	1 cut(s)	300
SatI	GCNGC	3 cut(s)	60, 513, 537
Sau3AI	GATC	2 cut(s)	51, 249
ScrFI	CCNGG	1 cut(s)	522
SduI	GDGCHC	2 cut(s)	72, 628
SetI	ASST	3 cut(s)	72, 87, 636
SmiMI	CAYNNNNRTG	1 cut(s)	165
Sse9I	AATT	3 cut(s)	148, 241, 484
SseBI	AGGCCT	1 cut(s)	119
SsiI	CCGC	1 cut(s)	59
SspMI	CTAG	1 cut(s)	649
SstI	GAGCTC	1 cut(s)	72
StuI	AGGCCT	1 cut(s)	119
StyD4I	CCNGG	1 cut(s)	520
StyI	CCWWGG	1 cut(s)	288
TaaI	ACNGT	1 cut(s)	275
TasI	AATT	3 cut(s)	148, 241, 484
TauI	GCSGC	1 cut(s)	62
Tru1I	TTAA	1 cut(s)	300
Tru9I	TTAA	1 cut(s)	300
TseFI	GTSAC	2 cut(s)	572, 642
TseI	GCWGC	2 cut(s)	512, 536
Tsp45I	GTSAC	2 cut(s)	572, 642
TspDTI	ATGAA	5 cut(s)	89, 149, 351, 579, 592
Tth111I	GACNNNGTC	1 cut(s)	640
XapI	RAATTY	1 cut(s)	241
XspI	CTAG	1 cut(s)	649

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.