Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000853.1

Orthogroup ID

OG0006627

Physical Location & Seq

Genomic Coordinates Forward (+)

29878 .. 30364

Gene Structure 487 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000853.1_g000011.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 393 bp

atgtatgcaaaatgtgggaatctagagaaggcttttgaggtttttaattatgtggagataagagacgtatttgtctggagcgccatgattgctgctttggcaatacatggattggtggatgaggggagaatatttttctatcaaatggagcgagtttatggagttgtgcctggaataaagcactatgcgtgcatggttgacattcttggtcgttcaggtaatctggaggaagctgcagagctgatagagaaaatgccaatttctcccactccttctgtatggggggctctgcttggtgcatgtacgcgccatgggaatattgcacttgctgaaaaggcttgtagccatttgctcgacttggatcccagaaatcatggagcatatatactctaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006139 GO:0006396 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009507 GO:0009536 GO:0009987 GO:0010467 GO:0016070 GO:0016787 GO:0016788 GO:0031425 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DYW_deaminase PPR

Protein Analysis

130

Amino Acids

14.41

Weight (kDa)

5.67

Isoelectric Point (pI)

56.59

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006627)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G29760
fragaria_vesca	FvH4_3g38420
malus_domestica	MD03G1072100.v1.1 MD11G1076100.v1.1 MD11G1076300.v1.1 MD11G1076700.v1.1
prunus_persica	Prupe.6G058800_v2.0.a1
pyrus_communis	pycom03g05830 pycom12g05280
rosa_chinensis	RchiOBHm_Chr5g0069041 RchiOBHm_Chr5g0069081
rosa_laevigata	RLG00000017743 RLG00000036033
rosa_multiflora	Rmu_co8508453.1_g000001 Rmu_sc0000853.1_g000010 Rmu_sc0000853.1_g000011 Rmu_sc0000936.1_g000009
rosa_roxburghii	Rroxscaffold_1G00011680
rosa_rugosa	Rorug05G0395900
rosa_samantha	Rh5AG452500 Rh5AG482500 Rh5BG471800 Rh5BG503600 Rh5CG494200
rosa_wichuraiana	Rw0G006080 Rw5G042280

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	71
AccII	CGCG	1 cut(s)	307
AclWI	GGATC	2 cut(s)	356, 369
AfaI	GTAC	1 cut(s)	304
AjnI	CCWGG	1 cut(s)	169
AluBI	AGCT	2 cut(s)	233, 241
AluI	AGCT	2 cut(s)	233, 241
Alw26I	GTCTC	1 cut(s)	57
AlwI	GGATC	2 cut(s)	356, 369
ApeKI	GCWGC	2 cut(s)	92, 233
AspLEI	GCGC	2 cut(s)	83, 309
BamHI	GGATCC	1 cut(s)	361
BanII	GRGCYC	1 cut(s)	289
BbvI	GCAGC	2 cut(s)	79, 220
BciT130I	CCWGG	1 cut(s)	171
BcoDI	GTCTC	1 cut(s)	57
BfaI	CTAG	1 cut(s)	23
BfmI	CTRYAG	1 cut(s)	234
BfoI	RGCGCY	1 cut(s)	84
BisI	GCNGC	2 cut(s)	93, 234
BlsI	GCNGC	2 cut(s)	94, 235
Bme1390I	CCNGG	1 cut(s)	171
BmiI	GGNNCC	1 cut(s)	363
BmrFI	CCNGG	1 cut(s)	171
BpmI	CTGGAG	2 cut(s)	97, 245
BsaJI	CCNNGG	1 cut(s)	310
BseBI	CCWGG	1 cut(s)	171
BseDI	CCNNGG	1 cut(s)	310
BseGI	GGATG	1 cut(s)	124
BseXI	GCAGC	2 cut(s)	79, 220
Bsh1236I	CGCG	1 cut(s)	307
BsmAI	GTCTC	1 cut(s)	57
BsmBI	CGTCTC	1 cut(s)	57
Bsp1286I	GDGCHC	1 cut(s)	289
Bsp143I	GATC	1 cut(s)	361
Bsp19I	CCATGG	1 cut(s)	310
BspFNI	CGCG	1 cut(s)	307
BspLI	GGNNCC	1 cut(s)	363
BspMAI	CTGCAG	1 cut(s)	238
BspPI	GGATC	2 cut(s)	356, 369
BssECI	CCNNGG	1 cut(s)	310
BssMI	GATC	1 cut(s)	361
BssT1I	CCWWGG	1 cut(s)	310
Bst2UI	CCWGG	1 cut(s)	171
BstC8I	GCNNGC	1 cut(s)	190
BstDSI	CCRYGG	1 cut(s)	310
BstF5I	GGATG	1 cut(s)	124
BstFNI	CGCG	1 cut(s)	307
BstH2I	RGCGCY	1 cut(s)	84
BstHHI	GCGC	2 cut(s)	83, 309
BstKTI	GATC	1 cut(s)	364
BstMAI	GTCTC	1 cut(s)	57
BstMBI	GATC	1 cut(s)	361
BstMWI	GCNNNNNNNGC	3 cut(s)	89, 98, 335
BstNI	CCWGG	1 cut(s)	171
BstNSI	RCATGY	1 cut(s)	303
BstSCI	CCNGG	1 cut(s)	169
BstSFI	CTRYAG	1 cut(s)	234
BstUI	CGCG	1 cut(s)	307
BstV1I	GCAGC	2 cut(s)	79, 220
BstX2I	RGATCY	1 cut(s)	361
BstYI	RGATCY	1 cut(s)	361
BtgI	CCRYGG	1 cut(s)	310
BtsCI	GGATG	1 cut(s)	124
Cac8I	GCNNGC	1 cut(s)	190
CfoI	GCGC	2 cut(s)	83, 309
Csp6I	GTAC	1 cut(s)	303
CviAII	CATG	6 cut(s)	85, 107, 193, 300, 311, 374
CviJI	RGCY	6 cut(s)	32, 233, 241, 287, 338, 345
CviKI_1	RGCY	6 cut(s)	32, 233, 241, 287, 338, 345
CviQI	GTAC	1 cut(s)	303
DpnI	GATC	1 cut(s)	363
DpnII	GATC	1 cut(s)	361
DrdI	GACNNNNNNGTC	1 cut(s)	71
DseDI	GACNNNNNNGTC	1 cut(s)	71
Eco130I	CCWWGG	1 cut(s)	310
Eco24I	GRGCYC	1 cut(s)	289
EcoRII	CCWGG	1 cut(s)	169
EcoT14I	CCWWGG	1 cut(s)	310
EcoT38I	GRGCYC	1 cut(s)	289
ErhI	CCWWGG	1 cut(s)	310
Esp3I	CGTCTC	1 cut(s)	57
FaeI	CATG	6 cut(s)	88, 110, 196, 303, 314, 377
FatI	CATG	6 cut(s)	84, 106, 192, 299, 310, 373
Fnu4HI	GCNGC	2 cut(s)	93, 234
FokI	GGATG	1 cut(s)	131
FriOI	GRGCYC	1 cut(s)	289
Fsp4HI	GCNGC	2 cut(s)	93, 234
FspBI	CTAG	1 cut(s)	23
GlaI	GCGC	2 cut(s)	82, 308
GluI	GCNGC	2 cut(s)	93, 234
GsuI	CTGGAG	2 cut(s)	97, 245
HaeII	RGCGCY	1 cut(s)	84
HhaI	GCGC	2 cut(s)	83, 309
Hin1II	CATG	6 cut(s)	88, 110, 196, 303, 314, 377
Hin6I	GCGC	2 cut(s)	81, 307
HinP1I	GCGC	2 cut(s)	81, 307
HincII	GTYRAC	1 cut(s)	199
HindII	GTYRAC	1 cut(s)	199
HinfI	GANTC	1 cut(s)	19
Hpy166II	GTNNAC	1 cut(s)	199
Hpy188III	TCNNGA	3 cut(s)	23, 76, 224
Hpy8I	GTNNAC	1 cut(s)	199
HpyAV	CCTTC	2 cut(s)	22, 282
HpyCH4IV	ACGT	1 cut(s)	66
HpyCH4V	TGCA	5 cut(s)	8, 192, 236, 299, 323
HpyF10VI	GCNNNNNNNGC	3 cut(s)	89, 98, 335
HpySE526I	ACGT	1 cut(s)	66
Hsp92II	CATG	6 cut(s)	88, 110, 196, 303, 314, 377
HspAI	GCGC	2 cut(s)	81, 307
Kzo9I	GATC	1 cut(s)	361
LmnI	GCTCC	3 cut(s)	78, 148, 377
LpnPI	CCDG	6 cut(s)	61, 156, 183, 201, 209, 379
Lsp1109I	GCAGC	2 cut(s)	79, 220
MaeI	CTAG	1 cut(s)	23
MaeII	ACGT	1 cut(s)	66
MalI	GATC	1 cut(s)	363
MboI	GATC	1 cut(s)	361
MflI	RGATCY	1 cut(s)	361
MhlI	GDGCHC	1 cut(s)	289
MluCI	AATT	2 cut(s)	46, 258
MnlI	CCTC	3 cut(s)	31, 115, 220
MseI	TTAA	1 cut(s)	45
MspR9I	CCNGG	1 cut(s)	171
MvaI	CCWGG	1 cut(s)	171
MvnI	CGCG	1 cut(s)	307
MwoI	GCNNNNNNNGC	3 cut(s)	89, 98, 335
NcoI	CCATGG	1 cut(s)	310
NdeII	GATC	1 cut(s)	361
NlaIII	CATG	6 cut(s)	88, 110, 196, 303, 314, 377
NlaIV	GGNNCC	1 cut(s)	363
NspI	RCATGY	1 cut(s)	303
PfeI	GAWTC	1 cut(s)	19
PkrI	GCNGC	2 cut(s)	94, 235
Psp6I	CCWGG	1 cut(s)	169
PspGI	CCWGG	1 cut(s)	169
PspN4I	GGNNCC	1 cut(s)	363
PstI	CTGCAG	1 cut(s)	238
PsuI	RGATCY	1 cut(s)	361
RsaI	GTAC	1 cut(s)	304
RsaNI	GTAC	1 cut(s)	303
SaqAI	TTAA	1 cut(s)	45
SatI	GCNGC	2 cut(s)	93, 234
Sau3AI	GATC	1 cut(s)	361
ScrFI	CCNGG	1 cut(s)	171
SduI	GDGCHC	1 cut(s)	289
SetI	ASST	5 cut(s)	42, 69, 220, 235, 243
SfcI	CTRYAG	1 cut(s)	234
Sse9I	AATT	2 cut(s)	46, 258
SspI	AATATT	2 cut(s)	132, 319
SspMI	CTAG	1 cut(s)	23
StyD4I	CCNGG	1 cut(s)	169
StyI	CCWWGG	1 cut(s)	310
TaiI	ACGT	1 cut(s)	69
TaqI	TCGA	1 cut(s)	354
TasI	AATT	2 cut(s)	46, 258
TfiI	GAWTC	1 cut(s)	19
Tru1I	TTAA	1 cut(s)	45
Tru9I	TTAA	1 cut(s)	45
TseI	GCWGC	2 cut(s)	92, 233
XbaI	TCTAGA	1 cut(s)	22
XceI	RCATGY	1 cut(s)	303
XspI	CTAG	1 cut(s)	23

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.