Rmu_sc0000936.1_g000009

Pentatricopeptide repeat-containing protein

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0000936.1
Physical Location & Seq
Forward (+)
47797 .. 49197
1401 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0000936.1_g000009.1.cds

Sequence Viewer

Length: 1401 bp
atggcaactctaggcaccccagttatctctttcccacgtcatcccaccactccctccccaaccgtcaataacgaccttcgcttcccaacccaaccgcttctcccagtgatagaccaatgcaccaccatcaaccagctcaagcaagtccatgcccaaatgctcaaaacagccctattctttgacccttattccgctagtaagctgatcacagctgctgctctctcctccttctcgagcgtcgactatgcacgccaagtgttcgacgaaattcctgagccaaatctgttcacttggaacgccctcattcgcgcgtacgcctccagccccgacccagttgaaagcattctcctatttctgcagatgctcgacgagtgtgatgagtgccccaataagtttactttcccttttttgctcaaggccgcctcggagctccgggcttccaaggttgggagaggttttcatgccatggtgataaaagcccagctgggttcggatgtttacattgttaattcgctcattcacttttatgggtcgtgcggggatttggatttggcgcgtttggtgtttttgaagacttataagaaggatgttgttacttggaattcagttatcacggctttcgctcaggggaactgtcccgaggtggcgttggagttgtttaaggaaatggaggcggagaatatgaagccgaatgatgtcaccatggttagtgtcttgtcagcttgcgcaaagaaggcggatttggagtttgggaggtgggtttgtttgaatgttgaaaggcatggagttgaagagaacttgactttgaataatgctatgttagatatgtatgtgaaatgtgggagtgttgaagatgcagagagattgtttggaaggatgccggagaaggacgttgtgtcatggactactatgcttgatgggtatgctcggatggggaaatatgatgaggctaggtgtgtttttgctgccatgcctagtcaggatattgctgcgtggaatgtcctcatttcatcttatgaacagaatggcaggccgaaagaggctttagctgtcttccatgagttgcagaagaacaagggtcccaagcctgatgaggttactctagttagtactctggcagcgtgtgctcaattgggagcgattgatcttggcggctggatacatgtttacgtaaagaagcagggaatgaagttgaattgtcacctcacaacctcgcttatcgacatgtatgcaaaatgcggaaatctagagaaggcacttgaggtttttaattcggtggagatgagagacgtatttgtctggagcgccatgattgctgctttggcaatgcatggtcaggggagggatgcattgcactttttctcaaaaatgctagaagccaaatgctgtgacatttactaa

Protein Analysis

466

Amino Acids

51.93

Weight (kDa)

5.65

Isoelectric Point (pI)

39.67

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 579
AasI GACNNNNNNGTC 1 cut(s) 1295
Acc16I TGCGCA 1 cut(s) 727
AccB1I GGYRCC 1 cut(s) 14
AccI GTMKAC 1 cut(s) 240
AccII CGCG 3 cut(s) 309, 311, 556
AciI CCGC 8 cut(s) 95, 192, 420, 537, 674, 737, 1152, 1239
AcsI RAATTY 2 cut(s) 267, 601
AfaI GTAC 2 cut(s) 314, 1111
AfiI CCNNNNNNNGG 1 cut(s) 447
AflIII ACRYGT 2 cut(s) 1162, 1224
AgsI TTSAA 8 cut(s) 338, 571, 769, 776, 791, 808, 851, 1195
AhdI GACNNNNNGTC 1 cut(s) 895
AjiI CACGTC 1 cut(s) 38
AjuI GAANNNNNNNTTGG 2 cut(s) 725, 757
AluBI AGCT 7 cut(s) 136, 202, 212, 430, 484, 722, 1049
AluI AGCT 7 cut(s) 136, 202, 212, 430, 484, 722, 1049
Alw21I GWGCWC 2 cut(s) 432, 1129
Alw26I GTCTC 1 cut(s) 1281
AlwNI CAGNNNCTG 1 cut(s) 215
Ama87I CYCGRG 2 cut(s) 232, 638
AoxI GGCC 2 cut(s) 417, 1031
ApeKI GCWGC 6 cut(s) 212, 215, 965, 989, 1118, 1316
ApoI RAATTY 2 cut(s) 267, 601
Asp700I GAANNNNTTC 1 cut(s) 342
AspLEI GCGC 4 cut(s) 311, 556, 728, 1307
AspS9I GGNCC 1 cut(s) 1079
AsuC2I CCSGG 1 cut(s) 434
AsuHPI GGTGA 3 cut(s) 481, 691, 1193
AvaI CYCGRG 2 cut(s) 232, 638
AvaII GGWCC 1 cut(s) 1079
BaeGI GKGCMC 1 cut(s) 386
BanI GGYRCC 1 cut(s) 14
BanII GRGCYC 1 cut(s) 432
BbsI GAAGAC 2 cut(s) 578, 1045
Bbv12I GWGCWC 2 cut(s) 432, 1129
BbvI GCAGC 6 cut(s) 199, 202, 952, 976, 1130, 1303
BccI CCATC 3 cut(s) 134, 911, 925
BceAI ACGGC 1 cut(s) 630
BcgI CGANNNNNNTGC 2 cut(s) 1211, 1245
BciVI GTATCC 1 cut(s) 1152
BclI TGATCA 1 cut(s) 204
BcnI CCSGG 1 cut(s) 434
BcoDI GTCTC 1 cut(s) 1281
BfaI CTAG 7 cut(s) 11, 195, 951, 975, 1103, 1247, 1373
BfmI CTRYAG 1 cut(s) 356
BfoI RGCGCY 1 cut(s) 1308
BfuI GTATCC 1 cut(s) 1152
BisI GCNGC 8 cut(s) 213, 216, 420, 966, 990, 1119, 1153, 1317
BlsI GCNGC 8 cut(s) 214, 217, 421, 967, 991, 1120, 1154, 1318
BmcAI AGTACT 1 cut(s) 1111
Bme1390I CCNGG 1 cut(s) 434
Bme18I GGWCC 1 cut(s) 1079
BmeRI GACNNNNNGTC 1 cut(s) 895
BmeT110I CYCGRG 2 cut(s) 232, 638
BmgBI CACGTC 1 cut(s) 38
BmgT120I GGNCC 1 cut(s) 1079
BmiI GGNNCC 3 cut(s) 16, 1080, 1081
BmrFI CCNGG 1 cut(s) 434
BmrI ACTGGG 3 cut(s) 14, 98, 326
BmsI GCATC 4 cut(s) 351, 844, 867, 1336
BmuI ACTGGG 3 cut(s) 14, 98, 326
BpiI GAAGAC 2 cut(s) 578, 1045
BpmI CTGGAG 2 cut(s) 304, 1321
Bpu10I CCTNAGC 2 cut(s) 273, 624
BpuEI CTTGAG 3 cut(s) 122, 398, 1280
BpuMI CCSGG 1 cut(s) 434
BsaAI YACGTR 1 cut(s) 1171
BsaJI CCNNGG 5 cut(s) 423, 441, 465, 639, 702
BsaXI ACNNNNNCTCC 2 cut(s) 84, 114
Bsc4I CCNNNNNNNGG 1 cut(s) 447
Bse1I ACTGG 3 cut(s) 20, 104, 332
Bse3DI GCAATG 2 cut(s) 1332, 1349
BseDI CCNNGG 5 cut(s) 423, 441, 465, 639, 702
BseGI GGATG 6 cut(s) 40, 499, 592, 882, 936, 1351
BseLI CCNNNNNNNGG 1 cut(s) 447
BseMI GCAATG 2 cut(s) 1332, 1349
BseMII CTCAG 2 cut(s) 264, 638
BseNI ACTGG 3 cut(s) 20, 104, 332
BseRI GAGGAG 1 cut(s) 214
BseSI GKGCMC 1 cut(s) 386
BseXI GCAGC 6 cut(s) 199, 202, 952, 976, 1130, 1303
BseYI CCCAGC 2 cut(s) 480, 484
Bsh1236I CGCG 3 cut(s) 309, 311, 556
BshFI GGCC 2 cut(s) 419, 1033
BshNI GGYRCC 1 cut(s) 14
BsiHKAI GWGCWC 2 cut(s) 432, 1129
BsiHKCI CYCGRG 2 cut(s) 232, 638
BsiSI CCGG 2 cut(s) 433, 881
BsiWI CGTACG 1 cut(s) 312
BslFI GGGAC 2 cut(s) 621, 1065
BslI CCNNNNNNNGG 1 cut(s) 447
BsmAI GTCTC 1 cut(s) 1281
BsmBI CGTCTC 1 cut(s) 1281
BsmFI GGGAC 2 cut(s) 621, 1065
BsmI GAATGC 1 cut(s) 342
BsnI GGCC 2 cut(s) 419, 1033
BsoBI CYCGRG 2 cut(s) 232, 638
Bsp1286I GDGCHC 3 cut(s) 386, 432, 1129
Bsp143I GATC 2 cut(s) 204, 1144
Bsp19I CCATGG 2 cut(s) 465, 702
BspACI CCGC 8 cut(s) 95, 192, 420, 537, 674, 737, 1152, 1239
BspANI GGCC 2 cut(s) 419, 1033
BspCNI CTCAG 2 cut(s) 265, 637
BspFNI CGCG 3 cut(s) 309, 311, 556
BspLI GGNNCC 3 cut(s) 16, 1080, 1081
BspMAI CTGCAG 1 cut(s) 360
BspT107I GGYRCC 1 cut(s) 14
BsrDI GCAATG 2 cut(s) 1332, 1349
BsrI ACTGG 3 cut(s) 20, 104, 332
BssECI CCNNGG 5 cut(s) 423, 441, 465, 639, 702
BssMI GATC 2 cut(s) 204, 1144
BssT1I CCWWGG 3 cut(s) 441, 465, 702
Bst4CI ACNGT 2 cut(s) 64, 635
Bst6I CTCTTC 1 cut(s) 786
BstAPI GCANNNNNTGC 1 cut(s) 1124
BstBAI YACGTR 1 cut(s) 1171
BstC8I GCNNGC 3 cut(s) 250, 724, 1031
BstDEI CTNAG 2 cut(s) 273, 624
BstDSI CCRYGG 2 cut(s) 465, 702
BstF5I GGATG 6 cut(s) 40, 499, 592, 882, 936, 1351
BstFNI CGCG 3 cut(s) 309, 311, 556
BstH2I RGCGCY 1 cut(s) 1308
BstHHI GCGC 4 cut(s) 311, 556, 728, 1307
BstKTI GATC 2 cut(s) 207, 1147
BstMAI GTCTC 1 cut(s) 1281
BstMBI GATC 2 cut(s) 204, 1144
BstMWI GCNNNNNNNGC 4 cut(s) 734, 1124, 1313, 1322
BstNSI RCATGY 2 cut(s) 1166, 1228
BstSCI CCNGG 1 cut(s) 432
BstSFI CTRYAG 1 cut(s) 356
BstSLI GKGCMC 1 cut(s) 386
BstSNI TACGTA 1 cut(s) 1171
BstUI CGCG 3 cut(s) 309, 311, 556
BstV1I GCAGC 6 cut(s) 199, 202, 952, 976, 1130, 1303
BstV2I GAAGAC 2 cut(s) 578, 1045
BsuI GTATCC 1 cut(s) 1152
BsuRI GGCC 2 cut(s) 419, 1033
BtgI CCRYGG 2 cut(s) 465, 702
BtrI CACGTC 1 cut(s) 38
BtsCI GGATG 6 cut(s) 40, 499, 592, 882, 936, 1351
BtsIMutI CAGTG 1 cut(s) 111
Cac8I GCNNGC 3 cut(s) 250, 724, 1031
CaiI CAGNNNCTG 1 cut(s) 215
CfoI GCGC 4 cut(s) 311, 556, 728, 1307
Cfr13I GGNCC 1 cut(s) 1079
CseI GACGC 1 cut(s) 226
Csp6I GTAC 2 cut(s) 313, 1110
CviQI GTAC 2 cut(s) 313, 1110
DdeI CTNAG 2 cut(s) 273, 624
DpnI GATC 2 cut(s) 206, 1146
DpnII GATC 2 cut(s) 204, 1144
DrdI GACNNNNNNGTC 1 cut(s) 1295
DriI GACNNNNNGTC 1 cut(s) 895
DseDI GACNNNNNNGTC 1 cut(s) 1295
Eam1104I CTCTTC 1 cut(s) 786
Eam1105I GACNNNNNGTC 1 cut(s) 895
EarI CTCTTC 1 cut(s) 786
EciI GGCGGA 2 cut(s) 689, 752
Ecl136II GAGCTC 1 cut(s) 430
Eco105I TACGTA 1 cut(s) 1171
Eco130I CCWWGG 3 cut(s) 441, 465, 702
Eco24I GRGCYC 1 cut(s) 432
Eco47I GGWCC 1 cut(s) 1079
Eco53kI GAGCTC 1 cut(s) 430
Eco88I CYCGRG 2 cut(s) 232, 638
EcoICRI GAGCTC 1 cut(s) 430
EcoO109I RGGNCCY 1 cut(s) 1079
EcoRI GAATTC 1 cut(s) 601
EcoT14I CCWWGG 3 cut(s) 441, 465, 702
EcoT22I ATGCAT 2 cut(s) 1332, 1351
EcoT38I GRGCYC 1 cut(s) 432
ErhI CCWWGG 3 cut(s) 441, 465, 702
Esp3I CGTCTC 1 cut(s) 1281
FaqI GGGAC 2 cut(s) 621, 1065
FauI CCCGC 1 cut(s) 530
FbaI TGATCA 1 cut(s) 204
FblI GTMKAC 1 cut(s) 240
Fnu4HI GCNGC 8 cut(s) 213, 216, 420, 966, 990, 1119, 1153, 1317
FokI GGATG 6 cut(s) 27, 506, 599, 889, 943, 1358
FriOI GRGCYC 1 cut(s) 432
Fsp4HI GCNGC 8 cut(s) 213, 216, 420, 966, 990, 1119, 1153, 1317
FspBI CTAG 7 cut(s) 11, 195, 951, 975, 1103, 1247, 1373
FspI TGCGCA 1 cut(s) 727
GlaI GCGC 4 cut(s) 310, 555, 727, 1306
GluI GCNGC 8 cut(s) 213, 216, 420, 966, 990, 1119, 1153, 1317
GsaI CCCAGC 2 cut(s) 484, 488
GsuI CTGGAG 2 cut(s) 304, 1321
HaeII RGCGCY 1 cut(s) 1308
HaeIII GGCC 2 cut(s) 419, 1033
HapII CCGG 2 cut(s) 433, 881
HgaI GACGC 1 cut(s) 226
HhaI GCGC 4 cut(s) 311, 556, 728, 1307
Hin6I GCGC 4 cut(s) 309, 554, 726, 1305
HinP1I GCGC 4 cut(s) 309, 554, 726, 1305
HincII GTYRAC 1 cut(s) 241
HindII GTYRAC 1 cut(s) 241
HpaII CCGG 2 cut(s) 433, 881
HphI GGTGA 3 cut(s) 481, 691, 1193
Hpy166II GTNNAC 5 cut(s) 241, 288, 396, 499, 1168
Hpy188I TCNGA 3 cut(s) 427, 493, 930
Hpy188III TCNNGA 6 cut(s) 232, 272, 638, 980, 1247, 1300
Hpy8I GTNNAC 5 cut(s) 241, 288, 396, 499, 1168
Hpy99I CGWCG 3 cut(s) 242, 266, 371
HpyAV CCTTC 7 cut(s) 86, 238, 577, 727, 867, 880, 1246
HpyCH4III ACNGT 2 cut(s) 64, 635
HpyCH4IV ACGT 4 cut(s) 37, 891, 1170, 1290
HpyCH4V TGCA 9 cut(s) 120, 248, 358, 857, 1066, 1232, 1330, 1349, 1354
HpyF10VI GCNNNNNNNGC 4 cut(s) 734, 1124, 1313, 1322
HpyF3I CTNAG 2 cut(s) 273, 624
HpySE526I ACGT 4 cut(s) 37, 891, 1170, 1290
HspAI GCGC 4 cut(s) 309, 554, 726, 1305
KflI GGGWCCC 1 cut(s) 1079
Ksp22I TGATCA 1 cut(s) 204
Kzo9I GATC 2 cut(s) 204, 1144
LmnI GCTCC 4 cut(s) 427, 435, 1136, 1302
Lsp1109I GCAGC 6 cut(s) 199, 202, 952, 976, 1130, 1303
LweI GCATC 4 cut(s) 351, 844, 867, 1336
MaeI CTAG 7 cut(s) 11, 195, 951, 975, 1103, 1247, 1373
MaeII ACGT 4 cut(s) 37, 891, 1170, 1290
MaeIII GTNAC 5 cut(s) 592, 697, 1096, 1199, 1388
MalI GATC 2 cut(s) 206, 1146
MboI GATC 2 cut(s) 204, 1144
MboII GAAGA 5 cut(s) 583, 803, 863, 1045, 1081
MfeI CAATTG 1 cut(s) 1130
MhlI GDGCHC 3 cut(s) 386, 432, 1129
MluCI AATT 6 cut(s) 267, 508, 601, 1130, 1195, 1270
MmeI TCCRAC 1 cut(s) 630
Mph1103I ATGCAT 2 cut(s) 1332, 1351
MroXI GAANNNNTTC 1 cut(s) 342
MseI TTAA 3 cut(s) 507, 660, 1269
MslI CAYNNNNRTG 1 cut(s) 525
MspA1I CMGCKG 2 cut(s) 212, 484
MspI CCGG 2 cut(s) 433, 881
MspR9I CCNGG 1 cut(s) 434
MunI CAATTG 1 cut(s) 1130
Mva1269I GAATGC 1 cut(s) 342
MvnI CGCG 3 cut(s) 309, 311, 556
MwoI GCNNNNNNNGC 4 cut(s) 734, 1124, 1313, 1322
NciI CCSGG 1 cut(s) 434
NcoI CCATGG 2 cut(s) 465, 702
NdeII GATC 2 cut(s) 204, 1144
NlaIV GGNNCC 3 cut(s) 16, 1080, 1081
NmuCI GTSAC 3 cut(s) 697, 1199, 1388
NsbI TGCGCA 1 cut(s) 727
NsiI ATGCAT 2 cut(s) 1332, 1351
NspI RCATGY 2 cut(s) 1166, 1228
PaeR7I CTCGAG 1 cut(s) 232
PciI ACATGT 2 cut(s) 1162, 1224
PctI GAATGC 1 cut(s) 342
PdmI GAANNNNTTC 1 cut(s) 342
Pfl23II CGTACG 1 cut(s) 312
PkrI GCNGC 8 cut(s) 214, 217, 421, 967, 991, 1120, 1154, 1318
Ppu21I YACGTR 1 cut(s) 1171
PpuMI RGGWCCY 1 cut(s) 1079
PscI ACATGT 2 cut(s) 1162, 1224
PsiI TTATAA 1 cut(s) 579
Psp124BI GAGCTC 1 cut(s) 432
Psp5II RGGWCCY 1 cut(s) 1079
PspFI CCCAGC 2 cut(s) 480, 484
PspLI CGTACG 1 cut(s) 312
PspN4I GGNNCC 3 cut(s) 16, 1080, 1081
PspPI GGNCC 1 cut(s) 1079
PspPPI RGGWCCY 1 cut(s) 1079
PstI CTGCAG 1 cut(s) 360
PstNI CAGNNNCTG 1 cut(s) 215
PvuII CAGCTG 2 cut(s) 212, 484
RsaI GTAC 2 cut(s) 314, 1111
RsaNI GTAC 2 cut(s) 313, 1110
RseI CAYNNNNRTG 1 cut(s) 525
SacI GAGCTC 1 cut(s) 432
SalI GTCGAC 1 cut(s) 239
SaqAI TTAA 3 cut(s) 507, 660, 1269
SatI GCNGC 8 cut(s) 213, 216, 420, 966, 990, 1119, 1153, 1317
Sau3AI GATC 2 cut(s) 204, 1144
Sau96I GGNCC 1 cut(s) 1079
ScaI AGTACT 1 cut(s) 1111
ScrFI CCNGG 1 cut(s) 434
SduI GDGCHC 3 cut(s) 386, 432, 1129
SfaNI GCATC 4 cut(s) 351, 844, 867, 1336
SfcI CTRYAG 1 cut(s) 356
Sfr274I CTCGAG 1 cut(s) 232
SinI GGWCC 1 cut(s) 1079
SlaI CTCGAG 1 cut(s) 232
SmiMI CAYNNNNRTG 1 cut(s) 525
SmlI CTYRAG 4 cut(s) 137, 232, 413, 1259
SmoI CTYRAG 4 cut(s) 137, 232, 413, 1259
SnaBI TACGTA 1 cut(s) 1171
Sse9I AATT 6 cut(s) 267, 508, 601, 1130, 1195, 1270
SsiI CCGC 8 cut(s) 95, 192, 420, 537, 674, 737, 1152, 1239
SspMI CTAG 7 cut(s) 11, 195, 951, 975, 1103, 1247, 1373
SstI GAGCTC 1 cut(s) 432
StyD4I CCNGG 1 cut(s) 432
StyI CCWWGG 3 cut(s) 441, 465, 702
TaaI ACNGT 2 cut(s) 64, 635
TaiI ACGT 4 cut(s) 40, 894, 1173, 1293
TaqI TCGA 5 cut(s) 233, 240, 261, 366, 1221
TasI AATT 6 cut(s) 267, 508, 601, 1130, 1195, 1270
TatI WGTACW 1 cut(s) 1109
TauI GCSGC 2 cut(s) 422, 1155
Tru1I TTAA 3 cut(s) 507, 660, 1269
Tru9I TTAA 3 cut(s) 507, 660, 1269
TscAI CASTG 1 cut(s) 111
TseFI GTSAC 3 cut(s) 697, 1199, 1388
TseI GCWGC 6 cut(s) 212, 215, 965, 989, 1118, 1316
Tsp45I GTSAC 3 cut(s) 697, 1199, 1388
TspDTI ATGAA 5 cut(s) 449, 698, 999, 1032, 1202
TspRI CASTG 1 cut(s) 111
VpaK11BI GGWCC 1 cut(s) 1079
XapI RAATTY 2 cut(s) 267, 601
XbaI TCTAGA 1 cut(s) 1246
XceI RCATGY 2 cut(s) 1166, 1228
XhoI CTCGAG 1 cut(s) 232
XmiI GTMKAC 1 cut(s) 240
XmnI GAANNNNTTC 1 cut(s) 342
XspI CTAG 7 cut(s) 11, 195, 951, 975, 1103, 1247, 1373
ZrmI AGTACT 1 cut(s) 1111
Zsp2I ATGCAT 2 cut(s) 1332, 1351
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.