Pentatricopeptide repeat-containing protein
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT2G29760 |
| fragaria_vesca | FvH4_3g38420 |
| malus_domestica | MD03G1072100.v1.1 MD11G1076100.v1.1 MD11G1076300.v1.1 MD11G1076700.v1.1 |
| prunus_persica | Prupe.6G058800_v2.0.a1 |
| pyrus_communis | pycom03g05830 pycom12g05280 |
| rosa_chinensis | RchiOBHm_Chr5g0069041 RchiOBHm_Chr5g0069081 |
| rosa_laevigata | RLG00000017743 RLG00000036033 |
| rosa_multiflora | Rmu_co8508453.1_g000001 Rmu_sc0000853.1_g000010 Rmu_sc0000853.1_g000011 Rmu_sc0000936.1_g000009 |
| rosa_roxburghii | Rroxscaffold_1G00011680 |
| rosa_rugosa | Rorug05G0395900 |
| rosa_samantha | Rh5AG452500 Rh5AG482500 Rh5BG471800 Rh5BG503600 Rh5CG494200 |
| rosa_wichuraiana | Rw0G006080 Rw5G042280 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 579 |
| AasI | GACNNNNNNGTC | 1 cut(s) | 1295 |
| Acc16I | TGCGCA | 1 cut(s) | 727 |
| AccB1I | GGYRCC | 1 cut(s) | 14 |
| AccI | GTMKAC | 1 cut(s) | 240 |
| AccII | CGCG | 3 cut(s) | 309, 311, 556 |
| AciI | CCGC | 8 cut(s) | 95, 192, 420, 537, 674, 737, 1152, 1239 |
| AcsI | RAATTY | 2 cut(s) | 267, 601 |
| AfaI | GTAC | 2 cut(s) | 314, 1111 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 447 |
| AflIII | ACRYGT | 2 cut(s) | 1162, 1224 |
| AgsI | TTSAA | 8 cut(s) | 338, 571, 769, 776, 791, 808, 851, 1195 |
| AhdI | GACNNNNNGTC | 1 cut(s) | 895 |
| AjiI | CACGTC | 1 cut(s) | 38 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 725, 757 |
| AluBI | AGCT | 7 cut(s) | 136, 202, 212, 430, 484, 722, 1049 |
| AluI | AGCT | 7 cut(s) | 136, 202, 212, 430, 484, 722, 1049 |
| Alw21I | GWGCWC | 2 cut(s) | 432, 1129 |
| Alw26I | GTCTC | 1 cut(s) | 1281 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 215 |
| Ama87I | CYCGRG | 2 cut(s) | 232, 638 |
| AoxI | GGCC | 2 cut(s) | 417, 1031 |
| ApeKI | GCWGC | 6 cut(s) | 212, 215, 965, 989, 1118, 1316 |
| ApoI | RAATTY | 2 cut(s) | 267, 601 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 342 |
| AspLEI | GCGC | 4 cut(s) | 311, 556, 728, 1307 |
| AspS9I | GGNCC | 1 cut(s) | 1079 |
| AsuC2I | CCSGG | 1 cut(s) | 434 |
| AsuHPI | GGTGA | 3 cut(s) | 481, 691, 1193 |
| AvaI | CYCGRG | 2 cut(s) | 232, 638 |
| AvaII | GGWCC | 1 cut(s) | 1079 |
| BaeGI | GKGCMC | 1 cut(s) | 386 |
| BanI | GGYRCC | 1 cut(s) | 14 |
| BanII | GRGCYC | 1 cut(s) | 432 |
| BbsI | GAAGAC | 2 cut(s) | 578, 1045 |
| Bbv12I | GWGCWC | 2 cut(s) | 432, 1129 |
| BbvI | GCAGC | 6 cut(s) | 199, 202, 952, 976, 1130, 1303 |
| BccI | CCATC | 3 cut(s) | 134, 911, 925 |
| BceAI | ACGGC | 1 cut(s) | 630 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 1211, 1245 |
| BciVI | GTATCC | 1 cut(s) | 1152 |
| BclI | TGATCA | 1 cut(s) | 204 |
| BcnI | CCSGG | 1 cut(s) | 434 |
| BcoDI | GTCTC | 1 cut(s) | 1281 |
| BfaI | CTAG | 7 cut(s) | 11, 195, 951, 975, 1103, 1247, 1373 |
| BfmI | CTRYAG | 1 cut(s) | 356 |
| BfoI | RGCGCY | 1 cut(s) | 1308 |
| BfuI | GTATCC | 1 cut(s) | 1152 |
| BisI | GCNGC | 8 cut(s) | 213, 216, 420, 966, 990, 1119, 1153, 1317 |
| BlsI | GCNGC | 8 cut(s) | 214, 217, 421, 967, 991, 1120, 1154, 1318 |
| BmcAI | AGTACT | 1 cut(s) | 1111 |
| Bme1390I | CCNGG | 1 cut(s) | 434 |
| Bme18I | GGWCC | 1 cut(s) | 1079 |
| BmeRI | GACNNNNNGTC | 1 cut(s) | 895 |
| BmeT110I | CYCGRG | 2 cut(s) | 232, 638 |
| BmgBI | CACGTC | 1 cut(s) | 38 |
| BmgT120I | GGNCC | 1 cut(s) | 1079 |
| BmiI | GGNNCC | 3 cut(s) | 16, 1080, 1081 |
| BmrFI | CCNGG | 1 cut(s) | 434 |
| BmrI | ACTGGG | 3 cut(s) | 14, 98, 326 |
| BmsI | GCATC | 4 cut(s) | 351, 844, 867, 1336 |
| BmuI | ACTGGG | 3 cut(s) | 14, 98, 326 |
| BpiI | GAAGAC | 2 cut(s) | 578, 1045 |
| BpmI | CTGGAG | 2 cut(s) | 304, 1321 |
| Bpu10I | CCTNAGC | 2 cut(s) | 273, 624 |
| BpuEI | CTTGAG | 3 cut(s) | 122, 398, 1280 |
| BpuMI | CCSGG | 1 cut(s) | 434 |
| BsaAI | YACGTR | 1 cut(s) | 1171 |
| BsaJI | CCNNGG | 5 cut(s) | 423, 441, 465, 639, 702 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 84, 114 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 447 |
| Bse1I | ACTGG | 3 cut(s) | 20, 104, 332 |
| Bse3DI | GCAATG | 2 cut(s) | 1332, 1349 |
| BseDI | CCNNGG | 5 cut(s) | 423, 441, 465, 639, 702 |
| BseGI | GGATG | 6 cut(s) | 40, 499, 592, 882, 936, 1351 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 447 |
| BseMI | GCAATG | 2 cut(s) | 1332, 1349 |
| BseMII | CTCAG | 2 cut(s) | 264, 638 |
| BseNI | ACTGG | 3 cut(s) | 20, 104, 332 |
| BseRI | GAGGAG | 1 cut(s) | 214 |
| BseSI | GKGCMC | 1 cut(s) | 386 |
| BseXI | GCAGC | 6 cut(s) | 199, 202, 952, 976, 1130, 1303 |
| BseYI | CCCAGC | 2 cut(s) | 480, 484 |
| Bsh1236I | CGCG | 3 cut(s) | 309, 311, 556 |
| BshFI | GGCC | 2 cut(s) | 419, 1033 |
| BshNI | GGYRCC | 1 cut(s) | 14 |
| BsiHKAI | GWGCWC | 2 cut(s) | 432, 1129 |
| BsiHKCI | CYCGRG | 2 cut(s) | 232, 638 |
| BsiSI | CCGG | 2 cut(s) | 433, 881 |
| BsiWI | CGTACG | 1 cut(s) | 312 |
| BslFI | GGGAC | 2 cut(s) | 621, 1065 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 447 |
| BsmAI | GTCTC | 1 cut(s) | 1281 |
| BsmBI | CGTCTC | 1 cut(s) | 1281 |
| BsmFI | GGGAC | 2 cut(s) | 621, 1065 |
| BsmI | GAATGC | 1 cut(s) | 342 |
| BsnI | GGCC | 2 cut(s) | 419, 1033 |
| BsoBI | CYCGRG | 2 cut(s) | 232, 638 |
| Bsp1286I | GDGCHC | 3 cut(s) | 386, 432, 1129 |
| Bsp143I | GATC | 2 cut(s) | 204, 1144 |
| Bsp19I | CCATGG | 2 cut(s) | 465, 702 |
| BspACI | CCGC | 8 cut(s) | 95, 192, 420, 537, 674, 737, 1152, 1239 |
| BspANI | GGCC | 2 cut(s) | 419, 1033 |
| BspCNI | CTCAG | 2 cut(s) | 265, 637 |
| BspFNI | CGCG | 3 cut(s) | 309, 311, 556 |
| BspLI | GGNNCC | 3 cut(s) | 16, 1080, 1081 |
| BspMAI | CTGCAG | 1 cut(s) | 360 |
| BspT107I | GGYRCC | 1 cut(s) | 14 |
| BsrDI | GCAATG | 2 cut(s) | 1332, 1349 |
| BsrI | ACTGG | 3 cut(s) | 20, 104, 332 |
| BssECI | CCNNGG | 5 cut(s) | 423, 441, 465, 639, 702 |
| BssMI | GATC | 2 cut(s) | 204, 1144 |
| BssT1I | CCWWGG | 3 cut(s) | 441, 465, 702 |
| Bst4CI | ACNGT | 2 cut(s) | 64, 635 |
| Bst6I | CTCTTC | 1 cut(s) | 786 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 1124 |
| BstBAI | YACGTR | 1 cut(s) | 1171 |
| BstC8I | GCNNGC | 3 cut(s) | 250, 724, 1031 |
| BstDEI | CTNAG | 2 cut(s) | 273, 624 |
| BstDSI | CCRYGG | 2 cut(s) | 465, 702 |
| BstF5I | GGATG | 6 cut(s) | 40, 499, 592, 882, 936, 1351 |
| BstFNI | CGCG | 3 cut(s) | 309, 311, 556 |
| BstH2I | RGCGCY | 1 cut(s) | 1308 |
| BstHHI | GCGC | 4 cut(s) | 311, 556, 728, 1307 |
| BstKTI | GATC | 2 cut(s) | 207, 1147 |
| BstMAI | GTCTC | 1 cut(s) | 1281 |
| BstMBI | GATC | 2 cut(s) | 204, 1144 |
| BstMWI | GCNNNNNNNGC | 4 cut(s) | 734, 1124, 1313, 1322 |
| BstNSI | RCATGY | 2 cut(s) | 1166, 1228 |
| BstSCI | CCNGG | 1 cut(s) | 432 |
| BstSFI | CTRYAG | 1 cut(s) | 356 |
| BstSLI | GKGCMC | 1 cut(s) | 386 |
| BstSNI | TACGTA | 1 cut(s) | 1171 |
| BstUI | CGCG | 3 cut(s) | 309, 311, 556 |
| BstV1I | GCAGC | 6 cut(s) | 199, 202, 952, 976, 1130, 1303 |
| BstV2I | GAAGAC | 2 cut(s) | 578, 1045 |
| BsuI | GTATCC | 1 cut(s) | 1152 |
| BsuRI | GGCC | 2 cut(s) | 419, 1033 |
| BtgI | CCRYGG | 2 cut(s) | 465, 702 |
| BtrI | CACGTC | 1 cut(s) | 38 |
| BtsCI | GGATG | 6 cut(s) | 40, 499, 592, 882, 936, 1351 |
| BtsIMutI | CAGTG | 1 cut(s) | 111 |
| Cac8I | GCNNGC | 3 cut(s) | 250, 724, 1031 |
| CaiI | CAGNNNCTG | 1 cut(s) | 215 |
| CfoI | GCGC | 4 cut(s) | 311, 556, 728, 1307 |
| Cfr13I | GGNCC | 1 cut(s) | 1079 |
| CseI | GACGC | 1 cut(s) | 226 |
| Csp6I | GTAC | 2 cut(s) | 313, 1110 |
| CviQI | GTAC | 2 cut(s) | 313, 1110 |
| DdeI | CTNAG | 2 cut(s) | 273, 624 |
| DpnI | GATC | 2 cut(s) | 206, 1146 |
| DpnII | GATC | 2 cut(s) | 204, 1144 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 1295 |
| DriI | GACNNNNNGTC | 1 cut(s) | 895 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 1295 |
| Eam1104I | CTCTTC | 1 cut(s) | 786 |
| Eam1105I | GACNNNNNGTC | 1 cut(s) | 895 |
| EarI | CTCTTC | 1 cut(s) | 786 |
| EciI | GGCGGA | 2 cut(s) | 689, 752 |
| Ecl136II | GAGCTC | 1 cut(s) | 430 |
| Eco105I | TACGTA | 1 cut(s) | 1171 |
| Eco130I | CCWWGG | 3 cut(s) | 441, 465, 702 |
| Eco24I | GRGCYC | 1 cut(s) | 432 |
| Eco47I | GGWCC | 1 cut(s) | 1079 |
| Eco53kI | GAGCTC | 1 cut(s) | 430 |
| Eco88I | CYCGRG | 2 cut(s) | 232, 638 |
| EcoICRI | GAGCTC | 1 cut(s) | 430 |
| EcoO109I | RGGNCCY | 1 cut(s) | 1079 |
| EcoRI | GAATTC | 1 cut(s) | 601 |
| EcoT14I | CCWWGG | 3 cut(s) | 441, 465, 702 |
| EcoT22I | ATGCAT | 2 cut(s) | 1332, 1351 |
| EcoT38I | GRGCYC | 1 cut(s) | 432 |
| ErhI | CCWWGG | 3 cut(s) | 441, 465, 702 |
| Esp3I | CGTCTC | 1 cut(s) | 1281 |
| FaqI | GGGAC | 2 cut(s) | 621, 1065 |
| FauI | CCCGC | 1 cut(s) | 530 |
| FbaI | TGATCA | 1 cut(s) | 204 |
| FblI | GTMKAC | 1 cut(s) | 240 |
| Fnu4HI | GCNGC | 8 cut(s) | 213, 216, 420, 966, 990, 1119, 1153, 1317 |
| FokI | GGATG | 6 cut(s) | 27, 506, 599, 889, 943, 1358 |
| FriOI | GRGCYC | 1 cut(s) | 432 |
| Fsp4HI | GCNGC | 8 cut(s) | 213, 216, 420, 966, 990, 1119, 1153, 1317 |
| FspBI | CTAG | 7 cut(s) | 11, 195, 951, 975, 1103, 1247, 1373 |
| FspI | TGCGCA | 1 cut(s) | 727 |
| GlaI | GCGC | 4 cut(s) | 310, 555, 727, 1306 |
| GluI | GCNGC | 8 cut(s) | 213, 216, 420, 966, 990, 1119, 1153, 1317 |
| GsaI | CCCAGC | 2 cut(s) | 484, 488 |
| GsuI | CTGGAG | 2 cut(s) | 304, 1321 |
| HaeII | RGCGCY | 1 cut(s) | 1308 |
| HaeIII | GGCC | 2 cut(s) | 419, 1033 |
| HapII | CCGG | 2 cut(s) | 433, 881 |
| HgaI | GACGC | 1 cut(s) | 226 |
| HhaI | GCGC | 4 cut(s) | 311, 556, 728, 1307 |
| Hin6I | GCGC | 4 cut(s) | 309, 554, 726, 1305 |
| HinP1I | GCGC | 4 cut(s) | 309, 554, 726, 1305 |
| HincII | GTYRAC | 1 cut(s) | 241 |
| HindII | GTYRAC | 1 cut(s) | 241 |
| HpaII | CCGG | 2 cut(s) | 433, 881 |
| HphI | GGTGA | 3 cut(s) | 481, 691, 1193 |
| Hpy166II | GTNNAC | 5 cut(s) | 241, 288, 396, 499, 1168 |
| Hpy188I | TCNGA | 3 cut(s) | 427, 493, 930 |
| Hpy188III | TCNNGA | 6 cut(s) | 232, 272, 638, 980, 1247, 1300 |
| Hpy8I | GTNNAC | 5 cut(s) | 241, 288, 396, 499, 1168 |
| Hpy99I | CGWCG | 3 cut(s) | 242, 266, 371 |
| HpyAV | CCTTC | 7 cut(s) | 86, 238, 577, 727, 867, 880, 1246 |
| HpyCH4III | ACNGT | 2 cut(s) | 64, 635 |
| HpyCH4IV | ACGT | 4 cut(s) | 37, 891, 1170, 1290 |
| HpyCH4V | TGCA | 9 cut(s) | 120, 248, 358, 857, 1066, 1232, 1330, 1349, 1354 |
| HpyF10VI | GCNNNNNNNGC | 4 cut(s) | 734, 1124, 1313, 1322 |
| HpyF3I | CTNAG | 2 cut(s) | 273, 624 |
| HpySE526I | ACGT | 4 cut(s) | 37, 891, 1170, 1290 |
| HspAI | GCGC | 4 cut(s) | 309, 554, 726, 1305 |
| KflI | GGGWCCC | 1 cut(s) | 1079 |
| Ksp22I | TGATCA | 1 cut(s) | 204 |
| Kzo9I | GATC | 2 cut(s) | 204, 1144 |
| LmnI | GCTCC | 4 cut(s) | 427, 435, 1136, 1302 |
| Lsp1109I | GCAGC | 6 cut(s) | 199, 202, 952, 976, 1130, 1303 |
| LweI | GCATC | 4 cut(s) | 351, 844, 867, 1336 |
| MaeI | CTAG | 7 cut(s) | 11, 195, 951, 975, 1103, 1247, 1373 |
| MaeII | ACGT | 4 cut(s) | 37, 891, 1170, 1290 |
| MaeIII | GTNAC | 5 cut(s) | 592, 697, 1096, 1199, 1388 |
| MalI | GATC | 2 cut(s) | 206, 1146 |
| MboI | GATC | 2 cut(s) | 204, 1144 |
| MboII | GAAGA | 5 cut(s) | 583, 803, 863, 1045, 1081 |
| MfeI | CAATTG | 1 cut(s) | 1130 |
| MhlI | GDGCHC | 3 cut(s) | 386, 432, 1129 |
| MluCI | AATT | 6 cut(s) | 267, 508, 601, 1130, 1195, 1270 |
| MmeI | TCCRAC | 1 cut(s) | 630 |
| Mph1103I | ATGCAT | 2 cut(s) | 1332, 1351 |
| MroXI | GAANNNNTTC | 1 cut(s) | 342 |
| MseI | TTAA | 3 cut(s) | 507, 660, 1269 |
| MslI | CAYNNNNRTG | 1 cut(s) | 525 |
| MspA1I | CMGCKG | 2 cut(s) | 212, 484 |
| MspI | CCGG | 2 cut(s) | 433, 881 |
| MspR9I | CCNGG | 1 cut(s) | 434 |
| MunI | CAATTG | 1 cut(s) | 1130 |
| Mva1269I | GAATGC | 1 cut(s) | 342 |
| MvnI | CGCG | 3 cut(s) | 309, 311, 556 |
| MwoI | GCNNNNNNNGC | 4 cut(s) | 734, 1124, 1313, 1322 |
| NciI | CCSGG | 1 cut(s) | 434 |
| NcoI | CCATGG | 2 cut(s) | 465, 702 |
| NdeII | GATC | 2 cut(s) | 204, 1144 |
| NlaIV | GGNNCC | 3 cut(s) | 16, 1080, 1081 |
| NmuCI | GTSAC | 3 cut(s) | 697, 1199, 1388 |
| NsbI | TGCGCA | 1 cut(s) | 727 |
| NsiI | ATGCAT | 2 cut(s) | 1332, 1351 |
| NspI | RCATGY | 2 cut(s) | 1166, 1228 |
| PaeR7I | CTCGAG | 1 cut(s) | 232 |
| PciI | ACATGT | 2 cut(s) | 1162, 1224 |
| PctI | GAATGC | 1 cut(s) | 342 |
| PdmI | GAANNNNTTC | 1 cut(s) | 342 |
| Pfl23II | CGTACG | 1 cut(s) | 312 |
| PkrI | GCNGC | 8 cut(s) | 214, 217, 421, 967, 991, 1120, 1154, 1318 |
| Ppu21I | YACGTR | 1 cut(s) | 1171 |
| PpuMI | RGGWCCY | 1 cut(s) | 1079 |
| PscI | ACATGT | 2 cut(s) | 1162, 1224 |
| PsiI | TTATAA | 1 cut(s) | 579 |
| Psp124BI | GAGCTC | 1 cut(s) | 432 |
| Psp5II | RGGWCCY | 1 cut(s) | 1079 |
| PspFI | CCCAGC | 2 cut(s) | 480, 484 |
| PspLI | CGTACG | 1 cut(s) | 312 |
| PspN4I | GGNNCC | 3 cut(s) | 16, 1080, 1081 |
| PspPI | GGNCC | 1 cut(s) | 1079 |
| PspPPI | RGGWCCY | 1 cut(s) | 1079 |
| PstI | CTGCAG | 1 cut(s) | 360 |
| PstNI | CAGNNNCTG | 1 cut(s) | 215 |
| PvuII | CAGCTG | 2 cut(s) | 212, 484 |
| RsaI | GTAC | 2 cut(s) | 314, 1111 |
| RsaNI | GTAC | 2 cut(s) | 313, 1110 |
| RseI | CAYNNNNRTG | 1 cut(s) | 525 |
| SacI | GAGCTC | 1 cut(s) | 432 |
| SalI | GTCGAC | 1 cut(s) | 239 |
| SaqAI | TTAA | 3 cut(s) | 507, 660, 1269 |
| SatI | GCNGC | 8 cut(s) | 213, 216, 420, 966, 990, 1119, 1153, 1317 |
| Sau3AI | GATC | 2 cut(s) | 204, 1144 |
| Sau96I | GGNCC | 1 cut(s) | 1079 |
| ScaI | AGTACT | 1 cut(s) | 1111 |
| ScrFI | CCNGG | 1 cut(s) | 434 |
| SduI | GDGCHC | 3 cut(s) | 386, 432, 1129 |
| SfaNI | GCATC | 4 cut(s) | 351, 844, 867, 1336 |
| SfcI | CTRYAG | 1 cut(s) | 356 |
| Sfr274I | CTCGAG | 1 cut(s) | 232 |
| SinI | GGWCC | 1 cut(s) | 1079 |
| SlaI | CTCGAG | 1 cut(s) | 232 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 525 |
| SmlI | CTYRAG | 4 cut(s) | 137, 232, 413, 1259 |
| SmoI | CTYRAG | 4 cut(s) | 137, 232, 413, 1259 |
| SnaBI | TACGTA | 1 cut(s) | 1171 |
| Sse9I | AATT | 6 cut(s) | 267, 508, 601, 1130, 1195, 1270 |
| SsiI | CCGC | 8 cut(s) | 95, 192, 420, 537, 674, 737, 1152, 1239 |
| SspMI | CTAG | 7 cut(s) | 11, 195, 951, 975, 1103, 1247, 1373 |
| SstI | GAGCTC | 1 cut(s) | 432 |
| StyD4I | CCNGG | 1 cut(s) | 432 |
| StyI | CCWWGG | 3 cut(s) | 441, 465, 702 |
| TaaI | ACNGT | 2 cut(s) | 64, 635 |
| TaiI | ACGT | 4 cut(s) | 40, 894, 1173, 1293 |
| TaqI | TCGA | 5 cut(s) | 233, 240, 261, 366, 1221 |
| TasI | AATT | 6 cut(s) | 267, 508, 601, 1130, 1195, 1270 |
| TatI | WGTACW | 1 cut(s) | 1109 |
| TauI | GCSGC | 2 cut(s) | 422, 1155 |
| Tru1I | TTAA | 3 cut(s) | 507, 660, 1269 |
| Tru9I | TTAA | 3 cut(s) | 507, 660, 1269 |
| TscAI | CASTG | 1 cut(s) | 111 |
| TseFI | GTSAC | 3 cut(s) | 697, 1199, 1388 |
| TseI | GCWGC | 6 cut(s) | 212, 215, 965, 989, 1118, 1316 |
| Tsp45I | GTSAC | 3 cut(s) | 697, 1199, 1388 |
| TspDTI | ATGAA | 5 cut(s) | 449, 698, 999, 1032, 1202 |
| TspRI | CASTG | 1 cut(s) | 111 |
| VpaK11BI | GGWCC | 1 cut(s) | 1079 |
| XapI | RAATTY | 2 cut(s) | 267, 601 |
| XbaI | TCTAGA | 1 cut(s) | 1246 |
| XceI | RCATGY | 2 cut(s) | 1166, 1228 |
| XhoI | CTCGAG | 1 cut(s) | 232 |
| XmiI | GTMKAC | 1 cut(s) | 240 |
| XmnI | GAANNNNTTC | 1 cut(s) | 342 |
| XspI | CTAG | 7 cut(s) | 11, 195, 951, 975, 1103, 1247, 1373 |
| ZrmI | AGTACT | 1 cut(s) | 1111 |
| Zsp2I | ATGCAT | 2 cut(s) | 1332, 1351 |