Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000001

Orthogroup ID

OG0006627

Physical Location & Seq

Genomic Coordinates Reverse (-)

14687732 .. 14690084

Gene Structure 2353 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_1G00011680.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1743 bp

ATGGCAACTCTAGGCACCCCAGTTACCTCTCTCCCACGTCATCCCACCACTCCCTCCCCAACCGTCAATAACGACCTTCGCTTCCCAACCCAACCGTTTCTCCCACTGATAGACCAATGCACTACCATCAACCAGCTCAAGCAAGTCCATGCCCAAATGCTCAAAACAGCCCTATTCTTTGACCCTTATTCCGCTAGTAAGCTCATCACAGCTGCTGCTCTCTCTTCCTTCTCGAGCCTCGACTATGCACGCCAAGTGTTCGATGAAATTCCTGACCCAAATCTGTTCACTTGGAATGCCCTCATTCGCGCGTACGCCTCCAGCCCCGACCCAGTTGAAAGCATTCTCGTATTTCTGCAGATGCTCGACGAGTGTGATGAGTGCCCCAATAAGTTTACTTTCCCTTTTCTGCTCAAGGCGGCGTCGGAGCTCCGGGCTTCCAAGGTTGGGAGAGGTTTTCATGCCATGGTGATAAAAGCCGAGCTGGGTTCGGATGTTTATATTGTTAATTCGCTCATTCACTTTTATGGGTCGTGCGGGGATTTGGATTTGGCGCGTCTGGTGTTTTTGAAGACTTATAAAAAGGATGTTGTTACTTGGAATTCTGTTATCACGGCTTTCGCTCAGGGGAACTGTCCCGAGGTGGCGTTGGAGTTGTTTAAGGAAATGGAGGCGGAGAATATGAAGCCGAATGATGTCACCATGGTTAGTGTCTTGTCAGCTTGTGCAAAGAAGGCGGATTTGGAGTTTGGGAGGTGGGTTTGTTTGAATGTTGAAAGGCATGGAGTTGAAGAGAACTTGACTTTGAATAATGCTATGCTAGATATGTATGTGAAATGCGGGAGTGTTGAAGATGCGGAGAGATTGTTTGGTAGGATGCCGGAGAAGGACGTTGTGTCATGGACTACTATGCTTGATGGGTATGCTCGGATGGGGAATTATGATGAGGCTAGGCGTGTTTTTGCTGCCATGCCTAGTCAGGATATTGCTGCGTGGAATGTGCTCATTTCGTCTTATGAACAGAATGGTAGGCCAAAAGAGGCTTTAGCTGTCTTCCATGAGTTGCAAAAGAACAAGGGTCCCAAGCCTGATGAGGTTACTCTAGTTAGTACTCTGGCAGCGTGTGCTCAATTGGGAGCGATTGATCTTGGCGGCTGGATACATGTTTATGTACAGAAGCAGGGAATGAAGTTGAATTGTCACCTCACAACCTCGCTTGTTGACATGTATGCAAAATGTGGAAACCTAGAGAAGGCACTTGAGGTTTTTAATTCAGTGGAGATAAGAGACGTATTTGTCTGGAGCGCCATGATTGCTGCTTTGGCAATGCATGGTCAGGGGAGGGATGCATTGCACTTTTTCTCAAAAATGCTAGAAGCTAAGGTGAAGCCAAATGCTGTGACATTTACTAACATATTATGCGCATGTAGCCACGCAGGATTGGTGGATGAGGGAAGAATATTTTTCTATCAAATGGAGCGAGTTTATGGAGTTGTGACTGGAATAAAGCACTATGCGTGCATGGTTGACATTCTTGGTCGTTCAGGTAATCTGGAGGAAGCTGCAGAACTAATAGAGAAAATGCCAATATCTCCCACTCCTTCTGTATGGGGGGCTCTGCTTGGTGCATGTACGCGCCATGGGAATGTTGCACTTGCTGAAAAGGCTTGTAGCCATTTGCTCGACTTGGATCCCAGAAATCATGGAGCCTATTCGAACTTGTTGAGAATGGAAGATAACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006139 GO:0006396 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009507 GO:0009536 GO:0009987 GO:0010467 GO:0016070 GO:0016787 GO:0016788 GO:0031425 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DYW_deaminase PPR

Protein Analysis

580

Amino Acids

64.3

Weight (kDa)

5.65

Isoelectric Point (pI)

43.93

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPR_2	PF13041	195 - 244	6.1e-12	PPR repeat family
PPR	PF01535	198 - 227	1.2e-06	PPR repeat
PPR_2	PF13041	296 - 327	5.2e-06	PPR repeat family
PPR	PF01535	299 - 327	1e-06	PPR repeat
PPR_2	PF13041	328 - 376	3.3e-08	PPR repeat family
PPR	PF01535	331 - 358	3.4e-06	PPR repeat
PPR_2	PF13041	429 - 477	3e-10	PPR repeat family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006627)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G29760
fragaria_vesca	FvH4_3g38420
malus_domestica	MD03G1072100.v1.1 MD11G1076100.v1.1 MD11G1076300.v1.1 MD11G1076700.v1.1
prunus_persica	Prupe.6G058800_v2.0.a1
pyrus_communis	pycom03g05830 pycom12g05280
rosa_chinensis	RchiOBHm_Chr5g0069041 RchiOBHm_Chr5g0069081
rosa_laevigata	RLG00000017743 RLG00000036033
rosa_multiflora	Rmu_co8508453.1_g000001 Rmu_sc0000853.1_g000010 Rmu_sc0000853.1_g000011 Rmu_sc0000936.1_g000009
rosa_roxburghii	Rroxscaffold_1G00011680
rosa_rugosa	Rorug05G0395900
rosa_samantha	Rh5AG452500 Rh5AG482500 Rh5BG471800 Rh5BG503600 Rh5CG494200
rosa_wichuraiana	Rw0G006080 Rw5G042280

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	579
AasI	GACNNNNNNGTC	1 cut(s)	1295
Acc16I	TGCGCA	1 cut(s)	1423
AccB1I	GGYRCC	1 cut(s)	14
AccII	CGCG	4 cut(s)	309, 311, 556, 1636
AciI	CCGC	8 cut(s)	192, 419, 537, 674, 737, 840, 857, 1152
AclWI	GGATC	2 cut(s)	1685, 1698
AcsI	RAATTY	2 cut(s)	267, 601
AcyI	GRCGYC	1 cut(s)	422
AfaI	GTAC	4 cut(s)	314, 1111, 1173, 1633
AfiI	CCNNNNNNNGG	2 cut(s)	447, 1252
AflIII	ACRYGT	2 cut(s)	1162, 1224
AgsI	TTSAA	8 cut(s)	338, 571, 769, 776, 791, 808, 851, 1195
AhdI	GACNNNNNGTC	1 cut(s)	895
AjiI	CACGTC	1 cut(s)	38
AjuI	GAANNNNNNNTTGG	2 cut(s)	725, 757
AluBI	AGCT	9 cut(s)	136, 202, 212, 430, 484, 722, 1049, 1379, 1562
AluI	AGCT	9 cut(s)	136, 202, 212, 430, 484, 722, 1049, 1379, 1562
Alw21I	GWGCWC	3 cut(s)	432, 1005, 1129
Alw26I	GTCTC	1 cut(s)	1281
AlwI	GGATC	2 cut(s)	1685, 1698
AlwNI	CAGNNNCTG	1 cut(s)	215
Ama87I	CYCGRG	2 cut(s)	232, 638
AoxI	GGCC	1 cut(s)	1031
ApeKI	GCWGC	7 cut(s)	212, 215, 965, 989, 1118, 1316, 1562
ApoI	RAATTY	2 cut(s)	267, 601
Asp700I	GAANNNNTTC	1 cut(s)	342
AspLEI	GCGC	5 cut(s)	311, 556, 1307, 1424, 1638
AspS9I	GGNCC	1 cut(s)	1079
AsuC2I	CCSGG	1 cut(s)	434
AsuHPI	GGTGA	4 cut(s)	481, 691, 1193, 1396
AsuII	TTCGAA	1 cut(s)	1715
AvaI	CYCGRG	2 cut(s)	232, 638
AvaII	GGWCC	1 cut(s)	1079
BaeGI	GKGCMC	1 cut(s)	386
BamHI	GGATCC	1 cut(s)	1690
BanI	GGYRCC	1 cut(s)	14
BanII	GRGCYC	2 cut(s)	432, 1618
BbsI	GAAGAC	2 cut(s)	578, 1045
Bbv12I	GWGCWC	3 cut(s)	432, 1005, 1129
BbvI	GCAGC	7 cut(s)	199, 202, 952, 976, 1130, 1303, 1549
BccI	CCATC	3 cut(s)	134, 911, 925
BceAI	ACGGC	1 cut(s)	630
BciVI	GTATCC	1 cut(s)	1152
BcnI	CCSGG	1 cut(s)	434
BcoDI	GTCTC	1 cut(s)	1281
BfaI	CTAG	9 cut(s)	11, 195, 821, 951, 975, 1103, 1247, 1373, 1741
BfmI	CTRYAG	2 cut(s)	356, 1563
BfoI	RGCGCY	1 cut(s)	1308
BfuI	GTATCC	1 cut(s)	1152
BisI	GCNGC	9 cut(s)	213, 216, 420, 966, 990, 1119, 1153, 1317, 1563
BlsI	GCNGC	9 cut(s)	214, 217, 421, 967, 991, 1120, 1154, 1318, 1564
BmcAI	AGTACT	1 cut(s)	1111
Bme1390I	CCNGG	1 cut(s)	434
Bme18I	GGWCC	1 cut(s)	1079
BmeRI	GACNNNNNGTC	1 cut(s)	895
BmeT110I	CYCGRG	2 cut(s)	232, 638
BmgBI	CACGTC	1 cut(s)	38
BmgT120I	GGNCC	1 cut(s)	1079
BmiI	GGNNCC	5 cut(s)	16, 1080, 1081, 1692, 1708
BmrFI	CCNGG	1 cut(s)	434
BmrI	ACTGGG	2 cut(s)	14, 326
BmsI	GCATC	4 cut(s)	351, 844, 867, 1336
BmuI	ACTGGG	2 cut(s)	14, 326
BpiI	GAAGAC	2 cut(s)	578, 1045
BpmI	CTGGAG	3 cut(s)	304, 1321, 1574
Bpu10I	CCTNAGC	2 cut(s)	624, 1380
Bpu14I	TTCGAA	1 cut(s)	1715
BpuEI	CTTGAG	3 cut(s)	122, 398, 1280
BpuMI	CCSGG	1 cut(s)	434
BsaHI	GRCGYC	1 cut(s)	422
BsaJI	CCNNGG	5 cut(s)	441, 465, 639, 702, 1639
BsaXI	ACNNNNNCTCC	4 cut(s)	84, 114, 851, 881
Bsc4I	CCNNNNNNNGG	2 cut(s)	447, 1252
Bse1I	ACTGG	3 cut(s)	20, 332, 1504
Bse3DI	GCAATG	2 cut(s)	1332, 1349
BseDI	CCNNGG	5 cut(s)	441, 465, 639, 702, 1639
BseGI	GGATG	7 cut(s)	40, 499, 592, 882, 936, 1351, 1453
BseLI	CCNNNNNNNGG	2 cut(s)	447, 1252
BseMI	GCAATG	2 cut(s)	1332, 1349
BseMII	CTCAG	1 cut(s)	638
BseNI	ACTGG	3 cut(s)	20, 332, 1504
BseSI	GKGCMC	1 cut(s)	386
BseXI	GCAGC	7 cut(s)	199, 202, 952, 976, 1130, 1303, 1549
BseYI	CCCAGC	1 cut(s)	484
Bsh1236I	CGCG	4 cut(s)	309, 311, 556, 1636
BshFI	GGCC	1 cut(s)	1033
BshNI	GGYRCC	1 cut(s)	14
BsiHKAI	GWGCWC	3 cut(s)	432, 1005, 1129
BsiHKCI	CYCGRG	2 cut(s)	232, 638
BsiSI	CCGG	2 cut(s)	433, 881
BsiWI	CGTACG	1 cut(s)	312
BslFI	GGGAC	2 cut(s)	621, 1065
BslI	CCNNNNNNNGG	2 cut(s)	447, 1252
BsmAI	GTCTC	1 cut(s)	1281
BsmBI	CGTCTC	1 cut(s)	1281
BsmFI	GGGAC	2 cut(s)	621, 1065
BsmI	GAATGC	2 cut(s)	301, 342
BsnI	GGCC	1 cut(s)	1033
BsoBI	CYCGRG	2 cut(s)	232, 638
Bsp119I	TTCGAA	1 cut(s)	1715
Bsp1286I	GDGCHC	5 cut(s)	386, 432, 1005, 1129, 1618
Bsp1407I	TGTACA	1 cut(s)	1171
Bsp143I	GATC	2 cut(s)	1144, 1690
Bsp19I	CCATGG	3 cut(s)	465, 702, 1639
BspACI	CCGC	8 cut(s)	192, 419, 537, 674, 737, 840, 857, 1152
BspANI	GGCC	1 cut(s)	1033
BspCNI	CTCAG	1 cut(s)	637
BspFNI	CGCG	4 cut(s)	309, 311, 556, 1636
BspLI	GGNNCC	5 cut(s)	16, 1080, 1081, 1692, 1708
BspMAI	CTGCAG	2 cut(s)	360, 1567
BspPI	GGATC	2 cut(s)	1685, 1698
BspT104I	TTCGAA	1 cut(s)	1715
BspT107I	GGYRCC	1 cut(s)	14
BsrDI	GCAATG	2 cut(s)	1332, 1349
BsrGI	TGTACA	1 cut(s)	1171
BsrI	ACTGG	3 cut(s)	20, 332, 1504
BssECI	CCNNGG	5 cut(s)	441, 465, 639, 702, 1639
BssMI	GATC	2 cut(s)	1144, 1690
BssNI	GRCGYC	1 cut(s)	422
BssT1I	CCWWGG	4 cut(s)	441, 465, 702, 1639
Bst4CI	ACNGT	3 cut(s)	64, 96, 635
Bst6I	CTCTTC	2 cut(s)	229, 786
BstACI	GRCGYC	1 cut(s)	422
BstAPI	GCANNNNNTGC	1 cut(s)	1124
BstAUI	TGTACA	1 cut(s)	1171
BstBI	TTCGAA	1 cut(s)	1715
BstC8I	GCNNGC	2 cut(s)	250, 1519
BstDEI	CTNAG	2 cut(s)	624, 1380
BstDSI	CCRYGG	3 cut(s)	465, 702, 1639
BstENI	CCTNNNNNAGG	1 cut(s)	1250
BstF5I	GGATG	7 cut(s)	40, 499, 592, 882, 936, 1351, 1453
BstFNI	CGCG	4 cut(s)	309, 311, 556, 1636
BstH2I	RGCGCY	1 cut(s)	1308
BstHHI	GCGC	5 cut(s)	311, 556, 1307, 1424, 1638
BstKTI	GATC	2 cut(s)	1147, 1693
BstMAI	GTCTC	1 cut(s)	1281
BstMBI	GATC	2 cut(s)	1144, 1690
BstMWI	GCNNNNNNNGC	6 cut(s)	734, 1124, 1313, 1322, 1428, 1664
BstNSI	RCATGY	4 cut(s)	1166, 1228, 1428, 1632
BstSCI	CCNGG	1 cut(s)	432
BstSFI	CTRYAG	2 cut(s)	356, 1563
BstSLI	GKGCMC	1 cut(s)	386
BstUI	CGCG	4 cut(s)	309, 311, 556, 1636
BstV1I	GCAGC	7 cut(s)	199, 202, 952, 976, 1130, 1303, 1549
BstV2I	GAAGAC	2 cut(s)	578, 1045
BstX2I	RGATCY	1 cut(s)	1690
BstYI	RGATCY	1 cut(s)	1690
BsuI	GTATCC	1 cut(s)	1152
BsuRI	GGCC	1 cut(s)	1033
BtgI	CCRYGG	3 cut(s)	465, 702, 1639
BtrI	CACGTC	1 cut(s)	38
BtsCI	GGATG	7 cut(s)	40, 499, 592, 882, 936, 1351, 1453
BtsIMutI	CAGTG	2 cut(s)	104, 1281
Cac8I	GCNNGC	2 cut(s)	250, 1519
CaiI	CAGNNNCTG	1 cut(s)	215
CfoI	GCGC	5 cut(s)	311, 556, 1307, 1424, 1638
Cfr13I	GGNCC	1 cut(s)	1079
CseI	GACGC	2 cut(s)	411, 545
Csp6I	GTAC	4 cut(s)	313, 1110, 1172, 1632
CviQI	GTAC	4 cut(s)	313, 1110, 1172, 1632
DdeI	CTNAG	2 cut(s)	624, 1380
DpnI	GATC	2 cut(s)	1146, 1692
DpnII	GATC	2 cut(s)	1144, 1690
DrdI	GACNNNNNNGTC	1 cut(s)	1295
DriI	GACNNNNNGTC	1 cut(s)	895
DseDI	GACNNNNNNGTC	1 cut(s)	1295
Eam1104I	CTCTTC	2 cut(s)	229, 786
Eam1105I	GACNNNNNGTC	1 cut(s)	895
EarI	CTCTTC	2 cut(s)	229, 786
EciI	GGCGGA	2 cut(s)	689, 752
Ecl136II	GAGCTC	1 cut(s)	430
Eco130I	CCWWGG	4 cut(s)	441, 465, 702, 1639
Eco24I	GRGCYC	2 cut(s)	432, 1618
Eco47I	GGWCC	1 cut(s)	1079
Eco53kI	GAGCTC	1 cut(s)	430
Eco88I	CYCGRG	2 cut(s)	232, 638
EcoICRI	GAGCTC	1 cut(s)	430
EcoNI	CCTNNNNNAGG	1 cut(s)	1250
EcoO109I	RGGNCCY	1 cut(s)	1079
EcoRI	GAATTC	1 cut(s)	601
EcoT14I	CCWWGG	4 cut(s)	441, 465, 702, 1639
EcoT22I	ATGCAT	2 cut(s)	1332, 1351
EcoT38I	GRGCYC	2 cut(s)	432, 1618
ErhI	CCWWGG	4 cut(s)	441, 465, 702, 1639
Esp3I	CGTCTC	1 cut(s)	1281
FaqI	GGGAC	2 cut(s)	621, 1065
FauI	CCCGC	2 cut(s)	530, 833
Fnu4HI	GCNGC	9 cut(s)	213, 216, 420, 966, 990, 1119, 1153, 1317, 1563
FokI	GGATG	7 cut(s)	27, 506, 599, 889, 943, 1358, 1460
FriOI	GRGCYC	2 cut(s)	432, 1618
Fsp4HI	GCNGC	9 cut(s)	213, 216, 420, 966, 990, 1119, 1153, 1317, 1563
FspAI	RTGCGCAY	1 cut(s)	1423
FspBI	CTAG	9 cut(s)	11, 195, 821, 951, 975, 1103, 1247, 1373, 1741
FspI	TGCGCA	1 cut(s)	1423
GlaI	GCGC	5 cut(s)	310, 555, 1306, 1423, 1637
GluI	GCNGC	9 cut(s)	213, 216, 420, 966, 990, 1119, 1153, 1317, 1563
GsaI	CCCAGC	1 cut(s)	488
GsuI	CTGGAG	3 cut(s)	304, 1321, 1574
HaeII	RGCGCY	1 cut(s)	1308
HaeIII	GGCC	1 cut(s)	1033
HapII	CCGG	2 cut(s)	433, 881
HgaI	GACGC	2 cut(s)	411, 545
HhaI	GCGC	5 cut(s)	311, 556, 1307, 1424, 1638
Hin1I	GRCGYC	1 cut(s)	422
Hin6I	GCGC	5 cut(s)	309, 554, 1305, 1422, 1636
HinP1I	GCGC	5 cut(s)	309, 554, 1305, 1422, 1636
HincII	GTYRAC	2 cut(s)	1222, 1528
HindII	GTYRAC	2 cut(s)	1222, 1528
HpaII	CCGG	2 cut(s)	433, 881
HphI	GGTGA	4 cut(s)	481, 691, 1193, 1396
Hpy166II	GTNNAC	4 cut(s)	288, 396, 1222, 1528
Hpy188I	TCNGA	3 cut(s)	427, 493, 930
Hpy188III	TCNNGA	6 cut(s)	232, 272, 638, 980, 1300, 1553
Hpy8I	GTNNAC	4 cut(s)	288, 396, 1222, 1528
Hpy99I	CGWCG	2 cut(s)	371, 427
HpyAV	CCTTC	6 cut(s)	86, 238, 727, 880, 1246, 1611
HpyCH4III	ACNGT	3 cut(s)	64, 96, 635
HpyCH4IV	ACGT	3 cut(s)	37, 891, 1290
HpyF10VI	GCNNNNNNNGC	6 cut(s)	734, 1124, 1313, 1322, 1428, 1664
HpyF3I	CTNAG	2 cut(s)	624, 1380
HpySE526I	ACGT	3 cut(s)	37, 891, 1290
Hsp92I	GRCGYC	1 cut(s)	422
HspAI	GCGC	5 cut(s)	309, 554, 1305, 1422, 1636
KflI	GGGWCCC	1 cut(s)	1079
Kzo9I	GATC	2 cut(s)	1144, 1690
LmnI	GCTCC	6 cut(s)	427, 435, 1136, 1302, 1477, 1706
Lsp1109I	GCAGC	7 cut(s)	199, 202, 952, 976, 1130, 1303, 1549
LweI	GCATC	4 cut(s)	351, 844, 867, 1336
MaeI	CTAG	9 cut(s)	11, 195, 821, 951, 975, 1103, 1247, 1373, 1741
MaeII	ACGT	3 cut(s)	37, 891, 1290
MaeIII	GTNAC	7 cut(s)	22, 592, 697, 1096, 1199, 1399, 1495
MalI	GATC	2 cut(s)	1146, 1692
MboI	GATC	2 cut(s)	1144, 1690
MboII	GAAGA	6 cut(s)	216, 583, 803, 863, 1045, 1467
MfeI	CAATTG	1 cut(s)	1130
MflI	RGATCY	1 cut(s)	1690
MhlI	GDGCHC	5 cut(s)	386, 432, 1005, 1129, 1618
MluCI	AATT	7 cut(s)	267, 508, 601, 937, 1130, 1195, 1270
MmeI	TCCRAC	2 cut(s)	405, 630
Mph1103I	ATGCAT	2 cut(s)	1332, 1351
MroXI	GAANNNNTTC	1 cut(s)	342
MseI	TTAA	3 cut(s)	507, 660, 1269
MslI	CAYNNNNRTG	3 cut(s)	525, 1167, 1644
MspA1I	CMGCKG	1 cut(s)	212
MspI	CCGG	2 cut(s)	433, 881
MspR9I	CCNGG	1 cut(s)	434
MunI	CAATTG	1 cut(s)	1130
Mva1269I	GAATGC	2 cut(s)	301, 342
MvnI	CGCG	4 cut(s)	309, 311, 556, 1636
MwoI	GCNNNNNNNGC	6 cut(s)	734, 1124, 1313, 1322, 1428, 1664
NciI	CCSGG	1 cut(s)	434
NcoI	CCATGG	3 cut(s)	465, 702, 1639
NdeII	GATC	2 cut(s)	1144, 1690
NlaIV	GGNNCC	5 cut(s)	16, 1080, 1081, 1692, 1708
NmeAIII	GCCGAG	1 cut(s)	505
NmuCI	GTSAC	4 cut(s)	697, 1199, 1399, 1495
NsbI	TGCGCA	1 cut(s)	1423
NsiI	ATGCAT	2 cut(s)	1332, 1351
NspI	RCATGY	4 cut(s)	1166, 1228, 1428, 1632
NspV	TTCGAA	1 cut(s)	1715
PaeR7I	CTCGAG	1 cut(s)	232
PciI	ACATGT	2 cut(s)	1162, 1224
PctI	GAATGC	2 cut(s)	301, 342
PdmI	GAANNNNTTC	1 cut(s)	342
Pfl23II	CGTACG	1 cut(s)	312
PkrI	GCNGC	9 cut(s)	214, 217, 421, 967, 991, 1120, 1154, 1318, 1564
PpuMI	RGGWCCY	1 cut(s)	1079
PscI	ACATGT	2 cut(s)	1162, 1224
PsiI	TTATAA	1 cut(s)	579
Psp124BI	GAGCTC	1 cut(s)	432
Psp5II	RGGWCCY	1 cut(s)	1079
PspFI	CCCAGC	1 cut(s)	484
PspLI	CGTACG	1 cut(s)	312
PspN4I	GGNNCC	5 cut(s)	16, 1080, 1081, 1692, 1708
PspPI	GGNCC	1 cut(s)	1079
PspPPI	RGGWCCY	1 cut(s)	1079
PstI	CTGCAG	2 cut(s)	360, 1567
PstNI	CAGNNNCTG	1 cut(s)	215
PsuI	RGATCY	1 cut(s)	1690
PvuII	CAGCTG	1 cut(s)	212
RsaI	GTAC	4 cut(s)	314, 1111, 1173, 1633
RsaNI	GTAC	4 cut(s)	313, 1110, 1172, 1632
RseI	CAYNNNNRTG	3 cut(s)	525, 1167, 1644
SacI	GAGCTC	1 cut(s)	432
SaqAI	TTAA	3 cut(s)	507, 660, 1269
SatI	GCNGC	9 cut(s)	213, 216, 420, 966, 990, 1119, 1153, 1317, 1563
Sau3AI	GATC	2 cut(s)	1144, 1690
Sau96I	GGNCC	1 cut(s)	1079
ScaI	AGTACT	1 cut(s)	1111
ScrFI	CCNGG	1 cut(s)	434
SduI	GDGCHC	5 cut(s)	386, 432, 1005, 1129, 1618
SfaNI	GCATC	4 cut(s)	351, 844, 867, 1336
SfcI	CTRYAG	2 cut(s)	356, 1563
Sfr274I	CTCGAG	1 cut(s)	232
SfuI	TTCGAA	1 cut(s)	1715
SinI	GGWCC	1 cut(s)	1079
SlaI	CTCGAG	1 cut(s)	232
SmiMI	CAYNNNNRTG	3 cut(s)	525, 1167, 1644
SmlI	CTYRAG	4 cut(s)	137, 232, 413, 1259
SmoI	CTYRAG	4 cut(s)	137, 232, 413, 1259
Sse9I	AATT	7 cut(s)	267, 508, 601, 937, 1130, 1195, 1270
SsiI	CCGC	8 cut(s)	192, 419, 537, 674, 737, 840, 857, 1152
SspI	AATATT	1 cut(s)	1461
SspMI	CTAG	9 cut(s)	11, 195, 821, 951, 975, 1103, 1247, 1373, 1741
SstI	GAGCTC	1 cut(s)	432
StyD4I	CCNGG	1 cut(s)	432
StyI	CCWWGG	4 cut(s)	441, 465, 702, 1639
TaaI	ACNGT	3 cut(s)	64, 96, 635
TaiI	ACGT	3 cut(s)	40, 894, 1293
TaqI	TCGA	6 cut(s)	233, 240, 261, 366, 1683, 1715
TasI	AATT	7 cut(s)	267, 508, 601, 937, 1130, 1195, 1270
TatI	WGTACW	2 cut(s)	1109, 1171
TauI	GCSGC	2 cut(s)	422, 1155
Tru1I	TTAA	3 cut(s)	507, 660, 1269
Tru9I	TTAA	3 cut(s)	507, 660, 1269
TscAI	CASTG	2 cut(s)	111, 1281
TseFI	GTSAC	4 cut(s)	697, 1199, 1399, 1495
TseI	GCWGC	7 cut(s)	212, 215, 965, 989, 1118, 1316, 1562
Tsp45I	GTSAC	4 cut(s)	697, 1199, 1399, 1495
TspDTI	ATGAA	5 cut(s)	279, 449, 698, 1032, 1202
TspRI	CASTG	2 cut(s)	111, 1281
VpaK11BI	GGWCC	1 cut(s)	1079
XagI	CCTNNNNNAGG	1 cut(s)	1250
XapI	RAATTY	2 cut(s)	267, 601
XceI	RCATGY	4 cut(s)	1166, 1228, 1428, 1632
XhoI	CTCGAG	1 cut(s)	232
XmnI	GAANNNNTTC	1 cut(s)	342
XspI	CTAG	9 cut(s)	11, 195, 821, 951, 975, 1103, 1247, 1373, 1741
ZrmI	AGTACT	1 cut(s)	1111
Zsp2I	ATGCAT	2 cut(s)	1332, 1351

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.