Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000853.1

Orthogroup ID

OG0006627

Physical Location & Seq

Genomic Coordinates Forward (+)

29022 .. 29645

Gene Structure 624 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000853.1_g000010.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 624 bp

atgcttgacgagtgccccaacaagttcactttcccttttctacaaaaggcggtgtcgaagctccgggcttccaaggttgggagaggttttcatgccatggtgataaaagccaagctgggttcggatgtttatattattaattcgctcattcacttttatgggtctctttgggatttgaatttggcgcgtttggtgtttttgaagacttataagaaggatgttgttacttggaattctattatcacggcttttgctcagggaaatttccttgaggtggcgttggagttgtttaaggaaatagaggcagagaatatgaagccaaataatgtgaacatggttagtgtcttgtcagcttgcgcaaagaaggtagatttggagtttggtaggtgggtttgtttgagtgttgaaaggcatggagttgaagagaacttgactttgaataatgctattctggatatgtatgtgaaatgcgggagtgttgaagatgtggagagattgtttggtaggatgccggagaaagacgttgtgtcatggaatactatgcttgatgagtatgctcagatggggaaatatgctgaggctaggtgttttgctaccatgcgtagtcaggatattgctgcgtag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006139 GO:0006396 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009507 GO:0009536 GO:0009987 GO:0010467 GO:0016070 GO:0016787 GO:0016788 GO:0031425 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DYW_deaminase PPR

Protein Analysis

207

Amino Acids

23.52

Weight (kDa)

6.83

Isoelectric Point (pI)

36.36

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006627)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G29760
fragaria_vesca	FvH4_3g38420
malus_domestica	MD03G1072100.v1.1 MD11G1076100.v1.1 MD11G1076300.v1.1 MD11G1076700.v1.1
prunus_persica	Prupe.6G058800_v2.0.a1
pyrus_communis	pycom03g05830 pycom12g05280
rosa_chinensis	RchiOBHm_Chr5g0069041 RchiOBHm_Chr5g0069081
rosa_laevigata	RLG00000017743 RLG00000036033
rosa_multiflora	Rmu_co8508453.1_g000001 Rmu_sc0000853.1_g000010 Rmu_sc0000853.1_g000011 Rmu_sc0000936.1_g000009
rosa_roxburghii	Rroxscaffold_1G00011680
rosa_rugosa	Rorug05G0395900
rosa_samantha	Rh5AG452500 Rh5AG482500 Rh5BG471800 Rh5BG503600 Rh5CG494200
rosa_wichuraiana	Rw0G006080 Rw5G042280

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	210
Acc16I	TGCGCA	1 cut(s)	358
AccII	CGCG	1 cut(s)	187
AciI	CCGC	2 cut(s)	50, 471
AcsI	RAATTY	3 cut(s)	178, 232, 262
AfiI	CCNNNNNNNGG	2 cut(s)	78, 274
AgsI	TTSAA	6 cut(s)	178, 202, 407, 422, 439, 482
AhdI	GACNNNNNGTC	1 cut(s)	526
AjuI	GAANNNNNNNTTGG	2 cut(s)	356, 388
AluBI	AGCT	3 cut(s)	61, 115, 353
AluI	AGCT	3 cut(s)	61, 115, 353
Alw26I	GTCTC	1 cut(s)	168
ApeKI	GCWGC	1 cut(s)	617
ApoI	RAATTY	3 cut(s)	178, 232, 262
AseI	ATTAAT	1 cut(s)	138
AspLEI	GCGC	2 cut(s)	187, 359
AsuC2I	CCSGG	1 cut(s)	65
AsuHPI	GGTGA	1 cut(s)	112
BaeGI	GKGCMC	1 cut(s)	17
BbsI	GAAGAC	1 cut(s)	209
BbvCI	CCTCAGC	1 cut(s)	576
BbvI	GCAGC	1 cut(s)	604
BccI	CCATC	1 cut(s)	556
BceAI	ACGGC	1 cut(s)	261
BcnI	CCSGG	1 cut(s)	65
BcoDI	GTCTC	1 cut(s)	168
BfaI	CTAG	1 cut(s)	582
BisI	GCNGC	1 cut(s)	618
BlsI	GCNGC	1 cut(s)	619
Bme1390I	CCNGG	1 cut(s)	65
BmeRI	GACNNNNNGTC	1 cut(s)	526
BmrFI	CCNGG	1 cut(s)	65
BmsI	GCATC	1 cut(s)	498
BpiI	GAAGAC	1 cut(s)	209
Bpu10I	CCTNAGC	2 cut(s)	255, 576
BpuEI	CTTGAG	1 cut(s)	290
BpuMI	CCSGG	1 cut(s)	65
BsaI	GGTCTC	1 cut(s)	168
BsaJI	CCNNGG	2 cut(s)	72, 96
BsaXI	ACNNNNNCTCC	2 cut(s)	482, 512
Bsc4I	CCNNNNNNNGG	2 cut(s)	78, 274
BseDI	CCNNGG	2 cut(s)	72, 96
BseGI	GGATG	3 cut(s)	130, 223, 513
BseLI	CCNNNNNNNGG	2 cut(s)	78, 274
BseMII	CTCAG	3 cut(s)	269, 567, 572
BseSI	GKGCMC	1 cut(s)	17
BseXI	GCAGC	1 cut(s)	604
BseYI	CCCAGC	1 cut(s)	115
Bsh1236I	CGCG	1 cut(s)	187
BsiSI	CCGG	2 cut(s)	64, 512
BslI	CCNNNNNNNGG	2 cut(s)	78, 274
BsmAI	GTCTC	1 cut(s)	168
Bso31I	GGTCTC	1 cut(s)	168
Bsp1286I	GDGCHC	1 cut(s)	17
Bsp19I	CCATGG	1 cut(s)	96
BspACI	CCGC	2 cut(s)	50, 471
BspCNI	CTCAG	3 cut(s)	268, 568, 571
BspFNI	CGCG	1 cut(s)	187
BspTNI	GGTCTC	1 cut(s)	168
BssECI	CCNNGG	2 cut(s)	72, 96
BssT1I	CCWWGG	2 cut(s)	72, 96
Bst6I	CTCTTC	1 cut(s)	417
BstC8I	GCNNGC	1 cut(s)	355
BstDEI	CTNAG	3 cut(s)	255, 558, 576
BstDSI	CCRYGG	1 cut(s)	96
BstF5I	GGATG	3 cut(s)	130, 223, 513
BstFNI	CGCG	1 cut(s)	187
BstHHI	GCGC	2 cut(s)	187, 359
BstMAI	GTCTC	1 cut(s)	168
BstSCI	CCNGG	1 cut(s)	63
BstSLI	GKGCMC	1 cut(s)	17
BstUI	CGCG	1 cut(s)	187
BstV1I	GCAGC	1 cut(s)	604
BstV2I	GAAGAC	1 cut(s)	209
BtgI	CCRYGG	1 cut(s)	96
BtsCI	GGATG	3 cut(s)	130, 223, 513
Cac8I	GCNNGC	1 cut(s)	355
CfoI	GCGC	2 cut(s)	187, 359
CviAII	CATG	6 cut(s)	92, 97, 334, 413, 531, 598
CviJI	RGCY	8 cut(s)	61, 68, 110, 115, 248, 319, 353, 581
CviKI_1	RGCY	8 cut(s)	61, 68, 110, 115, 248, 319, 353, 581
DdeI	CTNAG	3 cut(s)	255, 558, 576
DriI	GACNNNNNGTC	1 cut(s)	526
Eam1104I	CTCTTC	1 cut(s)	417
Eam1105I	GACNNNNNGTC	1 cut(s)	526
EarI	CTCTTC	1 cut(s)	417
Eco130I	CCWWGG	2 cut(s)	72, 96
Eco31I	GGTCTC	1 cut(s)	168
EcoRI	GAATTC	1 cut(s)	232
EcoT14I	CCWWGG	2 cut(s)	72, 96
ErhI	CCWWGG	2 cut(s)	72, 96
FaeI	CATG	6 cut(s)	95, 100, 337, 416, 534, 601
FatI	CATG	6 cut(s)	91, 96, 333, 412, 530, 597
FauI	CCCGC	1 cut(s)	464
Fnu4HI	GCNGC	1 cut(s)	618
FokI	GGATG	3 cut(s)	137, 230, 520
Fsp4HI	GCNGC	1 cut(s)	618
FspBI	CTAG	1 cut(s)	582
FspI	TGCGCA	1 cut(s)	358
GlaI	GCGC	2 cut(s)	186, 358
GluI	GCNGC	1 cut(s)	618
GsaI	CCCAGC	1 cut(s)	119
HapII	CCGG	2 cut(s)	64, 512
HhaI	GCGC	2 cut(s)	187, 359
Hin1II	CATG	6 cut(s)	95, 100, 337, 416, 534, 601
Hin6I	GCGC	2 cut(s)	185, 357
HinP1I	GCGC	2 cut(s)	185, 357
HpaII	CCGG	2 cut(s)	64, 512
HphI	GGTGA	1 cut(s)	112
Hpy166II	GTNNAC	2 cut(s)	27, 331
Hpy188I	TCNGA	2 cut(s)	124, 561
Hpy188III	TCNNGA	2 cut(s)	452, 608
Hpy8I	GTNNAC	2 cut(s)	27, 331
HpyAV	CCTTC	2 cut(s)	208, 358
HpyCH4IV	ACGT	1 cut(s)	522
HpyF3I	CTNAG	3 cut(s)	255, 558, 576
HpySE526I	ACGT	1 cut(s)	522
Hsp92II	CATG	6 cut(s)	95, 100, 337, 416, 534, 601
HspAI	GCGC	2 cut(s)	185, 357
LmnI	GCTCC	1 cut(s)	66
LpnPI	CCDG	6 cut(s)	77, 101, 242, 437, 525, 593
Lsp1109I	GCAGC	1 cut(s)	604
LweI	GCATC	1 cut(s)	498
MaeI	CTAG	1 cut(s)	582
MaeII	ACGT	1 cut(s)	522
MaeIII	GTNAC	1 cut(s)	223
MboII	GAAGA	3 cut(s)	214, 434, 494
MhlI	GDGCHC	1 cut(s)	17
MluCI	AATT	4 cut(s)	139, 178, 232, 262
MmeI	TCCRAC	1 cut(s)	261
MnlI	CCTC	4 cut(s)	77, 265, 295, 571
MseI	TTAA	2 cut(s)	138, 291
MslI	CAYNNNNRTG	1 cut(s)	156
MspI	CCGG	2 cut(s)	64, 512
MspR9I	CCNGG	1 cut(s)	65
MvnI	CGCG	1 cut(s)	187
NciI	CCSGG	1 cut(s)	65
NcoI	CCATGG	1 cut(s)	96
NlaIII	CATG	6 cut(s)	95, 100, 337, 416, 534, 601
NsbI	TGCGCA	1 cut(s)	358
PkrI	GCNGC	1 cut(s)	619
PshBI	ATTAAT	1 cut(s)	138
PsiI	TTATAA	1 cut(s)	210
PspFI	CCCAGC	1 cut(s)	115
RseI	CAYNNNNRTG	1 cut(s)	156
SaqAI	TTAA	2 cut(s)	138, 291
SatI	GCNGC	1 cut(s)	618
ScrFI	CCNGG	1 cut(s)	65
SduI	GDGCHC	1 cut(s)	17
SfaNI	GCATC	1 cut(s)	498
SmiMI	CAYNNNNRTG	1 cut(s)	156
SmlI	CTYRAG	1 cut(s)	269
SmoI	CTYRAG	1 cut(s)	269
Sse9I	AATT	4 cut(s)	139, 178, 232, 262
SsiI	CCGC	2 cut(s)	50, 471
SspMI	CTAG	1 cut(s)	582
StyD4I	CCNGG	1 cut(s)	63
StyI	CCWWGG	2 cut(s)	72, 96
TaiI	ACGT	1 cut(s)	525
TaqI	TCGA	1 cut(s)	56
TasI	AATT	4 cut(s)	139, 178, 232, 262
Tru1I	TTAA	2 cut(s)	138, 291
Tru9I	TTAA	2 cut(s)	138, 291
TseI	GCWGC	1 cut(s)	617
TspDTI	ATGAA	2 cut(s)	80, 329
VspI	ATTAAT	1 cut(s)	138
XapI	RAATTY	3 cut(s)	178, 232, 262
XspI	CTAG	1 cut(s)	582

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.