Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr4

Orthogroup ID

OG0006627

Physical Location & Seq

Genomic Coordinates Forward (+)

20674646 .. 20679899

Gene Structure 5254 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000017743

Sequence Viewer

CDS Protein Promoter (2k)

Length: 456 bp

ATGGCATTTCTTATCGGATCTATTTGGGGAGTTGGAGCTCAGCGATCATGGGCTGTTGTTGTTGTTAGAGGAGTCTCCTTAGAGGAGAAGAACCGCGACGGGGCTCCGGCGTTTTATGGCTTGTTGCCGGCGAGGGACTTGGTTGTCTATCTAGGTTACGGCAGATCGAGACGACGGAGGATAGTAGGGACGGAGGAGTTTAGCACGGTGGTAGGCAGATCCATGTTCTTGGAACCTGAGTTTGGGTGGTCTGATGTTGTCACCTGTTTGTTTGAACATGAAAAAGAGGACATAGAGAGAGCTGAGAAGGCCAGAAACAAAGTTGCTGCTACATTTATTTCTGCACCAAGTCCCCGAACCACCAAAAGCTCTGAGGCTTCTGTTGCTATAGTTTCTACATCCAAGAAGAAAAAACAAAGAACAGAAAAAATGAGTTTTGGAAAGGTAACATTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

152

Amino Acids

16.79

Weight (kDa)

9.88

Isoelectric Point (pI)

60.08

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006627)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G29760
fragaria_vesca	FvH4_3g38420
malus_domestica	MD03G1072100.v1.1 MD11G1076100.v1.1 MD11G1076300.v1.1 MD11G1076700.v1.1
prunus_persica	Prupe.6G058800_v2.0.a1
pyrus_communis	pycom03g05830 pycom12g05280
rosa_chinensis	RchiOBHm_Chr5g0069041 RchiOBHm_Chr5g0069081
rosa_laevigata	RLG00000017743 RLG00000036033
rosa_multiflora	Rmu_co8508453.1_g000001 Rmu_sc0000853.1_g000010 Rmu_sc0000853.1_g000011 Rmu_sc0000936.1_g000009
rosa_roxburghii	Rroxscaffold_1G00011680
rosa_rugosa	Rorug05G0395900
rosa_samantha	Rh5AG452500 Rh5AG482500 Rh5BG471800 Rh5BG503600 Rh5CG494200
rosa_wichuraiana	Rw0G006080 Rw5G042280

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	143
AccII	CGCG	1 cut(s)	96
AciI	CCGC	1 cut(s)	94
AclWI	GGATC	2 cut(s)	25, 213
AfiI	CCNNNNNNNGG	2 cut(s)	100, 242
AgsI	TTSAA	1 cut(s)	275
AjuI	GAANNNNNNNTTGG	2 cut(s)	225, 257
AluBI	AGCT	3 cut(s)	38, 302, 369
AluI	AGCT	3 cut(s)	38, 302, 369
Alw21I	GWGCWC	1 cut(s)	40
Alw26I	GTCTC	2 cut(s)	79, 163
AlwI	GGATC	2 cut(s)	25, 213
AoxI	GGCC	1 cut(s)	309
ApeKI	GCWGC	1 cut(s)	326
AsuHPI	GGTGA	1 cut(s)	253
BanII	GRGCYC	2 cut(s)	40, 106
Bbv12I	GWGCWC	1 cut(s)	40
BbvI	GCAGC	1 cut(s)	313
BceAI	ACGGC	1 cut(s)	175
BcoDI	GTCTC	2 cut(s)	79, 163
BfaI	CTAG	1 cut(s)	152
BfmI	CTRYAG	1 cut(s)	387
BisI	GCNGC	1 cut(s)	327
BlpI	GCTNAGC	1 cut(s)	39
BlsI	GCNGC	1 cut(s)	328
BmiI	GGNNCC	2 cut(s)	105, 234
Bpu1102I	GCTNAGC	1 cut(s)	39
Bsc4I	CCNNNNNNNGG	2 cut(s)	100, 242
Bse118I	RCCGGY	1 cut(s)	127
BseGI	GGATG	1 cut(s)	398
BseLI	CCNNNNNNNGG	2 cut(s)	100, 242
BseMII	CTCAG	4 cut(s)	53, 228, 294, 363
BseRI	GAGGAG	3 cut(s)	84, 98, 209
BseXI	GCAGC	1 cut(s)	313
BsgI	GTGCAG	1 cut(s)	327
Bsh1236I	CGCG	1 cut(s)	96
BshFI	GGCC	1 cut(s)	311
BsiHKAI	GWGCWC	1 cut(s)	40
BsiSI	CCGG	2 cut(s)	107, 128
BslFI	GGGAC	3 cut(s)	149, 202, 336
BslI	CCNNNNNNNGG	2 cut(s)	100, 242
BsmAI	GTCTC	2 cut(s)	79, 163
BsmBI	CGTCTC	1 cut(s)	163
BsmFI	GGGAC	3 cut(s)	149, 202, 336
BsnI	GGCC	1 cut(s)	311
Bsp1286I	GDGCHC	2 cut(s)	40, 106
Bsp143I	GATC	4 cut(s)	17, 44, 164, 218
Bsp1720I	GCTNAGC	1 cut(s)	39
BspACI	CCGC	1 cut(s)	94
BspANI	GGCC	1 cut(s)	311
BspCNI	CTCAG	4 cut(s)	52, 229, 295, 364
BspFNI	CGCG	1 cut(s)	96
BspLI	GGNNCC	2 cut(s)	105, 234
BspPI	GGATC	2 cut(s)	25, 213
BsrFI	RCCGGY	1 cut(s)	127
BssAI	RCCGGY	1 cut(s)	127
BssMI	GATC	4 cut(s)	17, 44, 164, 218
Bst4CI	ACNGT	1 cut(s)	208
BstC8I	GCNNGC	1 cut(s)	129
BstDEI	CTNAG	5 cut(s)	39, 79, 237, 303, 372
BstF5I	GGATG	1 cut(s)	398
BstFNI	CGCG	1 cut(s)	96
BstKTI	GATC	4 cut(s)	20, 47, 167, 221
BstMAI	GTCTC	2 cut(s)	79, 163
BstMBI	GATC	4 cut(s)	17, 44, 164, 218
BstMWI	GCNNNNNNNGC	2 cut(s)	308, 383
BstSFI	CTRYAG	1 cut(s)	387
BstUI	CGCG	1 cut(s)	96
BstV1I	GCAGC	1 cut(s)	313
BstX2I	RGATCY	2 cut(s)	17, 218
BstXI	CCANNNNNNTGG	1 cut(s)	229
BstYI	RGATCY	2 cut(s)	17, 218
BsuRI	GGCC	1 cut(s)	311
BtsCI	GGATG	1 cut(s)	398
Cac8I	GCNNGC	1 cut(s)	129
Cfr10I	RCCGGY	1 cut(s)	127
CviAII	CATG	3 cut(s)	48, 223, 278
CviJI	RGCY	8 cut(s)	38, 53, 104, 120, 302, 311, 369, 377
CviKI_1	RGCY	8 cut(s)	38, 53, 104, 120, 302, 311, 369, 377
DdeI	CTNAG	5 cut(s)	39, 79, 237, 303, 372
DpnI	GATC	4 cut(s)	19, 46, 166, 220
DpnII	GATC	4 cut(s)	17, 44, 164, 218
DrdI	GACNNNNNNGTC	1 cut(s)	143
DseDI	GACNNNNNNGTC	1 cut(s)	143
Ecl136II	GAGCTC	1 cut(s)	38
Eco24I	GRGCYC	2 cut(s)	40, 106
Eco53kI	GAGCTC	1 cut(s)	38
EcoICRI	GAGCTC	1 cut(s)	38
EcoT38I	GRGCYC	2 cut(s)	40, 106
Esp3I	CGTCTC	1 cut(s)	163
FaeI	CATG	3 cut(s)	51, 226, 281
FaiI	YATR	6 cut(s)	49, 117, 224, 279, 293, 389
FaqI	GGGAC	3 cut(s)	149, 202, 336
FatI	CATG	3 cut(s)	47, 222, 277
Fnu4HI	GCNGC	1 cut(s)	327
FokI	GGATG	1 cut(s)	385
FriOI	GRGCYC	2 cut(s)	40, 106
Fsp4HI	GCNGC	1 cut(s)	327
FspBI	CTAG	1 cut(s)	152
GluI	GCNGC	1 cut(s)	327
HaeIII	GGCC	1 cut(s)	311
HapII	CCGG	2 cut(s)	107, 128
Hin1II	CATG	3 cut(s)	51, 226, 281
HinfI	GANTC	1 cut(s)	72
HpaII	CCGG	2 cut(s)	107, 128
HphI	GGTGA	1 cut(s)	253
Hpy188I	TCNGA	3 cut(s)	17, 253, 373
Hpy188III	TCNNGA	1 cut(s)	168
Hpy99I	CGWCG	2 cut(s)	101, 177
HpyAV	CCTTC	1 cut(s)	301
HpyCH4III	ACNGT	1 cut(s)	208
HpyCH4V	TGCA	1 cut(s)	344
HpyF10VI	GCNNNNNNNGC	2 cut(s)	308, 383
HpyF3I	CTNAG	5 cut(s)	39, 79, 237, 303, 372
Hsp92II	CATG	3 cut(s)	51, 226, 281
KroI	GCCGGC	1 cut(s)	127
KroNI	GCCGGC	1 cut(s)	129
Kzo9I	GATC	4 cut(s)	17, 44, 164, 218
LmnI	GCTCC	2 cut(s)	35, 109
LpnPI	CCDG	5 cut(s)	120, 141, 249, 277, 325
Lsp1109I	GCAGC	1 cut(s)	313
MaeI	CTAG	1 cut(s)	152
MaeIII	GTNAC	3 cut(s)	155, 259, 445
MalI	GATC	4 cut(s)	19, 46, 166, 220
MboI	GATC	4 cut(s)	17, 44, 164, 218
MboII	GAAGA	2 cut(s)	100, 418
MflI	RGATCY	2 cut(s)	17, 218
MhlI	GDGCHC	2 cut(s)	40, 106
MlyI	GAGTC	1 cut(s)	81
MmeI	TCCRAC	1 cut(s)	13
MnlI	CCTC	7 cut(s)	62, 76, 126, 171, 187, 280, 367
MroNI	GCCGGC	1 cut(s)	127
MspI	CCGG	2 cut(s)	107, 128
MvnI	CGCG	1 cut(s)	96
MwoI	GCNNNNNNNGC	2 cut(s)	308, 383
NaeI	GCCGGC	1 cut(s)	129
NdeII	GATC	4 cut(s)	17, 44, 164, 218
NgoMIV	GCCGGC	1 cut(s)	127
NlaIII	CATG	3 cut(s)	51, 226, 281
NlaIV	GGNNCC	2 cut(s)	105, 234
NmuCI	GTSAC	1 cut(s)	259
PdiI	GCCGGC	1 cut(s)	129
PkrI	GCNGC	1 cut(s)	328
PleI	GAGTC	1 cut(s)	80
PpsI	GAGTC	1 cut(s)	80
Psp124BI	GAGCTC	1 cut(s)	40
PspN4I	GGNNCC	2 cut(s)	105, 234
PsuI	RGATCY	2 cut(s)	17, 218
SacI	GAGCTC	1 cut(s)	40
SatI	GCNGC	1 cut(s)	327
Sau3AI	GATC	4 cut(s)	17, 44, 164, 218
SchI	GAGTC	1 cut(s)	81
SduI	GDGCHC	2 cut(s)	40, 106
SetI	ASST	7 cut(s)	40, 157, 238, 266, 304, 371, 447
SfcI	CTRYAG	1 cut(s)	387
SsiI	CCGC	1 cut(s)	94
SspMI	CTAG	1 cut(s)	152
SstI	GAGCTC	1 cut(s)	40
TaaI	ACNGT	1 cut(s)	208
TaqI	TCGA	1 cut(s)	167
TseFI	GTSAC	1 cut(s)	259
TseI	GCWGC	1 cut(s)	326
Tsp45I	GTSAC	1 cut(s)	259
TspDTI	ATGAA	1 cut(s)	294
TspGWI	ACGGA	2 cut(s)	190, 206
XspI	CTAG	1 cut(s)	152

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.