Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8508453.1

Orthogroup ID

OG0006627

Physical Location & Seq

Genomic Coordinates Reverse (-)

1 .. 711

Gene Structure 711 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8508453.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 696 bp

atggcaactctaggcaccccagtcccacgtcatcccaccactccctccccaaccgtcaataacgaccttcgcttcccaacccaaccgcttctcccactgatagaccaatgcaccaccatcaaccagctcaagcaagtccatgcccaaatgctcaaaacagccctattcttcgacccttatgccgccagtaagctcatcacggctgctgcgctctcttccttctcgagcctcgactatgcacgccaagtgttcgacgaaattcctgacccaaatctgttcacttggaacgccctcattcgcgcgtacgcctccagccccgacccagttgaaagcattctcctatttctgcagatgcttgacgagtgtgacgagcgccccaataagttcactttcccttttctgctcaaggcggcgtcggagctccgggcttccaaggttgggagaggttttcatgccatggtgataaaagccgagctgggttcggatgtttatattgttaattcgctcattcacttttatgggtcgtgcggggatttggatttggcgcgtttggtgtttttgaagacttacaaaaaggatgttgttacttggaattctgttatcacggcttttgctcaggggaattgccctgaggtggcgttggagttgtttaaggaaatggaggcggagaatatgaagccgaatgatgtcaccatg

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006139 GO:0006396 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009507 GO:0009536 GO:0009987 GO:0010467 GO:0016070 GO:0016787 GO:0016788 GO:0031425 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DYW_deaminase PPR

Protein Analysis

232

Amino Acids

25.88

Weight (kDa)

5.37

Isoelectric Point (pI)

38.43

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006627)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G29760
fragaria_vesca	FvH4_3g38420
malus_domestica	MD03G1072100.v1.1 MD11G1076100.v1.1 MD11G1076300.v1.1 MD11G1076700.v1.1
prunus_persica	Prupe.6G058800_v2.0.a1
pyrus_communis	pycom03g05830 pycom12g05280
rosa_chinensis	RchiOBHm_Chr5g0069041 RchiOBHm_Chr5g0069081
rosa_laevigata	RLG00000017743 RLG00000036033
rosa_multiflora	Rmu_co8508453.1_g000001 Rmu_sc0000853.1_g000010 Rmu_sc0000853.1_g000011 Rmu_sc0000936.1_g000009
rosa_roxburghii	Rroxscaffold_1G00011680
rosa_rugosa	Rorug05G0395900
rosa_samantha	Rh5AG452500 Rh5AG482500 Rh5BG471800 Rh5BG503600 Rh5CG494200
rosa_wichuraiana	Rw0G006080 Rw5G042280

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	14
AccII	CGCG	3 cut(s)	300, 302, 547
AciI	CCGC	5 cut(s)	86, 183, 410, 528, 665
AcsI	RAATTY	2 cut(s)	258, 592
AcyI	GRCGYC	1 cut(s)	413
AfaI	GTAC	1 cut(s)	305
AfiI	CCNNNNNNNGG	2 cut(s)	438, 634
AgsI	TTSAA	2 cut(s)	329, 562
AjiI	CACGTC	1 cut(s)	29
AluBI	AGCT	4 cut(s)	127, 193, 421, 475
AluI	AGCT	4 cut(s)	127, 193, 421, 475
Alw21I	GWGCWC	1 cut(s)	423
Ama87I	CYCGRG	1 cut(s)	223
ApeKI	GCWGC	2 cut(s)	203, 206
ApoI	RAATTY	2 cut(s)	258, 592
Asp700I	GAANNNNTTC	1 cut(s)	333
AspLEI	GCGC	4 cut(s)	211, 302, 375, 547
AsuC2I	CCSGG	1 cut(s)	425
AsuHPI	GGTGA	2 cut(s)	472, 682
AvaI	CYCGRG	1 cut(s)	223
AxyI	CCTNAGG	1 cut(s)	630
BanI	GGYRCC	1 cut(s)	14
BanII	GRGCYC	1 cut(s)	423
BbsI	GAAGAC	1 cut(s)	569
Bbv12I	GWGCWC	1 cut(s)	423
BbvI	GCAGC	2 cut(s)	190, 193
BccI	CCATC	1 cut(s)	125
BceAI	ACGGC	2 cut(s)	216, 621
BcgI	CGANNNNNNTGC	2 cut(s)	161, 195
BcnI	CCSGG	1 cut(s)	425
BfaI	CTAG	1 cut(s)	11
BfmI	CTRYAG	1 cut(s)	347
BfoI	RGCGCY	1 cut(s)	376
BisI	GCNGC	4 cut(s)	183, 204, 207, 411
BlsI	GCNGC	4 cut(s)	184, 205, 208, 412
Bme1390I	CCNGG	1 cut(s)	425
BmeT110I	CYCGRG	1 cut(s)	223
BmgBI	CACGTC	1 cut(s)	29
BmiI	GGNNCC	1 cut(s)	16
BmrFI	CCNGG	1 cut(s)	425
BmrI	ACTGGG	2 cut(s)	14, 317
BmsI	GCATC	1 cut(s)	342
BmuI	ACTGGG	2 cut(s)	14, 317
BpiI	GAAGAC	1 cut(s)	569
BpmI	CTGGAG	1 cut(s)	295
Bpu10I	CCTNAGC	1 cut(s)	615
BpuEI	CTTGAG	2 cut(s)	113, 389
BpuMI	CCSGG	1 cut(s)	425
BsaHI	GRCGYC	1 cut(s)	413
BsaJI	CCNNGG	2 cut(s)	432, 456
BsaXI	ACNNNNNCTCC	2 cut(s)	75, 105
Bsc4I	CCNNNNNNNGG	2 cut(s)	438, 634
Bse1I	ACTGG	3 cut(s)	20, 186, 323
Bse21I	CCTNAGG	1 cut(s)	630
BseDI	CCNNGG	2 cut(s)	432, 456
BseGI	GGATG	3 cut(s)	31, 490, 583
BseLI	CCNNNNNNNGG	2 cut(s)	438, 634
BseMII	CTCAG	2 cut(s)	621, 629
BseNI	ACTGG	3 cut(s)	20, 186, 323
BseXI	GCAGC	2 cut(s)	190, 193
BseYI	CCCAGC	1 cut(s)	475
Bsh1236I	CGCG	3 cut(s)	300, 302, 547
BshNI	GGYRCC	1 cut(s)	14
BsiHKAI	GWGCWC	1 cut(s)	423
BsiHKCI	CYCGRG	1 cut(s)	223
BsiSI	CCGG	1 cut(s)	424
BsiWI	CGTACG	1 cut(s)	303
BslFI	GGGAC	1 cut(s)	8
BslI	CCNNNNNNNGG	2 cut(s)	438, 634
BsmFI	GGGAC	1 cut(s)	8
BsmI	GAATGC	1 cut(s)	333
BsoBI	CYCGRG	1 cut(s)	223
Bsp1286I	GDGCHC	1 cut(s)	423
Bsp19I	CCATGG	1 cut(s)	456
BspACI	CCGC	5 cut(s)	86, 183, 410, 528, 665
BspCNI	CTCAG	2 cut(s)	622, 628
BspFNI	CGCG	3 cut(s)	300, 302, 547
BspLI	GGNNCC	1 cut(s)	16
BspMAI	CTGCAG	1 cut(s)	351
BspT107I	GGYRCC	1 cut(s)	14
BsrI	ACTGG	3 cut(s)	20, 186, 323
BssECI	CCNNGG	2 cut(s)	432, 456
BssNI	GRCGYC	1 cut(s)	413
BssT1I	CCWWGG	2 cut(s)	432, 456
Bst4CI	ACNGT	1 cut(s)	55
Bst6I	CTCTTC	1 cut(s)	220
BstACI	GRCGYC	1 cut(s)	413
BstC8I	GCNNGC	1 cut(s)	241
BstDEI	CTNAG	2 cut(s)	615, 630
BstDSI	CCRYGG	1 cut(s)	456
BstF5I	GGATG	3 cut(s)	31, 490, 583
BstFNI	CGCG	3 cut(s)	300, 302, 547
BstH2I	RGCGCY	1 cut(s)	376
BstHHI	GCGC	4 cut(s)	211, 302, 375, 547
BstSCI	CCNGG	1 cut(s)	423
BstSFI	CTRYAG	1 cut(s)	347
BstUI	CGCG	3 cut(s)	300, 302, 547
BstV1I	GCAGC	2 cut(s)	190, 193
BstV2I	GAAGAC	1 cut(s)	569
Bsu36I	CCTNAGG	1 cut(s)	630
BtgI	CCRYGG	1 cut(s)	456
BtrI	CACGTC	1 cut(s)	29
BtsCI	GGATG	3 cut(s)	31, 490, 583
BtsIMutI	CAGTG	1 cut(s)	95
Cac8I	GCNNGC	1 cut(s)	241
CfoI	GCGC	4 cut(s)	211, 302, 375, 547
CseI	GACGC	1 cut(s)	402
Csp6I	GTAC	1 cut(s)	304
CviAII	CATG	4 cut(s)	140, 452, 457, 694
CviQI	GTAC	1 cut(s)	304
DdeI	CTNAG	2 cut(s)	615, 630
Eam1104I	CTCTTC	1 cut(s)	220
EarI	CTCTTC	1 cut(s)	220
EciI	GGCGGA	1 cut(s)	680
Ecl136II	GAGCTC	1 cut(s)	421
Eco130I	CCWWGG	2 cut(s)	432, 456
Eco24I	GRGCYC	1 cut(s)	423
Eco53kI	GAGCTC	1 cut(s)	421
Eco81I	CCTNAGG	1 cut(s)	630
Eco88I	CYCGRG	1 cut(s)	223
EcoICRI	GAGCTC	1 cut(s)	421
EcoRI	GAATTC	1 cut(s)	592
EcoT14I	CCWWGG	2 cut(s)	432, 456
EcoT38I	GRGCYC	1 cut(s)	423
ErhI	CCWWGG	2 cut(s)	432, 456
FaeI	CATG	3 cut(s)	143, 455, 460
FaiI	YATR	9 cut(s)	141, 180, 237, 453, 458, 492, 519, 674, 695
FaqI	GGGAC	1 cut(s)	8
FatI	CATG	3 cut(s)	139, 451, 456
FauI	CCCGC	1 cut(s)	521
Fnu4HI	GCNGC	4 cut(s)	183, 204, 207, 411
FokI	GGATG	3 cut(s)	18, 497, 590
FriOI	GRGCYC	1 cut(s)	423
Fsp4HI	GCNGC	4 cut(s)	183, 204, 207, 411
FspBI	CTAG	1 cut(s)	11
GlaI	GCGC	4 cut(s)	210, 301, 374, 546
GluI	GCNGC	4 cut(s)	183, 204, 207, 411
GsaI	CCCAGC	1 cut(s)	479
GsuI	CTGGAG	1 cut(s)	295
HaeII	RGCGCY	1 cut(s)	376
HapII	CCGG	1 cut(s)	424
HgaI	GACGC	1 cut(s)	402
HhaI	GCGC	4 cut(s)	211, 302, 375, 547
Hin1I	GRCGYC	1 cut(s)	413
Hin1II	CATG	3 cut(s)	143, 455, 460
Hin6I	GCGC	4 cut(s)	209, 300, 373, 545
HinP1I	GCGC	4 cut(s)	209, 300, 373, 545
HpaII	CCGG	1 cut(s)	424
HphI	GGTGA	2 cut(s)	472, 682
Hpy166II	GTNNAC	2 cut(s)	279, 387
Hpy188I	TCNGA	2 cut(s)	418, 484
Hpy188III	TCNNGA	2 cut(s)	223, 263
Hpy8I	GTNNAC	2 cut(s)	279, 387
Hpy99I	CGWCG	2 cut(s)	257, 418
HpyAV	CCTTC	2 cut(s)	77, 229
HpyCH4III	ACNGT	1 cut(s)	55
HpyCH4IV	ACGT	1 cut(s)	28
HpyCH4V	TGCA	3 cut(s)	111, 239, 349
HpyF3I	CTNAG	2 cut(s)	615, 630
HpySE526I	ACGT	1 cut(s)	28
Hsp92I	GRCGYC	1 cut(s)	413
Hsp92II	CATG	3 cut(s)	143, 455, 460
HspAI	GCGC	4 cut(s)	209, 300, 373, 545
LmnI	GCTCC	2 cut(s)	418, 426
Lsp1109I	GCAGC	2 cut(s)	190, 193
LweI	GCATC	1 cut(s)	342
MaeI	CTAG	1 cut(s)	11
MaeII	ACGT	1 cut(s)	28
MaeIII	GTNAC	3 cut(s)	365, 583, 688
MboII	GAAGA	3 cut(s)	160, 207, 574
MhlI	GDGCHC	1 cut(s)	423
MluCI	AATT	4 cut(s)	258, 499, 592, 622
MmeI	TCCRAC	2 cut(s)	396, 621
MnlI	CCTC	7 cut(s)	55, 239, 302, 319, 437, 625, 655
MroXI	GAANNNNTTC	1 cut(s)	333
MseI	TTAA	2 cut(s)	498, 651
MslI	CAYNNNNRTG	1 cut(s)	516
MspI	CCGG	1 cut(s)	424
MspR9I	CCNGG	1 cut(s)	425
Mva1269I	GAATGC	1 cut(s)	333
MvnI	CGCG	3 cut(s)	300, 302, 547
NciI	CCSGG	1 cut(s)	425
NcoI	CCATGG	1 cut(s)	456
NlaIII	CATG	3 cut(s)	143, 455, 460
NlaIV	GGNNCC	1 cut(s)	16
NmeAIII	GCCGAG	1 cut(s)	496
NmuCI	GTSAC	2 cut(s)	365, 688
PaeR7I	CTCGAG	1 cut(s)	223
PcsI	WCGNNNNNNNCGW	1 cut(s)	366
PctI	GAATGC	1 cut(s)	333
PdmI	GAANNNNTTC	1 cut(s)	333
Pfl23II	CGTACG	1 cut(s)	303
PkrI	GCNGC	4 cut(s)	184, 205, 208, 412
Psp124BI	GAGCTC	1 cut(s)	423
PspFI	CCCAGC	1 cut(s)	475
PspLI	CGTACG	1 cut(s)	303
PspN4I	GGNNCC	1 cut(s)	16
PstI	CTGCAG	1 cut(s)	351
RsaI	GTAC	1 cut(s)	305
RsaNI	GTAC	1 cut(s)	304
RseI	CAYNNNNRTG	1 cut(s)	516
SacI	GAGCTC	1 cut(s)	423
SaqAI	TTAA	2 cut(s)	498, 651
SatI	GCNGC	4 cut(s)	183, 204, 207, 411
ScrFI	CCNGG	1 cut(s)	425
SduI	GDGCHC	1 cut(s)	423
SetI	ASST	9 cut(s)	31, 69, 129, 195, 423, 438, 448, 477, 636
SfaNI	GCATC	1 cut(s)	342
SfcI	CTRYAG	1 cut(s)	347
Sfr274I	CTCGAG	1 cut(s)	223
SlaI	CTCGAG	1 cut(s)	223
SmiMI	CAYNNNNRTG	1 cut(s)	516
SmlI	CTYRAG	3 cut(s)	128, 223, 404
SmoI	CTYRAG	3 cut(s)	128, 223, 404
Sse9I	AATT	4 cut(s)	258, 499, 592, 622
SsiI	CCGC	5 cut(s)	86, 183, 410, 528, 665
SspMI	CTAG	1 cut(s)	11
SstI	GAGCTC	1 cut(s)	423
StyD4I	CCNGG	1 cut(s)	423
StyI	CCWWGG	2 cut(s)	432, 456
TaaI	ACNGT	1 cut(s)	55
TaiI	ACGT	1 cut(s)	31
TaqI	TCGA	4 cut(s)	171, 224, 231, 252
TasI	AATT	4 cut(s)	258, 499, 592, 622
TauI	GCSGC	2 cut(s)	185, 413
Tru1I	TTAA	2 cut(s)	498, 651
Tru9I	TTAA	2 cut(s)	498, 651
TscAI	CASTG	1 cut(s)	102
TseFI	GTSAC	2 cut(s)	365, 688
TseI	GCWGC	2 cut(s)	203, 206
Tsp45I	GTSAC	2 cut(s)	365, 688
TspDTI	ATGAA	2 cut(s)	440, 689
TspRI	CASTG	1 cut(s)	102
XapI	RAATTY	2 cut(s)	258, 592
XhoI	CTCGAG	1 cut(s)	223
XmnI	GAANNNNTTC	1 cut(s)	333
XspI	CTAG	1 cut(s)	11

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.