Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb3

Orthogroup ID

OG0010552

Physical Location & Seq

Genomic Coordinates Reverse (-)

37478061 .. 37478945

Gene Structure 885 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_3g45030.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 885 bp

ATGCCCAACTTGGAGGATCAATTCTATTGCTGCAGCGCAATCCAATTCTCTGGGGTTGCTCGGCACGGTAAGAGACTTTGGATCAGATCGAGGGTTGCCCCCATCCGTTTTCGTCTCTTGAAGCTAATCCACACCTGTCGCCGTTGGGTGGACCCATCCGGCGTCGACATGGTTCCCATCACATTGAAACTCTACGACCAAACAGTAACTTTCCCCGGAGACGAATTCCGACTAGGCCCCAGCGACATTAGTTACGGCGAATCGAGTTGGGTCACCGAAAGACGGTTTCAAGTCCCTGTCTCTAATTTCCAGAGAGCAGCTTATGCAAGGATCATTACTGGTTATCTTAAGACCTTGCGAGTCCCTGAAGATAACCACGCAGCTTTTATTCAGGAAATATTCCGCGTGATTCTCCGGGCCGTCCCTGGAATTCCCATTAGTGTGAGGATAGTGCGTTTCACTCGTCAAGTAGCCCCAAAAGGTTTCACATCGTATATCAAGGGGTTGGAGGAAGTGAGGGTTCATAGTTTGGAGGAAGCCAGTACTGAAAACACACCCTGTGCTATTTGTACGGAGGACCTTGATCCCTTTCGAGGAGAGATTGATAATGATGATGATGAGCAGATTATTCGCTTGCCCTGCTTGCACCTTTATCACCGAGATTGCATTGTCCCCTGGCTGAAGAGGTGTCTGGTGTGTCCCCTGTGTCGACACTCCATGTCTCTAGTGAAAGTGAAAAGGACCTCAACCAGGCGGTGTTGGCCTTCGCTGTTCAACATTTCTTCTGGCGGTGTAATAACTGCTATGAGGATACTCACAAGCCATGCGCTGCCGCCTGTGCTGTATATGTATTTTATGAAGCGTCGTCTTTCTCACTTGAAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-RING_2 zf-rbx1

Protein Analysis

295

Amino Acids

33.98

Weight (kDa)

9.48

Isoelectric Point (pI)

57.85

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-rbx1	PF12678	187 - 237	9.5e-09	RING-H2 zinc finger domain
zf-RING_2	PF13639	187 - 237	5.4e-08	Ring finger domain
zf-C3HC4	PF00097	187 - 236	6.7e-06	Zinc finger, C3HC4 type (RING finger)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010552)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g45030 FvH4_5g04570 FvH4_5g05561 FvH4_5g05590 FvH4_5g09840 FvH4_5g09840 FvH4_6g41381 FvH4_6g41383
rosa_chinensis	RchiOBHm_Chr5g0082881
rosa_multiflora	Rmu_co8151450.1_g000001 Rmu_sc0001381.1_g000010 Rmu_sc0023803.1_g000002
rosa_roxburghii	Rroxscaffold_1G00001560
rosa_rugosa	Rorug05G0480600 Rorug05G0480800 Rorug07G0017100
rosa_samantha	Rh1DG078100 Rh5AG531000 Rh5DG566300
rosa_wichuraiana	Rw5G049770 Rw7G012350

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	2 cut(s)	165, 709
AccII	CGCG	1 cut(s)	405
AciI	CCGC	4 cut(s)	403, 754, 789, 833
AclWI	GGATC	4 cut(s)	24, 89, 338, 578
AcsI	RAATTY	2 cut(s)	224, 429
AcuI	CTGAAG	2 cut(s)	387, 701
AcyI	GRCGYC	1 cut(s)	162
AdeI	CACNNNGTG	1 cut(s)	560
AfaI	GTAC	2 cut(s)	544, 571
AfiI	CCNNNNNNNGG	4 cut(s)	148, 282, 593, 750
AflII	CTTAAG	1 cut(s)	347
AgsI	TTSAA	5 cut(s)	121, 187, 290, 775, 880
AjnI	CCWGG	3 cut(s)	424, 674, 749
AluBI	AGCT	3 cut(s)	124, 320, 383
AluI	AGCT	3 cut(s)	124, 320, 383
Alw26I	GTCTC	5 cut(s)	67, 119, 213, 304, 726
AlwI	GGATC	4 cut(s)	24, 89, 338, 578
AoxI	GGCC	3 cut(s)	235, 417, 761
ApeKI	GCWGC	5 cut(s)	30, 33, 317, 380, 829
ApoI	RAATTY	2 cut(s)	224, 429
AspLEI	GCGC	2 cut(s)	38, 829
AspS9I	GGNCC	5 cut(s)	151, 236, 417, 577, 741
AsuC2I	CCSGG	2 cut(s)	216, 416
AsuHPI	GGTGA	2 cut(s)	265, 647
AvaII	GGWCC	3 cut(s)	151, 577, 741
BbvI	GCAGC	5 cut(s)	17, 45, 329, 392, 816
BccI	CCATC	3 cut(s)	110, 163, 185
BceAI	ACGGC	3 cut(s)	126, 271, 404
BcgI	CGANNNNNNTGC	2 cut(s)	611, 645
BciT130I	CCWGG	3 cut(s)	426, 676, 751
BciVI	GTATCC	1 cut(s)	804
BcnI	CCSGG	2 cut(s)	216, 416
BcoDI	GTCTC	5 cut(s)	67, 119, 213, 304, 726
BfaI	CTAG	2 cut(s)	233, 725
BfmI	CTRYAG	1 cut(s)	31
BfrI	CTTAAG	1 cut(s)	347
BfuI	GTATCC	1 cut(s)	804
BisI	GCNGC	6 cut(s)	31, 34, 318, 381, 830, 833
BlsI	GCNGC	6 cut(s)	32, 35, 319, 382, 831, 834
BmcAI	AGTACT	1 cut(s)	544
Bme1390I	CCNGG	5 cut(s)	216, 416, 426, 676, 751
Bme18I	GGWCC	3 cut(s)	151, 577, 741
BmgT120I	GGNCC	5 cut(s)	151, 236, 417, 577, 741
BmiI	GGNNCC	3 cut(s)	153, 174, 238
BmrFI	CCNGG	5 cut(s)	216, 416, 426, 676, 751
BpuMI	CCSGG	2 cut(s)	216, 416
BsaHI	GRCGYC	1 cut(s)	162
BsaJI	CCNNGG	3 cut(s)	214, 424, 674
Bsc4I	CCNNNNNNNGG	4 cut(s)	148, 282, 593, 750
Bse1I	ACTGG	2 cut(s)	343, 540
BseBI	CCWGG	3 cut(s)	426, 676, 751
BseDI	CCNNGG	3 cut(s)	214, 424, 674
BseGI	GGATG	2 cut(s)	102, 155
BseLI	CCNNNNNNNGG	4 cut(s)	148, 282, 593, 750
BseNI	ACTGG	2 cut(s)	343, 540
BseRI	GAGGAG	1 cut(s)	609
BseXI	GCAGC	5 cut(s)	17, 45, 329, 392, 816
BseYI	CCCAGC	1 cut(s)	239
Bsh1236I	CGCG	1 cut(s)	405
BshFI	GGCC	3 cut(s)	237, 419, 763
BsiSI	CCGG	3 cut(s)	159, 216, 415
BslFI	GGGAC	5 cut(s)	278, 347, 407, 656, 684
BslI	CCNNNNNNNGG	4 cut(s)	148, 282, 593, 750
BsmAI	GTCTC	5 cut(s)	67, 119, 213, 304, 726
BsmBI	CGTCTC	2 cut(s)	119, 213
BsmFI	GGGAC	5 cut(s)	278, 347, 407, 656, 684
BsnI	GGCC	3 cut(s)	237, 419, 763
Bsp143I	GATC	5 cut(s)	16, 81, 86, 330, 583
BspACI	CCGC	4 cut(s)	403, 754, 789, 833
BspANI	GGCC	3 cut(s)	237, 419, 763
BspFNI	CGCG	1 cut(s)	405
BspLI	GGNNCC	3 cut(s)	153, 174, 238
BspMAI	CTGCAG	1 cut(s)	35
BspPI	GGATC	4 cut(s)	24, 89, 338, 578
BspTI	CTTAAG	1 cut(s)	347
BsrI	ACTGG	2 cut(s)	343, 540
BssECI	CCNNGG	3 cut(s)	214, 424, 674
BssMI	GATC	5 cut(s)	16, 81, 86, 330, 583
BssNI	GRCGYC	1 cut(s)	162
Bst2UI	CCWGG	3 cut(s)	426, 676, 751
Bst4CI	ACNGT	3 cut(s)	68, 205, 285
Bst6I	CTCTTC	1 cut(s)	677
BstACI	GRCGYC	1 cut(s)	162
BstAFI	CTTAAG	1 cut(s)	347
BstAPI	GCANNNNNTGC	1 cut(s)	323
BstC8I	GCNNGC	2 cut(s)	635, 644
BstEII	GGTNACC	1 cut(s)	271
BstENI	CCTNNNNNAGG	1 cut(s)	748
BstF5I	GGATG	2 cut(s)	102, 155
BstFNI	CGCG	1 cut(s)	405
BstHHI	GCGC	2 cut(s)	38, 829
BstKTI	GATC	5 cut(s)	19, 84, 89, 333, 586
BstMAI	GTCTC	5 cut(s)	67, 119, 213, 304, 726
BstMBI	GATC	5 cut(s)	16, 81, 86, 330, 583
BstMWI	GCNNNNNNNGC	5 cut(s)	323, 639, 643, 760, 838
BstNI	CCWGG	3 cut(s)	426, 676, 751
BstPI	GGTNACC	1 cut(s)	271
BstSCI	CCNGG	5 cut(s)	214, 414, 424, 674, 749
BstSFI	CTRYAG	1 cut(s)	31
BstUI	CGCG	1 cut(s)	405
BstV1I	GCAGC	5 cut(s)	17, 45, 329, 392, 816
BstXI	CCANNNNNNTGG	1 cut(s)	50
BsuI	GTATCC	1 cut(s)	804
BsuRI	GGCC	3 cut(s)	237, 419, 763
BtsCI	GGATG	2 cut(s)	102, 155
Cac8I	GCNNGC	2 cut(s)	635, 644
CfoI	GCGC	2 cut(s)	38, 829
Cfr13I	GGNCC	5 cut(s)	151, 236, 417, 577, 741
CseI	GACGC	2 cut(s)	151, 851
Csp6I	GTAC	2 cut(s)	543, 570
CviAII	CATG	3 cut(s)	169, 718, 824
CviQI	GTAC	2 cut(s)	543, 570
DpnI	GATC	5 cut(s)	18, 83, 88, 332, 585
DpnII	GATC	5 cut(s)	16, 81, 86, 330, 583
DraIII	CACNNNGTG	1 cut(s)	560
Eam1104I	CTCTTC	1 cut(s)	677
EarI	CTCTTC	1 cut(s)	677
Eco47I	GGWCC	3 cut(s)	151, 577, 741
Eco57I	CTGAAG	2 cut(s)	387, 701
Eco91I	GGTNACC	1 cut(s)	271
EcoNI	CCTNNNNNAGG	1 cut(s)	748
EcoO109I	RGGNCCY	3 cut(s)	236, 577, 741
EcoO65I	GGTNACC	1 cut(s)	271
EcoRI	GAATTC	2 cut(s)	224, 429
EcoRII	CCWGG	3 cut(s)	424, 674, 749
Esp3I	CGTCTC	2 cut(s)	119, 213
FaeI	CATG	3 cut(s)	172, 721, 827
FaqI	GGGAC	5 cut(s)	278, 347, 407, 656, 684
FatI	CATG	3 cut(s)	168, 717, 823
FblI	GTMKAC	2 cut(s)	165, 709
Fnu4HI	GCNGC	6 cut(s)	31, 34, 318, 381, 830, 833
FokI	GGATG	2 cut(s)	89, 142
Fsp4HI	GCNGC	6 cut(s)	31, 34, 318, 381, 830, 833
FspBI	CTAG	2 cut(s)	233, 725
GlaI	GCGC	2 cut(s)	37, 828
GluI	GCNGC	6 cut(s)	31, 34, 318, 381, 830, 833
GsaI	CCCAGC	1 cut(s)	243
HaeIII	GGCC	3 cut(s)	237, 419, 763
HapII	CCGG	3 cut(s)	159, 216, 415
HgaI	GACGC	2 cut(s)	151, 851
HhaI	GCGC	2 cut(s)	38, 829
Hin1I	GRCGYC	1 cut(s)	162
Hin1II	CATG	3 cut(s)	172, 721, 827
Hin6I	GCGC	2 cut(s)	36, 827
HinP1I	GCGC	2 cut(s)	36, 827
HincII	GTYRAC	2 cut(s)	166, 710
HindII	GTYRAC	2 cut(s)	166, 710
HinfI	GANTC	3 cut(s)	260, 360, 409
HpaII	CCGG	3 cut(s)	159, 216, 415
HphI	GGTGA	2 cut(s)	265, 647
Hpy166II	GTNNAC	3 cut(s)	151, 166, 710
Hpy188I	TCNGA	2 cut(s)	86, 230
Hpy188III	TCNNGA	3 cut(s)	118, 310, 392
Hpy8I	GTNNAC	3 cut(s)	151, 166, 710
Hpy99I	CGWCG	2 cut(s)	167, 867
HpyAV	CCTTC	1 cut(s)	774
HpyCH4III	ACNGT	3 cut(s)	68, 205, 285
HpyCH4V	TGCA	4 cut(s)	33, 326, 646, 666
HpyF10VI	GCNNNNNNNGC	5 cut(s)	323, 639, 643, 760, 838
Hsp92I	GRCGYC	1 cut(s)	162
Hsp92II	CATG	3 cut(s)	172, 721, 827
HspAI	GCGC	2 cut(s)	36, 827
Kzo9I	GATC	5 cut(s)	16, 81, 86, 330, 583
Lsp1109I	GCAGC	5 cut(s)	17, 45, 329, 392, 816
MaeI	CTAG	2 cut(s)	233, 725
MaeIII	GTNAC	3 cut(s)	205, 251, 271
MalI	GATC	5 cut(s)	18, 83, 88, 332, 585
MboI	GATC	5 cut(s)	16, 81, 86, 330, 583
MboII	GAAGA	3 cut(s)	380, 694, 774
MluCI	AATT	5 cut(s)	20, 44, 224, 304, 429
MlyI	GAGTC	1 cut(s)	369
MmeI	TCCRAC	2 cut(s)	253, 486
MseI	TTAA	1 cut(s)	348
MslI	CAYNNNNRTG	1 cut(s)	440
MspCI	CTTAAG	1 cut(s)	347
MspI	CCGG	3 cut(s)	159, 216, 415
MspR9I	CCNGG	5 cut(s)	216, 416, 426, 676, 751
MvaI	CCWGG	3 cut(s)	426, 676, 751
MvnI	CGCG	1 cut(s)	405
MwoI	GCNNNNNNNGC	5 cut(s)	323, 639, 643, 760, 838
NciI	CCSGG	2 cut(s)	216, 416
NdeII	GATC	5 cut(s)	16, 81, 86, 330, 583
NlaIII	CATG	3 cut(s)	172, 721, 827
NlaIV	GGNNCC	3 cut(s)	153, 174, 238
NmeAIII	GCCGAG	1 cut(s)	40
NmuCI	GTSAC	1 cut(s)	271
PfeI	GAWTC	2 cut(s)	260, 409
PkrI	GCNGC	6 cut(s)	32, 35, 319, 382, 831, 834
PleI	GAGTC	1 cut(s)	368
PpsI	GAGTC	1 cut(s)	368
PpuMI	RGGWCCY	2 cut(s)	577, 741
Psp5II	RGGWCCY	2 cut(s)	577, 741
Psp6I	CCWGG	3 cut(s)	424, 674, 749
PspEI	GGTNACC	1 cut(s)	271
PspFI	CCCAGC	1 cut(s)	239
PspGI	CCWGG	3 cut(s)	424, 674, 749
PspN4I	GGNNCC	3 cut(s)	153, 174, 238
PspPI	GGNCC	5 cut(s)	151, 236, 417, 577, 741
PspPPI	RGGWCCY	2 cut(s)	577, 741
PstI	CTGCAG	1 cut(s)	35
RsaI	GTAC	2 cut(s)	544, 571
RsaNI	GTAC	2 cut(s)	543, 570
RseI	CAYNNNNRTG	1 cut(s)	440
SalI	GTCGAC	2 cut(s)	164, 708
SaqAI	TTAA	1 cut(s)	348
SatI	GCNGC	6 cut(s)	31, 34, 318, 381, 830, 833
Sau3AI	GATC	5 cut(s)	16, 81, 86, 330, 583
Sau96I	GGNCC	5 cut(s)	151, 236, 417, 577, 741
ScaI	AGTACT	1 cut(s)	544
SchI	GAGTC	1 cut(s)	369
ScrFI	CCNGG	5 cut(s)	216, 416, 426, 676, 751
SfcI	CTRYAG	1 cut(s)	31
SinI	GGWCC	3 cut(s)	151, 577, 741
SmiMI	CAYNNNNRTG	1 cut(s)	440
SmlI	CTYRAG	1 cut(s)	347
SmoI	CTYRAG	1 cut(s)	347
Sse9I	AATT	5 cut(s)	20, 44, 224, 304, 429
SsiI	CCGC	4 cut(s)	403, 754, 789, 833
SspI	AATATT	1 cut(s)	399
SspMI	CTAG	2 cut(s)	233, 725
StyD4I	CCNGG	5 cut(s)	214, 414, 424, 674, 749
TaaI	ACNGT	3 cut(s)	68, 205, 285
TaqI	TCGA	5 cut(s)	89, 165, 263, 592, 709
TasI	AATT	5 cut(s)	20, 44, 224, 304, 429
TatI	WGTACW	1 cut(s)	542
TauI	GCSGC	1 cut(s)	835
TfiI	GAWTC	2 cut(s)	260, 409
Tru1I	TTAA	1 cut(s)	348
Tru9I	TTAA	1 cut(s)	348
TseFI	GTSAC	1 cut(s)	271
TseI	GCWGC	5 cut(s)	30, 33, 317, 380, 829
Tsp45I	GTSAC	1 cut(s)	271
TspDTI	ATGAA	2 cut(s)	512, 872
TspGWI	ACGGA	2 cut(s)	95, 587
Vha464I	CTTAAG	1 cut(s)	347
VpaK11BI	GGWCC	3 cut(s)	151, 577, 741
XagI	CCTNNNNNAGG	1 cut(s)	748
XapI	RAATTY	2 cut(s)	224, 429
XmiI	GTMKAC	2 cut(s)	165, 709
XspI	CTAG	2 cut(s)	233, 725
ZrmI	AGTACT	1 cut(s)	544

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.