Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000007

Orthogroup ID

OG0010552

Physical Location & Seq

Genomic Coordinates Forward (+)

1355429 .. 1356118

Gene Structure 690 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug07G0017100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 690 bp

ATGTCTGATCAAGATGCTAAGTTTCTAATTCTTGCTGGTCTGCCTTGGGAATATGGTCACACACGACAAATTATTAGAGGGAAACATGATATAACCATGGATGAAGTCAGGTCTTTATTACTCTTTGCTGAATTTGAGATTGAGTTGGGGCACAAGGCATTGCCTTTATCCTCTTTAACTGTTATGACTGCTCAAAATAGTATGTCATTACCACAAGAAATTCAATGGAATGGGTCTTGTGGTGTTGCTTCACCTTATAATTGCTCAGTGTCTACTGGGATAACTAGTCCAAATGCTCCCTCTATTGGATATCAACCTGTATTCAACACTAATGCAATGATGAATAATGGTATCTTGAGCAATGGTACTTATGTCTCTGAATGTGGATATATTGGATATCAATCTGCACCATACAGTAGTACCACACAGCAAAATGTTTATGGTTGTTTCTCTCAACCAACTGGTTTCATTGCTCAAAATGGCAGAGGAATCACTCAAAATAGTGGAAGTATGCAGGTTTCTTATGGTGGTGCAATATCACAGCTACACAATGGTTGTTCCCCTCAAAATTTTGTTTTCAGTCAGCAGCATTTTCAGTGGTTTTGTGAAAATGTGAACTCATGTTCTCTTAATGATCCATATTCAAATGCTATTGAAAACCCACCATTTGGTGATGGGCAATTCTTATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000209 GO:0000902 GO:0000904 GO:0003006 GO:0003674 GO:0003824 GO:0004842 GO:0006464 GO:0006508 GO:0006511 GO:0006807 GO:0007275 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009653 GO:0009791 GO:0009826 GO:0009888 GO:0009987 GO:0010026 GO:0010154 GO:0010498 GO:0016043 GO:0016049 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0019941 GO:0022412 GO:0022414 GO:0030154 GO:0030163 GO:0032446 GO:0032501 GO:0032502 GO:0032504 GO:0032989 GO:0036211 GO:0040007 GO:0043161 GO:0043170 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0048316 GO:0048468 GO:0048589 GO:0048608 GO:0048731 GO:0048856 GO:0048869 GO:0051603 GO:0060560 GO:0061458 GO:0061630 GO:0061659 GO:0070647 GO:0071704 GO:0071840 GO:0090376 GO:0090378 GO:0090558 GO:0140096 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-RING_2 zf-rbx1

Protein Analysis

229

Amino Acids

24.97

Weight (kDa)

4.86

Isoelectric Point (pI)

44.4

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010552)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g45030 FvH4_5g04570 FvH4_5g05561 FvH4_5g05590 FvH4_5g09840 FvH4_5g09840 FvH4_6g41381 FvH4_6g41383
rosa_chinensis	RchiOBHm_Chr5g0082881
rosa_multiflora	Rmu_co8151450.1_g000001 Rmu_sc0001381.1_g000010 Rmu_sc0023803.1_g000002
rosa_roxburghii	Rroxscaffold_1G00001560
rosa_rugosa	Rorug05G0480600 Rorug05G0480800 Rorug07G0017100
rosa_samantha	Rh1DG078100 Rh5AG531000 Rh5DG566300
rosa_wichuraiana	Rw5G049770 Rw7G012350

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	258, 688
Acc36I	ACCTGC	1 cut(s)	505
AccB7I	CCANNNNNTGG	1 cut(s)	668
AccI	GTMKAC	1 cut(s)	272
AclWI	GGATC	1 cut(s)	629
AcsI	RAATTY	3 cut(s)	131, 219, 568
AfaI	GTAC	2 cut(s)	367, 421
AfiI	CCNNNNNNNGG	2 cut(s)	305, 668
AgsI	TTSAA	4 cut(s)	224, 325, 645, 656
AhlI	ACTAGT	1 cut(s)	284
AluBI	AGCT	1 cut(s)	544
AluI	AGCT	1 cut(s)	544
Alw26I	GTCTC	1 cut(s)	379
AlwI	GGATC	1 cut(s)	629
ApeKI	GCWGC	1 cut(s)	586
ApoI	RAATTY	3 cut(s)	131, 219, 568
AsuHPI	GGTGA	2 cut(s)	243, 683
BaeGI	GKGCMC	1 cut(s)	153
BaeI	ACNNNNGTAYC	4 cut(s)	357, 390, 403, 436
BbvI	GCAGC	1 cut(s)	598
BccI	CCATC	1 cut(s)	668
BclI	TGATCA	1 cut(s)	7
BcoDI	GTCTC	1 cut(s)	379
BcuI	ACTAGT	1 cut(s)	284
BfaI	CTAG	1 cut(s)	285
BfuAI	ACCTGC	1 cut(s)	505
BisI	GCNGC	1 cut(s)	587
BlsI	GCNGC	1 cut(s)	588
BmrI	ACTGGG	1 cut(s)	285
BmsI	GCATC	1 cut(s)	4
BmuI	ACTGGG	1 cut(s)	285
BpuEI	CTTGAG	1 cut(s)	376
BsaBI	GATNNNNATC	1 cut(s)	400
BsaJI	CCNNGG	2 cut(s)	44, 96
Bsc4I	CCNNNNNNNGG	2 cut(s)	305, 668
Bse1I	ACTGG	2 cut(s)	280, 466
Bse3DI	GCAATG	4 cut(s)	158, 342, 367, 468
Bse8I	GATNNNNATC	1 cut(s)	400
BseDI	CCNNGG	2 cut(s)	44, 96
BseGI	GGATG	1 cut(s)	106
BseJI	GATNNNNATC	1 cut(s)	400
BseLI	CCNNNNNNNGG	2 cut(s)	305, 668
BseMI	GCAATG	4 cut(s)	158, 342, 367, 468
BseMII	CTCAG	1 cut(s)	279
BseNI	ACTGG	2 cut(s)	280, 466
BseSI	GKGCMC	1 cut(s)	153
BseXI	GCAGC	1 cut(s)	598
BsgI	GTGCAG	1 cut(s)	390
BslI	CCNNNNNNNGG	2 cut(s)	305, 668
BsmAI	GTCTC	1 cut(s)	379
Bsp1286I	GDGCHC	1 cut(s)	153
Bsp143I	GATC	2 cut(s)	7, 634
Bsp19I	CCATGG	1 cut(s)	96
BspCNI	CTCAG	1 cut(s)	278
BspMI	ACCTGC	1 cut(s)	505
BspPI	GGATC	1 cut(s)	629
BsrDI	GCAATG	4 cut(s)	158, 342, 367, 468
BsrI	ACTGG	2 cut(s)	280, 466
BssECI	CCNNGG	2 cut(s)	44, 96
BssMI	GATC	2 cut(s)	7, 634
BssT1I	CCWWGG	2 cut(s)	44, 96
Bst4CI	ACNGT	2 cut(s)	181, 416
BstDEI	CTNAG	2 cut(s)	18, 265
BstDSI	CCRYGG	1 cut(s)	96
BstF5I	GGATG	1 cut(s)	106
BstKTI	GATC	2 cut(s)	10, 637
BstMAI	GTCTC	1 cut(s)	379
BstMBI	GATC	2 cut(s)	7, 634
BstSLI	GKGCMC	1 cut(s)	153
BstV1I	GCAGC	1 cut(s)	598
BtgI	CCRYGG	1 cut(s)	96
BtsCI	GGATG	1 cut(s)	106
BtsIMutI	CAGTG	2 cut(s)	273, 602
BveI	ACCTGC	1 cut(s)	505
Csp6I	GTAC	2 cut(s)	366, 420
CviAII	CATG	3 cut(s)	86, 97, 621
CviJI	RGCY	1 cut(s)	544
CviKI_1	RGCY	1 cut(s)	544
CviQI	GTAC	2 cut(s)	366, 420
DdeI	CTNAG	2 cut(s)	18, 265
DpnI	GATC	2 cut(s)	9, 636
DpnII	GATC	2 cut(s)	7, 634
Eco130I	CCWWGG	2 cut(s)	44, 96
Eco32I	GATATC	2 cut(s)	311, 398
EcoRV	GATATC	2 cut(s)	311, 398
EcoT14I	CCWWGG	2 cut(s)	44, 96
ErhI	CCWWGG	2 cut(s)	44, 96
FaeI	CATG	3 cut(s)	89, 100, 624
FatI	CATG	3 cut(s)	85, 96, 620
FbaI	TGATCA	1 cut(s)	7
FblI	GTMKAC	1 cut(s)	272
Fnu4HI	GCNGC	1 cut(s)	587
FokI	GGATG	1 cut(s)	113
Fsp4HI	GCNGC	1 cut(s)	587
FspBI	CTAG	1 cut(s)	285
GluI	GCNGC	1 cut(s)	587
Hin1II	CATG	3 cut(s)	89, 100, 624
HinfI	GANTC	1 cut(s)	489
HphI	GGTGA	2 cut(s)	243, 683
Hpy166II	GTNNAC	2 cut(s)	273, 616
Hpy188I	TCNGA	2 cut(s)	7, 379
Hpy188III	TCNNGA	2 cut(s)	11, 355
Hpy8I	GTNNAC	2 cut(s)	273, 616
HpyCH4III	ACNGT	2 cut(s)	181, 416
HpyCH4V	TGCA	4 cut(s)	335, 407, 514, 533
HpyF3I	CTNAG	2 cut(s)	18, 265
Hsp92II	CATG	3 cut(s)	89, 100, 624
Ksp22I	TGATCA	1 cut(s)	7
Kzo9I	GATC	2 cut(s)	7, 634
LmnI	GCTCC	1 cut(s)	301
LpnPI	CCDG	6 cut(s)	21, 94, 261, 330, 447, 500
Lsp1109I	GCAGC	1 cut(s)	598
LweI	GCATC	1 cut(s)	4
MaeI	CTAG	1 cut(s)	285
MaeIII	GTNAC	1 cut(s)	56
MalI	GATC	2 cut(s)	9, 636
MboI	GATC	2 cut(s)	7, 634
MhlI	GDGCHC	1 cut(s)	153
MluCI	AATT	7 cut(s)	27, 69, 131, 219, 259, 568, 680
MnlI	CCTC	5 cut(s)	71, 181, 310, 479, 573
MseI	TTAA	2 cut(s)	176, 630
NcoI	CCATGG	1 cut(s)	96
NdeII	GATC	2 cut(s)	7, 634
NlaIII	CATG	3 cut(s)	89, 100, 624
NmuCI	GTSAC	1 cut(s)	56
PfeI	GAWTC	1 cut(s)	489
PflMI	CCANNNNNTGG	1 cut(s)	668
PkrI	GCNGC	1 cut(s)	588
PsiI	TTATAA	2 cut(s)	258, 688
RsaI	GTAC	2 cut(s)	367, 421
RsaNI	GTAC	2 cut(s)	366, 420
SaqAI	TTAA	2 cut(s)	176, 630
SatI	GCNGC	1 cut(s)	587
Sau3AI	GATC	2 cut(s)	7, 634
SduI	GDGCHC	1 cut(s)	153
SetI	ASST	5 cut(s)	113, 256, 319, 519, 546
SfaNI	GCATC	1 cut(s)	4
SmlI	CTYRAG	1 cut(s)	355
SmoI	CTYRAG	1 cut(s)	355
SpeI	ACTAGT	1 cut(s)	284
Sse9I	AATT	7 cut(s)	27, 69, 131, 219, 259, 568, 680
SspMI	CTAG	1 cut(s)	285
StyI	CCWWGG	2 cut(s)	44, 96
TaaI	ACNGT	2 cut(s)	181, 416
TasI	AATT	7 cut(s)	27, 69, 131, 219, 259, 568, 680
TfiI	GAWTC	1 cut(s)	489
Tru1I	TTAA	2 cut(s)	176, 630
Tru9I	TTAA	2 cut(s)	176, 630
TscAI	CASTG	2 cut(s)	273, 602
TseFI	GTSAC	1 cut(s)	56
TseI	GCWGC	1 cut(s)	586
Tsp45I	GTSAC	1 cut(s)	56
TspDTI	ATGAA	3 cut(s)	117, 356, 457
TspRI	CASTG	2 cut(s)	273, 602
Van91I	CCANNNNNTGG	1 cut(s)	668
XapI	RAATTY	3 cut(s)	131, 219, 568
XmiI	GTMKAC	1 cut(s)	272
XspI	CTAG	1 cut(s)	285

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.