Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb5

Orthogroup ID

OG0010552

Physical Location & Seq

Genomic Coordinates Forward (+)

2697609 .. 2698661

Gene Structure 1053 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_5g04570.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 648 bp

ATGGATGTCCCTGAACGTGCTCAATCACCTATTATTGAAGAAATATTTAAGGTGGTTGATGTGGCCGTCCCCAAGTTGCCTGTTGTGGTTGCTATTGTGGACATCACCGATGTGGACAGCGGCGGAATTTTTCCTGCAACTAAACCAGCCATTCGAAGTTTGGAGAAAGTGAGACTTGATAGTTTGGATGAAGCTACTATTACACGGACGCCTTCATGTGTTATTTGCTTGAAGGACCTGGATCGCCAACATATGATTACTCGATTGCCTTGCTCGCACGCATATCACGCGGATTGCGTTATTACTTGGCTGGAGACGAGTCACTACTGCCCAGTGTGCCGATATTCAATGCCGTTTATCCCAGAGTGCCAACTTTCAACTCTATCCGGAGGCAAAGGTGAAAACCTTTCAATATCGATATCCGAGGGTGTTGTGAATCTAGCCGTACCTTTCCTACTGGGCTTAGGGATAAGCCCCCTATCAGACAAGTACAAGTACTCGATTTATGTATTGAGGGCTGAAGCTCAGGCCAAGGTGCAAACTCTTCAATGTCCGAGGGCTCAGGATCAGGCCAAGGTGCAAATCCTTCAACATCTGAGTGTCTCAGGATCAGGCCAAGGTGCAAACCCTTCAAAATCCAAGGGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000209 GO:0000902 GO:0000904 GO:0003006 GO:0003674 GO:0003824 GO:0004842 GO:0006464 GO:0006508 GO:0006511 GO:0006807 GO:0007275 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009653 GO:0009791 GO:0009826 GO:0009888 GO:0009987 GO:0010026 GO:0010154 GO:0010498 GO:0016043 GO:0016049 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0019941 GO:0022412 GO:0022414 GO:0030154 GO:0030163 GO:0032446 GO:0032501 GO:0032502 GO:0032504 GO:0032989 GO:0036211 GO:0040007 GO:0043161 GO:0043170 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0048316 GO:0048468 GO:0048589 GO:0048608 GO:0048731 GO:0048856 GO:0048869 GO:0051603 GO:0060560 GO:0061458 GO:0061630 GO:0061659 GO:0070647 GO:0071704 GO:0071840 GO:0090376 GO:0090378 GO:0090558 GO:0140096 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-RING_2 zf-rbx1

Protein Analysis

216

Amino Acids

23.36

Weight (kDa)

6.51

Isoelectric Point (pI)

45.48

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-RING_2	PF13639	72 - 114	1.7e-13	Ring finger domain
zf-rbx1	PF12678	72 - 114	7.4e-08	RING-H2 zinc finger domain
zf-RING_11	PF17123	73 - 100	3.8e-08	RING-like zinc finger
zf-C3HC4_2	PF13923	73 - 113	2.4e-07	Zinc finger, C3HC4 type (RING finger)
zf-C3HC4	PF00097	73 - 113	4.6e-06	Zinc finger, C3HC4 type (RING finger)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010552)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g45030 FvH4_5g04570 FvH4_5g05561 FvH4_5g05590 FvH4_5g09840 FvH4_5g09840 FvH4_6g41381 FvH4_6g41383
rosa_chinensis	RchiOBHm_Chr5g0082881
rosa_multiflora	Rmu_co8151450.1_g000001 Rmu_sc0001381.1_g000010 Rmu_sc0023803.1_g000002
rosa_roxburghii	Rroxscaffold_1G00001560
rosa_rugosa	Rorug05G0480600 Rorug05G0480800 Rorug07G0017100
rosa_samantha	Rh1DG078100 Rh5AG531000 Rh5DG566300
rosa_wichuraiana	Rw5G049770 Rw7G012350

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	290
AccIII	TCCGGA	1 cut(s)	386
AciI	CCGC	3 cut(s)	120, 123, 290
AclWI	GGATC	3 cut(s)	249, 573, 616
AcoI	YGGCCR	1 cut(s)	63
AcsI	RAATTY	1 cut(s)	126
AcuI	CTGAAG	1 cut(s)	540
AcyI	GRCGYC	1 cut(s)	209
AfaI	GTAC	3 cut(s)	447, 491, 497
AgsI	TTSAA	8 cut(s)	38, 232, 348, 378, 411, 548, 590, 633
AjnI	CCWGG	1 cut(s)	237
AleI	CACNNNNGTG	1 cut(s)	110
AluBI	AGCT	2 cut(s)	194, 524
AluI	AGCT	2 cut(s)	194, 524
Alw21I	GWGCWC	1 cut(s)	22
Alw26I	GTCTC	3 cut(s)	166, 308, 607
AlwI	GGATC	3 cut(s)	249, 573, 616
Aor13HI	TCCGGA	1 cut(s)	386
AoxI	GGCC	4 cut(s)	63, 528, 570, 613
ApoI	RAATTY	1 cut(s)	126
AspS9I	GGNCC	1 cut(s)	235
AsuHPI	GGTGA	3 cut(s)	18, 97, 410
AsuII	TTCGAA	1 cut(s)	154
AvaII	GGWCC	1 cut(s)	235
BanII	GRGCYC	1 cut(s)	562
Bbv12I	GWGCWC	1 cut(s)	22
BceAI	ACGGC	3 cut(s)	50, 337, 428
BcgI	CGANNNNNNTGC	2 cut(s)	252, 286
BciT130I	CCWGG	1 cut(s)	239
BcoDI	GTCTC	3 cut(s)	166, 308, 607
BfaI	CTAG	1 cut(s)	440
BisI	GCNGC	1 cut(s)	121
BlsI	GCNGC	1 cut(s)	122
BmcAI	AGTACT	1 cut(s)	497
Bme1390I	CCNGG	1 cut(s)	239
Bme18I	GGWCC	1 cut(s)	235
BmgT120I	GGNCC	1 cut(s)	235
BmrFI	CCNGG	1 cut(s)	239
BmrI	ACTGGG	2 cut(s)	326, 467
BmuI	ACTGGG	2 cut(s)	326, 467
BpmI	CTGGAG	1 cut(s)	332
Bpu10I	CCTNAGC	3 cut(s)	463, 525, 561
Bpu14I	TTCGAA	1 cut(s)	154
Bsa29I	ATCGAT	1 cut(s)	416
BsaHI	GRCGYC	1 cut(s)	209
BsaJI	CCNNGG	6 cut(s)	423, 531, 554, 573, 616, 639
BsaWI	WCCGGW	1 cut(s)	386
Bse1I	ACTGG	2 cut(s)	332, 462
BseAI	TCCGGA	1 cut(s)	386
BseBI	CCWGG	1 cut(s)	239
BseCI	ATCGAT	1 cut(s)	416
BseDI	CCNNGG	6 cut(s)	423, 531, 554, 573, 616, 639
BseGI	GGATG	2 cut(s)	10, 193
BseMII	CTCAG	4 cut(s)	539, 575, 587, 618
BseNI	ACTGG	2 cut(s)	332, 462
Bsh1236I	CGCG	1 cut(s)	290
BshFI	GGCC	4 cut(s)	65, 530, 572, 615
BshVI	ATCGAT	1 cut(s)	416
BsiHKAI	GWGCWC	1 cut(s)	22
BsiSI	CCGG	1 cut(s)	387
BslFI	GGGAC	1 cut(s)	53
BsmAI	GTCTC	3 cut(s)	166, 308, 607
BsmBI	CGTCTC	1 cut(s)	308
BsmFI	GGGAC	1 cut(s)	53
BsnI	GGCC	4 cut(s)	65, 530, 572, 615
Bsp119I	TTCGAA	1 cut(s)	154
Bsp1286I	GDGCHC	2 cut(s)	22, 562
Bsp13I	TCCGGA	1 cut(s)	386
Bsp143I	GATC	3 cut(s)	241, 565, 608
BspACI	CCGC	3 cut(s)	120, 123, 290
BspANI	GGCC	4 cut(s)	65, 530, 572, 615
BspCNI	CTCAG	4 cut(s)	538, 574, 588, 617
BspDI	ATCGAT	1 cut(s)	416
BspEI	TCCGGA	1 cut(s)	386
BspFNI	CGCG	1 cut(s)	290
BspPI	GGATC	3 cut(s)	249, 573, 616
BspT104I	TTCGAA	1 cut(s)	154
BsrI	ACTGG	2 cut(s)	332, 462
BssECI	CCNNGG	6 cut(s)	423, 531, 554, 573, 616, 639
BssMI	GATC	3 cut(s)	241, 565, 608
BssNI	GRCGYC	1 cut(s)	209
BssT1I	CCWWGG	4 cut(s)	531, 573, 616, 639
Bst2UI	CCWGG	1 cut(s)	239
Bst6I	CTCTTC	1 cut(s)	549
BstACI	GRCGYC	1 cut(s)	209
BstBI	TTCGAA	1 cut(s)	154
BstC8I	GCNNGC	2 cut(s)	275, 279
BstDEI	CTNAG	5 cut(s)	463, 525, 561, 596, 604
BstF5I	GGATG	2 cut(s)	10, 193
BstFNI	CGCG	1 cut(s)	290
BstKTI	GATC	3 cut(s)	244, 568, 611
BstMAI	GTCTC	3 cut(s)	166, 308, 607
BstMBI	GATC	3 cut(s)	241, 565, 608
BstMWI	GCNNNNNNNGC	3 cut(s)	274, 287, 336
BstNI	CCWGG	1 cut(s)	239
BstSCI	CCNGG	1 cut(s)	237
BstUI	CGCG	1 cut(s)	290
Bsu15I	ATCGAT	1 cut(s)	416
BsuRI	GGCC	4 cut(s)	65, 530, 572, 615
BsuTUI	ATCGAT	1 cut(s)	416
BtsCI	GGATG	2 cut(s)	10, 193
BtsIMutI	CAGTG	1 cut(s)	339
Cac8I	GCNNGC	2 cut(s)	275, 279
Cfr13I	GGNCC	1 cut(s)	235
ClaI	ATCGAT	1 cut(s)	416
CseI	GACGC	1 cut(s)	217
Csp6I	GTAC	3 cut(s)	446, 490, 496
CviAII	CATG	1 cut(s)	216
CviQI	GTAC	3 cut(s)	446, 490, 496
DdeI	CTNAG	5 cut(s)	463, 525, 561, 596, 604
DpnI	GATC	3 cut(s)	243, 567, 610
DpnII	GATC	3 cut(s)	241, 565, 608
EaeI	YGGCCR	1 cut(s)	63
Eam1104I	CTCTTC	1 cut(s)	549
EarI	CTCTTC	1 cut(s)	549
EciI	GGCGGA	1 cut(s)	138
Eco130I	CCWWGG	4 cut(s)	531, 573, 616, 639
Eco24I	GRGCYC	1 cut(s)	562
Eco32I	GATATC	1 cut(s)	420
Eco47I	GGWCC	1 cut(s)	235
Eco57I	CTGAAG	1 cut(s)	540
EcoO109I	RGGNCCY	1 cut(s)	235
EcoRII	CCWGG	1 cut(s)	237
EcoRV	GATATC	1 cut(s)	420
EcoT14I	CCWWGG	4 cut(s)	531, 573, 616, 639
EcoT38I	GRGCYC	1 cut(s)	562
ErhI	CCWWGG	4 cut(s)	531, 573, 616, 639
Esp3I	CGTCTC	1 cut(s)	308
FaeI	CATG	1 cut(s)	219
FaiI	YATR	5 cut(s)	217, 252, 254, 283, 507
FalI	AAGNNNNNCTT	2 cut(s)	159, 191
FaqI	GGGAC	1 cut(s)	53
FatI	CATG	1 cut(s)	215
FauNDI	CATATG	1 cut(s)	252
Fnu4HI	GCNGC	1 cut(s)	121
FokI	GGATG	2 cut(s)	17, 200
FriOI	GRGCYC	1 cut(s)	562
Fsp4HI	GCNGC	1 cut(s)	121
FspBI	CTAG	1 cut(s)	440
GluI	GCNGC	1 cut(s)	121
GsuI	CTGGAG	1 cut(s)	332
HaeIII	GGCC	4 cut(s)	65, 530, 572, 615
HapII	CCGG	1 cut(s)	387
HgaI	GACGC	1 cut(s)	217
Hin1I	GRCGYC	1 cut(s)	209
Hin1II	CATG	1 cut(s)	219
HinfI	GANTC	2 cut(s)	319, 436
HpaII	CCGG	1 cut(s)	387
HphI	GGTGA	3 cut(s)	18, 97, 410
Hpy166II	GTNNAC	2 cut(s)	100, 115
Hpy188I	TCNGA	4 cut(s)	424, 484, 555, 597
Hpy188III	TCNNGA	3 cut(s)	387, 563, 606
Hpy8I	GTNNAC	2 cut(s)	100, 115
HpyAV	CCTTC	4 cut(s)	222, 226, 596, 639
HpyCH4IV	ACGT	1 cut(s)	16
HpyCH4V	TGCA	4 cut(s)	137, 538, 580, 623
HpyF10VI	GCNNNNNNNGC	3 cut(s)	274, 287, 336
HpyF3I	CTNAG	5 cut(s)	463, 525, 561, 596, 604
HpySE526I	ACGT	1 cut(s)	16
Hsp92I	GRCGYC	1 cut(s)	209
Hsp92II	CATG	1 cut(s)	219
Kpn2I	TCCGGA	1 cut(s)	386
Kzo9I	GATC	3 cut(s)	241, 565, 608
MaeI	CTAG	1 cut(s)	440
MaeII	ACGT	1 cut(s)	16
MaeIII	GTNAC	1 cut(s)	320
MalI	GATC	3 cut(s)	243, 567, 610
MboI	GATC	3 cut(s)	241, 565, 608
MboII	GAAGA	2 cut(s)	50, 536
MhlI	GDGCHC	2 cut(s)	22, 562
MluCI	AATT	1 cut(s)	126
MlyI	GAGTC	1 cut(s)	328
MnlI	CCTC	4 cut(s)	383, 418, 507, 549
MroI	TCCGGA	1 cut(s)	386
MseI	TTAA	1 cut(s)	48
MslI	CAYNNNNRTG	2 cut(s)	110, 597
MspA1I	CMGCKG	1 cut(s)	120
MspI	CCGG	1 cut(s)	387
MspR9I	CCNGG	1 cut(s)	239
MvaI	CCWGG	1 cut(s)	239
MvnI	CGCG	1 cut(s)	290
MwoI	GCNNNNNNNGC	3 cut(s)	274, 287, 336
NdeI	CATATG	1 cut(s)	252
NdeII	GATC	3 cut(s)	241, 565, 608
NlaIII	CATG	1 cut(s)	219
NmuCI	GTSAC	1 cut(s)	320
NspV	TTCGAA	1 cut(s)	154
OliI	CACNNNNGTG	1 cut(s)	110
PcsI	WCGNNNNNNNCGW	1 cut(s)	294
PfeI	GAWTC	1 cut(s)	436
PkrI	GCNGC	1 cut(s)	122
PleI	GAGTC	1 cut(s)	327
PpsI	GAGTC	1 cut(s)	327
PpuMI	RGGWCCY	1 cut(s)	235
Psp5II	RGGWCCY	1 cut(s)	235
Psp6I	CCWGG	1 cut(s)	237
PspGI	CCWGG	1 cut(s)	237
PspPI	GGNCC	1 cut(s)	235
PspPPI	RGGWCCY	1 cut(s)	235
RsaI	GTAC	3 cut(s)	447, 491, 497
RsaNI	GTAC	3 cut(s)	446, 490, 496
RseI	CAYNNNNRTG	2 cut(s)	110, 597
SaqAI	TTAA	1 cut(s)	48
SatI	GCNGC	1 cut(s)	121
Sau3AI	GATC	3 cut(s)	241, 565, 608
Sau96I	GGNCC	1 cut(s)	235
ScaI	AGTACT	1 cut(s)	497
SchI	GAGTC	1 cut(s)	328
ScrFI	CCNGG	1 cut(s)	239
SduI	GDGCHC	2 cut(s)	22, 562
SfuI	TTCGAA	1 cut(s)	154
SinI	GGWCC	1 cut(s)	235
SmiMI	CAYNNNNRTG	2 cut(s)	110, 597
Sse9I	AATT	1 cut(s)	126
SsiI	CCGC	3 cut(s)	120, 123, 290
SspI	AATATT	1 cut(s)	45
SspMI	CTAG	1 cut(s)	440
StyD4I	CCNGG	1 cut(s)	237
StyI	CCWWGG	4 cut(s)	531, 573, 616, 639
TaiI	ACGT	1 cut(s)	19
TaqI	TCGA	4 cut(s)	154, 262, 416, 500
TasI	AATT	1 cut(s)	126
TatI	WGTACW	2 cut(s)	489, 495
TauI	GCSGC	1 cut(s)	123
TfiI	GAWTC	1 cut(s)	436
Tru1I	TTAA	1 cut(s)	48
Tru9I	TTAA	1 cut(s)	48
TscAI	CASTG	1 cut(s)	339
TseFI	GTSAC	1 cut(s)	320
Tsp45I	GTSAC	1 cut(s)	320
TspDTI	ATGAA	2 cut(s)	204, 204
TspGWI	ACGGA	1 cut(s)	220
TspRI	CASTG	1 cut(s)	339
VpaK11BI	GGWCC	1 cut(s)	235
XapI	RAATTY	1 cut(s)	126
XcmI	CCANNNNNNNNNTGG	1 cut(s)	157
XspI	CTAG	1 cut(s)	440
ZrmI	AGTACT	1 cut(s)	497

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.