Rh1DG078100

No description available

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1D
Physical Location & Seq
Forward (+)
14390220 .. 14390528
309 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1DG078100.1

Sequence Viewer

Length: 276 bp
ATGTCTTTCAAGTTTCGCCACTTGACCCCTTTCCAGATTTGTCAACTATGTTTGAAGTCCGCATCATCACAAAGTTCATGTTTTGAAAGACCAACAGTAGAAACCCTCCCCAGCTTGACTACTTTGGACGGAGAGGATTGGCTTCCGATCAAATTAGACCTCTTCACCTTAACCGGGAGGCGTCGTTGGATTTATGCAGTTCCAGATTCAGATTCTATTTATGAAGAAGCAAACCTTGTAACCCAAAGACGAATGTTAATTAGTCCCTCTCGATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

91

Amino Acids

10.54

Weight (kDa)

7.73

Isoelectric Point (pI)

84.08

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 60
AcyI GRCGYC 1 cut(s) 181
AfiI CCNNNNNNNGG 1 cut(s) 174
AgsI TTSAA 3 cut(s) 10, 55, 86
AluBI AGCT 1 cut(s) 114
AluI AGCT 1 cut(s) 114
AsuC2I CCSGG 1 cut(s) 175
AsuHPI GGTGA 1 cut(s) 157
BcnI CCSGG 1 cut(s) 175
Bme1390I CCNGG 1 cut(s) 175
BmrFI CCNGG 1 cut(s) 175
BmsI GCATC 1 cut(s) 71
BpuMI CCSGG 1 cut(s) 175
BsaHI GRCGYC 1 cut(s) 181
BsaXI ACNNNNNCTCC 2 cut(s) 169, 199
Bsc4I CCNNNNNNNGG 1 cut(s) 174
BseLI CCNNNNNNNGG 1 cut(s) 174
BseYI CCCAGC 1 cut(s) 110
BsiSI CCGG 1 cut(s) 174
BslFI GGGAC 1 cut(s) 249
BslI CCNNNNNNNGG 1 cut(s) 174
BsmFI GGGAC 1 cut(s) 249
Bsp143I GATC 1 cut(s) 147
BspACI CCGC 1 cut(s) 60
BssMI GATC 1 cut(s) 147
BssNI GRCGYC 1 cut(s) 181
Bst4CI ACNGT 1 cut(s) 97
Bst6I CTCTTC 1 cut(s) 167
BstACI GRCGYC 1 cut(s) 181
BstKTI GATC 1 cut(s) 150
BstMBI GATC 1 cut(s) 147
BstSCI CCNGG 1 cut(s) 173
CseI GACGC 1 cut(s) 170
CviAII CATG 1 cut(s) 78
CviJI RGCY 2 cut(s) 114, 142
CviKI_1 RGCY 2 cut(s) 114, 142
DpnI GATC 1 cut(s) 149
DpnII GATC 1 cut(s) 147
Eam1104I CTCTTC 1 cut(s) 167
EarI CTCTTC 1 cut(s) 167
FaeI CATG 1 cut(s) 81
FaiI YATR 4 cut(s) 49, 79, 195, 222
FalI AAGNNNNNCTT 2 cut(s) 219, 251
FaqI GGGAC 1 cut(s) 249
FatI CATG 1 cut(s) 77
GsaI CCCAGC 1 cut(s) 114
HapII CCGG 1 cut(s) 174
HgaI GACGC 1 cut(s) 170
Hin1I GRCGYC 1 cut(s) 181
Hin1II CATG 1 cut(s) 81
HincII GTYRAC 1 cut(s) 44
HindII GTYRAC 1 cut(s) 44
HinfI GANTC 2 cut(s) 206, 212
HpaII CCGG 1 cut(s) 174
HphI GGTGA 1 cut(s) 157
Hpy166II GTNNAC 1 cut(s) 44
Hpy188I TCNGA 2 cut(s) 147, 211
Hpy188III TCNNGA 3 cut(s) 34, 203, 270
Hpy8I GTNNAC 1 cut(s) 44
Hpy99I CGWCG 1 cut(s) 186
HpyCH4III ACNGT 1 cut(s) 97
HpyCH4V TGCA 1 cut(s) 197
Hsp92I GRCGYC 1 cut(s) 181
Hsp92II CATG 1 cut(s) 81
Kzo9I GATC 1 cut(s) 147
LpnPI CCDG 4 cut(s) 47, 124, 187, 216
LweI GCATC 1 cut(s) 71
MaeIII GTNAC 1 cut(s) 238
MalI GATC 1 cut(s) 149
MboI GATC 1 cut(s) 147
MboII GAAGA 2 cut(s) 154, 236
MluCI AATT 2 cut(s) 152, 258
MmeI TCCRAC 1 cut(s) 167
MnlI CCTC 4 cut(s) 116, 127, 170, 171
MseI TTAA 2 cut(s) 170, 257
MspI CCGG 1 cut(s) 174
MspR9I CCNGG 1 cut(s) 175
NciI CCSGG 1 cut(s) 175
NdeII GATC 1 cut(s) 147
NlaIII CATG 1 cut(s) 81
PfeI GAWTC 2 cut(s) 206, 212
PspFI CCCAGC 1 cut(s) 110
SaqAI TTAA 2 cut(s) 170, 257
Sau3AI GATC 1 cut(s) 147
ScrFI CCNGG 1 cut(s) 175
SetI ASST 4 cut(s) 116, 162, 170, 237
SfaNI GCATC 1 cut(s) 71
Sse9I AATT 2 cut(s) 152, 258
SsiI CCGC 1 cut(s) 60
StyD4I CCNGG 1 cut(s) 173
TaaI ACNGT 1 cut(s) 97
TaqI TCGA 1 cut(s) 271
TasI AATT 2 cut(s) 152, 258
TfiI GAWTC 2 cut(s) 206, 212
Tru1I TTAA 2 cut(s) 170, 257
Tru9I TTAA 2 cut(s) 170, 257
TspDTI ATGAA 2 cut(s) 66, 237
TspGWI ACGGA 1 cut(s) 144
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.