Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb5

Orthogroup ID

OG0010552

Physical Location & Seq

Genomic Coordinates Forward (+)

3270867 .. 3271964

Gene Structure 1098 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_5g05561.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 453 bp

ATGGACCTGCGTACCATTCTTTCGATGATTGGTGTCACAGAAGCTCGACAGCAGGGTGTTGTATACCAAATATTGAAGGTGCTTCAAGTATCCCTGCCCGTGCTGCCTATTGATGTAAGGATATTGGAGCAGATTTATAATATATACGTACCGCGAGTTTCACCGGCGGCTAGGCTGGAGCCGGACGTCAAACCGGCGACGGAATCATCGATTGAGAGTCTGGAGAAAGTTAGGCTTGATAGTTTGGAAGAGCCAGAGTCACCGTGTACTATTTGTTCCGACGACCTCACATATCCACTCGTTGCTCCTGTCTTAGAGAGCCAACAGGCAGGTCAGCTTCTACCTCTTCTCCGGGAGGCTGGTGCGGTTGTTAATAACCCCCCGTATCTGCGTGAAGCAGAGTTGAAACTAAGCAACCTGCATATATTCCTGGATCAAGGTTGGTCTAGTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-RING_2 zf-rbx1

Protein Analysis

151

Amino Acids

16.68

Weight (kDa)

4.6

Isoelectric Point (pI)

67.63

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010552)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g45030 FvH4_5g04570 FvH4_5g05561 FvH4_5g05590 FvH4_5g09840 FvH4_5g09840 FvH4_6g41381 FvH4_6g41383
rosa_chinensis	RchiOBHm_Chr5g0082881
rosa_multiflora	Rmu_co8151450.1_g000001 Rmu_sc0001381.1_g000010 Rmu_sc0023803.1_g000002
rosa_roxburghii	Rroxscaffold_1G00001560
rosa_rugosa	Rorug05G0480600 Rorug05G0480800 Rorug07G0017100
rosa_samantha	Rh1DG078100 Rh5AG531000 Rh5DG566300
rosa_wichuraiana	Rw5G049770 Rw7G012350

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	138
AatII	GACGTC	1 cut(s)	189
Acc36I	ACCTGC	3 cut(s)	15, 320, 426
AccI	GTMKAC	1 cut(s)	63
AccII	CGCG	1 cut(s)	154
AciI	CCGC	3 cut(s)	152, 167, 365
AclWI	GGATC	1 cut(s)	441
AcyI	GRCGYC	1 cut(s)	186
AfaI	GTAC	3 cut(s)	13, 150, 268
AgsI	TTSAA	3 cut(s)	76, 86, 406
AjnI	CCWGG	1 cut(s)	429
AluBI	AGCT	2 cut(s)	44, 337
AluI	AGCT	2 cut(s)	44, 337
AlwI	GGATC	1 cut(s)	441
ApeKI	GCWGC	1 cut(s)	103
AspS9I	GGNCC	1 cut(s)	4
AsuC2I	CCSGG	1 cut(s)	353
AsuHPI	GGTGA	2 cut(s)	153, 252
AvaII	GGWCC	1 cut(s)	4
BaeI	ACNNNNGTAYC	1 cut(s)	28
BbvI	GCAGC	1 cut(s)	90
BciT130I	CCWGG	1 cut(s)	431
BciVI	GTATCC	1 cut(s)	100
BcnI	CCSGG	1 cut(s)	353
BfaI	CTAG	2 cut(s)	171, 447
BfuAI	ACCTGC	3 cut(s)	15, 320, 426
BfuI	GTATCC	1 cut(s)	100
BisI	GCNGC	2 cut(s)	104, 168
BlsI	GCNGC	2 cut(s)	105, 169
Bme1390I	CCNGG	2 cut(s)	353, 431
Bme18I	GGWCC	1 cut(s)	4
BmgT120I	GGNCC	1 cut(s)	4
BmiI	GGNNCC	1 cut(s)	180
BmrFI	CCNGG	2 cut(s)	353, 431
BpmI	CTGGAG	2 cut(s)	197, 242
BpuMI	CCSGG	1 cut(s)	353
Bsa29I	ATCGAT	1 cut(s)	209
BsaAI	YACGTR	1 cut(s)	148
BsaHI	GRCGYC	1 cut(s)	186
BsaXI	ACNNNNNCTCC	2 cut(s)	333, 363
Bse118I	RCCGGY	2 cut(s)	163, 193
BseBI	CCWGG	1 cut(s)	431
BseCI	ATCGAT	1 cut(s)	209
BseXI	GCAGC	1 cut(s)	90
Bsh1236I	CGCG	1 cut(s)	154
BshVI	ATCGAT	1 cut(s)	209
BsiSI	CCGG	4 cut(s)	164, 182, 194, 352
Bsp143I	GATC	1 cut(s)	433
BspACI	CCGC	3 cut(s)	152, 167, 365
BspDI	ATCGAT	1 cut(s)	209
BspFNI	CGCG	1 cut(s)	154
BspLI	GGNNCC	1 cut(s)	180
BspMI	ACCTGC	3 cut(s)	15, 320, 426
BspPI	GGATC	1 cut(s)	441
BspQI	GCTCTTC	1 cut(s)	243
BsrFI	RCCGGY	2 cut(s)	163, 193
BssAI	RCCGGY	2 cut(s)	163, 193
BssMI	GATC	1 cut(s)	433
BssNAI	GTATAC	1 cut(s)	64
BssNI	GRCGYC	1 cut(s)	186
Bst1107I	GTATAC	1 cut(s)	64
Bst2UI	CCWGG	1 cut(s)	431
Bst4CI	ACNGT	1 cut(s)	264
Bst6I	CTCTTC	2 cut(s)	243, 351
BstACI	GRCGYC	1 cut(s)	186
BstBAI	YACGTR	1 cut(s)	148
BstDEI	CTNAG	2 cut(s)	313, 410
BstFNI	CGCG	1 cut(s)	154
BstKTI	GATC	1 cut(s)	436
BstMBI	GATC	1 cut(s)	433
BstMWI	GCNNNNNNNGC	1 cut(s)	103
BstNI	CCWGG	1 cut(s)	431
BstSCI	CCNGG	2 cut(s)	351, 429
BstSNI	TACGTA	1 cut(s)	148
BstUI	CGCG	1 cut(s)	154
BstV1I	GCAGC	1 cut(s)	90
BstZ17I	GTATAC	1 cut(s)	64
Bsu15I	ATCGAT	1 cut(s)	209
BsuI	GTATCC	1 cut(s)	100
BsuTUI	ATCGAT	1 cut(s)	209
BveI	ACCTGC	3 cut(s)	15, 320, 426
Cfr10I	RCCGGY	2 cut(s)	163, 193
Cfr13I	GGNCC	1 cut(s)	4
ClaI	ATCGAT	1 cut(s)	209
Csp6I	GTAC	3 cut(s)	12, 149, 267
CviJI	RGCY	9 cut(s)	44, 170, 175, 181, 235, 253, 321, 337, 359
CviKI_1	RGCY	9 cut(s)	44, 170, 175, 181, 235, 253, 321, 337, 359
CviQI	GTAC	3 cut(s)	12, 149, 267
DdeI	CTNAG	2 cut(s)	313, 410
DpnI	GATC	1 cut(s)	435
DpnII	GATC	1 cut(s)	433
Eam1104I	CTCTTC	2 cut(s)	243, 351
EarI	CTCTTC	2 cut(s)	243, 351
Eco105I	TACGTA	1 cut(s)	148
Eco47I	GGWCC	1 cut(s)	4
EcoRII	CCWGG	1 cut(s)	429
FaiI	YATR	7 cut(s)	64, 138, 143, 145, 292, 423, 425
FalI	AAGNNNNNCTT	2 cut(s)	219, 251
FblI	GTMKAC	1 cut(s)	63
Fnu4HI	GCNGC	2 cut(s)	104, 168
Fsp4HI	GCNGC	2 cut(s)	104, 168
FspBI	CTAG	2 cut(s)	171, 447
GluI	GCNGC	2 cut(s)	104, 168
GsuI	CTGGAG	2 cut(s)	197, 242
HapII	CCGG	4 cut(s)	164, 182, 194, 352
Hin1I	GRCGYC	1 cut(s)	186
HinfI	GANTC	3 cut(s)	203, 217, 257
HpaII	CCGG	4 cut(s)	164, 182, 194, 352
HphI	GGTGA	2 cut(s)	153, 252
Hpy166II	GTNNAC	2 cut(s)	64, 267
Hpy188I	TCNGA	1 cut(s)	280
Hpy188III	TCNNGA	1 cut(s)	221
Hpy8I	GTNNAC	2 cut(s)	64, 267
Hpy99I	CGWCG	2 cut(s)	202, 284
HpyAV	CCTTC	1 cut(s)	70
HpyCH4III	ACNGT	1 cut(s)	264
HpyCH4IV	ACGT	2 cut(s)	147, 186
HpyCH4V	TGCA	1 cut(s)	421
HpyF10VI	GCNNNNNNNGC	1 cut(s)	103
HpyF3I	CTNAG	2 cut(s)	313, 410
HpySE526I	ACGT	2 cut(s)	147, 186
Hsp92I	GRCGYC	1 cut(s)	186
Kzo9I	GATC	1 cut(s)	433
LguI	GCTCTTC	1 cut(s)	243
LmnI	GCTCC	3 cut(s)	127, 178, 310
Lsp1109I	GCAGC	1 cut(s)	90
MaeI	CTAG	2 cut(s)	171, 447
MaeII	ACGT	2 cut(s)	147, 186
MaeIII	GTNAC	2 cut(s)	34, 258
MalI	GATC	1 cut(s)	435
MboI	GATC	1 cut(s)	433
MboII	GAAGA	2 cut(s)	260, 338
MlyI	GAGTC	2 cut(s)	226, 266
MmeI	TCCRAC	1 cut(s)	303
MnlI	CCTC	3 cut(s)	296, 349, 354
MseI	TTAA	2 cut(s)	372, 451
MspI	CCGG	4 cut(s)	164, 182, 194, 352
MspR9I	CCNGG	2 cut(s)	353, 431
MvaI	CCWGG	1 cut(s)	431
MvnI	CGCG	1 cut(s)	154
MwoI	GCNNNNNNNGC	1 cut(s)	103
NciI	CCSGG	1 cut(s)	353
NdeII	GATC	1 cut(s)	433
NlaIV	GGNNCC	1 cut(s)	180
NmuCI	GTSAC	2 cut(s)	34, 258
PciSI	GCTCTTC	1 cut(s)	243
PcsI	WCGNNNNNNNCGW	1 cut(s)	206
PfeI	GAWTC	1 cut(s)	203
PfoI	TCCNGGA	2 cut(s)	351, 429
PkrI	GCNGC	2 cut(s)	105, 169
PleI	GAGTC	2 cut(s)	225, 265
PpsI	GAGTC	2 cut(s)	225, 265
Ppu21I	YACGTR	1 cut(s)	148
PsiI	TTATAA	1 cut(s)	138
Psp6I	CCWGG	1 cut(s)	429
PspGI	CCWGG	1 cut(s)	429
PspN4I	GGNNCC	1 cut(s)	180
PspPI	GGNCC	1 cut(s)	4
PsrI	GAACNNNNNNTAC	2 cut(s)	259, 291
RsaI	GTAC	3 cut(s)	13, 150, 268
RsaNI	GTAC	3 cut(s)	12, 149, 267
SapI	GCTCTTC	1 cut(s)	243
SaqAI	TTAA	2 cut(s)	372, 451
SatI	GCNGC	2 cut(s)	104, 168
Sau3AI	GATC	1 cut(s)	433
Sau96I	GGNCC	1 cut(s)	4
SchI	GAGTC	2 cut(s)	226, 266
ScrFI	CCNGG	2 cut(s)	353, 431
SgrAI	CRCCGGYG	1 cut(s)	163
SinI	GGWCC	1 cut(s)	4
SnaBI	TACGTA	1 cut(s)	148
SsiI	CCGC	3 cut(s)	152, 167, 365
SspI	AATATT	1 cut(s)	72
SspMI	CTAG	2 cut(s)	171, 447
StyD4I	CCNGG	2 cut(s)	351, 429
TaaI	ACNGT	1 cut(s)	264
TaiI	ACGT	2 cut(s)	150, 189
TaqI	TCGA	3 cut(s)	23, 46, 209
TatI	WGTACW	1 cut(s)	266
TauI	GCSGC	1 cut(s)	170
TfiI	GAWTC	1 cut(s)	203
Tru1I	TTAA	2 cut(s)	372, 451
Tru9I	TTAA	2 cut(s)	372, 451
TseFI	GTSAC	2 cut(s)	34, 258
TseI	GCWGC	1 cut(s)	103
Tsp45I	GTSAC	2 cut(s)	34, 258
TspGWI	ACGGA	1 cut(s)	215
VpaK11BI	GGWCC	1 cut(s)	4
XmiI	GTMKAC	1 cut(s)	63
XspI	CTAG	2 cut(s)	171, 447
ZraI	GACGTC	1 cut(s)	187

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.