Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0010552

Physical Location & Seq

Genomic Coordinates Forward (+)

88703405 .. 88704822

Gene Structure 1418 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ35706

Sequence Viewer

CDS Protein Promoter (2k)

Length: 894 bp

ATGGACATTTCCACCCTGGAACCATTATATTATTGCAATGCAGTACAATTTTCTGGGGTTGCTCAAGAAGGTAAGAGACTTTGGATCAGAGCAAGAACCGCACCGATACATTATAGGCTCCTCAAACTAATTCATAGCTGTCGTCGTTGGATTGACCCGTCCGGCGTGGACATGGTTCCGATCAGAGTAAAACTCTACCAGCAAACAGCAACTGTCCGCTGGGATGAGTTTTGTAGAGGCCTTTGTTATGATGAACCAAAATGGGTAACTGAAAGACGATTTATTGTCCCTGTCTCCGATTTCAAGGCATTATCGAAAATGGTTGGTTATAGAAAGATTGTGGCCGGGTATCTTTCCAGCATGCGCGTCCCAGAAGATGAACATGAAGCTATTATTCAAGAAATATTTTGGGCAATTTATCATGCCGTCCCTGAATTTCCCATTATAGTGAGGATACAGCAGTTGACTCTGCAAGCAGCGAACAATGCAATTACATCATATATTGAGGGTTTGGGGAGAGTGAGAGTTGATAGTTTGGAGGAAGCTAATAGACATACAACTTGCGCTATTTGTAGGGAGGACCTTGATCACTTTGAAGGGATTGATAATGATGAGCAGATGATTATTCGCTTGCCCTGCTTGCACCTTTATCATGGAGATTGCATTGTCCCTTGGCTGGAGAGGTGTCTGGACTGCCCCTTGTGTCGACAGTTTATGCCTATTATGCAAGAGGCTAATTCATCATCAAAACCCTCAGGCCTACTGCGTTGGCCTACGCTGCTCATGCACATCTTGCATAGCCGCCTCTGCTGTTTATATAACTTACCATTGACCTTGTATTTGGCTGTTCAATTATTTTCCTTCAGTGTTTCAATTGTTTCTTTTCTTTTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-RING_2 zf-rbx1

Protein Analysis

297

Amino Acids

34.51

Weight (kDa)

6.78

Isoelectric Point (pI)

51.0

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-RING_2	PF13639	187 - 236	1.5e-08	Ring finger domain
zf-rbx1	PF12678	187 - 236	4.4e-07	RING-H2 zinc finger domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010552)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g45030 FvH4_5g04570 FvH4_5g05561 FvH4_5g05590 FvH4_5g09840 FvH4_5g09840 FvH4_6g41381 FvH4_6g41383
rosa_chinensis	RchiOBHm_Chr5g0082881
rosa_multiflora	Rmu_co8151450.1_g000001 Rmu_sc0001381.1_g000010 Rmu_sc0023803.1_g000002
rosa_roxburghii	Rroxscaffold_1G00001560
rosa_rugosa	Rorug05G0480600 Rorug05G0480800 Rorug07G0017100
rosa_samantha	Rh1DG078100 Rh5AG531000 Rh5DG566300
rosa_wichuraiana	Rw5G049770 Rw7G012350

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	706
AccII	CGCG	1 cut(s)	366
AciI	CCGC	3 cut(s)	99, 217, 802
AclWI	GGATC	1 cut(s)	92
AcoI	YGGCCR	1 cut(s)	342
AcsI	RAATTY	1 cut(s)	434
AcuI	CTGAAG	1 cut(s)	847
AfaI	GTAC	1 cut(s)	45
AfiI	CCNNNNNNNGG	1 cut(s)	676
AgsI	TTSAA	5 cut(s)	304, 398, 596, 851, 873
AjnI	CCWGG	1 cut(s)	15
AluBI	AGCT	3 cut(s)	138, 389, 545
AluI	AGCT	3 cut(s)	138, 389, 545
Alw26I	GTCTC	2 cut(s)	70, 298
AlwI	GGATC	1 cut(s)	92
AlwNI	CAGNNNCTG	1 cut(s)	212
AoxI	GGCC	4 cut(s)	238, 342, 757, 770
ApeKI	GCWGC	2 cut(s)	476, 778
ApoI	RAATTY	1 cut(s)	434
ArsI	GACNNNNNNTTYG	2 cut(s)	823, 855
AspLEI	GCGC	2 cut(s)	366, 566
AspS9I	GGNCC	1 cut(s)	580
AsuC2I	CCSGG	1 cut(s)	346
AvaII	GGWCC	1 cut(s)	580
AxyI	CCTNAGG	1 cut(s)	754
BaeI	ACNNNNGTAYC	2 cut(s)	446, 479
BbvI	GCAGC	2 cut(s)	488, 765
BceAI	ACGGC	1 cut(s)	410
BciT130I	CCWGG	1 cut(s)	17
BciVI	GTATCC	1 cut(s)	447
BclI	TGATCA	1 cut(s)	586
BcnI	CCSGG	1 cut(s)	346
BcoDI	GTCTC	2 cut(s)	70, 298
BfuI	GTATCC	1 cut(s)	447
BisI	GCNGC	3 cut(s)	477, 779, 802
BlsI	GCNGC	3 cut(s)	478, 780, 803
Bme1390I	CCNGG	2 cut(s)	17, 346
Bme18I	GGWCC	1 cut(s)	580
BmgT120I	GGNCC	1 cut(s)	580
BmiI	GGNNCC	3 cut(s)	21, 119, 177
BmrFI	CCNGG	2 cut(s)	17, 346
BplI	GAGNNNNNCTC	2 cut(s)	177, 209
BpmI	CTGGAG	1 cut(s)	698
BpuEI	CTTGAG	1 cut(s)	48
BpuMI	CCSGG	1 cut(s)	346
BsaJI	CCNNGG	2 cut(s)	15, 671
Bsc4I	CCNNNNNNNGG	1 cut(s)	676
Bse21I	CCTNAGG	1 cut(s)	754
Bse3DI	GCAATG	1 cut(s)	43
BseBI	CCWGG	1 cut(s)	17
BseDI	CCNNGG	2 cut(s)	15, 671
BseGI	GGATG	1 cut(s)	229
BseLI	CCNNNNNNNGG	1 cut(s)	676
BseMI	GCAATG	1 cut(s)	43
BseMII	CTCAG	1 cut(s)	768
BseRI	GAGGAG	1 cut(s)	110
BseXI	GCAGC	2 cut(s)	488, 765
BseYI	CCCAGC	1 cut(s)	219
Bsh1236I	CGCG	1 cut(s)	366
BshFI	GGCC	4 cut(s)	240, 344, 759, 772
BsiSI	CCGG	2 cut(s)	162, 345
BslFI	GGGAC	4 cut(s)	272, 353, 413, 653
BslI	CCNNNNNNNGG	1 cut(s)	676
BsmAI	GTCTC	2 cut(s)	70, 298
BsmFI	GGGAC	4 cut(s)	272, 353, 413, 653
BsnI	GGCC	4 cut(s)	240, 344, 759, 772
Bsp143I	GATC	3 cut(s)	84, 180, 586
BspACI	CCGC	3 cut(s)	99, 217, 802
BspANI	GGCC	4 cut(s)	240, 344, 759, 772
BspCNI	CTCAG	1 cut(s)	767
BspFNI	CGCG	1 cut(s)	366
BspLI	GGNNCC	3 cut(s)	21, 119, 177
BspPI	GGATC	1 cut(s)	92
BsrDI	GCAATG	1 cut(s)	43
BssECI	CCNNGG	2 cut(s)	15, 671
BssMI	GATC	3 cut(s)	84, 180, 586
BssT1I	CCWWGG	1 cut(s)	671
Bst2UI	CCWGG	1 cut(s)	17
Bst4CI	ACNGT	2 cut(s)	214, 711
BstAPI	GCANNNNNTGC	1 cut(s)	793
BstC8I	GCNNGC	4 cut(s)	362, 474, 632, 641
BstDEI	CTNAG	1 cut(s)	754
BstF5I	GGATG	1 cut(s)	229
BstFNI	CGCG	1 cut(s)	366
BstHHI	GCGC	2 cut(s)	366, 566
BstKTI	GATC	3 cut(s)	87, 183, 589
BstMAI	GTCTC	2 cut(s)	70, 298
BstMBI	GATC	3 cut(s)	84, 180, 586
BstMWI	GCNNNNNNNGC	9 cut(s)	98, 485, 636, 640, 724, 778, 784, 793, 807
BstNI	CCWGG	1 cut(s)	17
BstNSI	RCATGY	1 cut(s)	364
BstSCI	CCNGG	2 cut(s)	15, 344
BstUI	CGCG	1 cut(s)	366
BstV1I	GCAGC	2 cut(s)	488, 765
Bsu36I	CCTNAGG	1 cut(s)	754
BsuI	GTATCC	1 cut(s)	447
BsuRI	GGCC	4 cut(s)	240, 344, 759, 772
BtsCI	GGATG	1 cut(s)	229
BtsIMutI	CAGTG	1 cut(s)	871
Cac8I	GCNNGC	4 cut(s)	362, 474, 632, 641
CaiI	CAGNNNCTG	1 cut(s)	212
CfoI	GCGC	2 cut(s)	366, 566
Cfr13I	GGNCC	1 cut(s)	580
CseI	GACGC	1 cut(s)	355
Csp6I	GTAC	1 cut(s)	44
CviAII	CATG	6 cut(s)	172, 361, 383, 422, 653, 784
CviQI	GTAC	1 cut(s)	44
DdeI	CTNAG	1 cut(s)	754
DpnI	GATC	3 cut(s)	86, 182, 588
DpnII	GATC	3 cut(s)	84, 180, 586
EaeI	YGGCCR	1 cut(s)	342
Eco130I	CCWWGG	1 cut(s)	671
Eco147I	AGGCCT	2 cut(s)	240, 759
Eco47I	GGWCC	1 cut(s)	580
Eco57I	CTGAAG	1 cut(s)	847
Eco81I	CCTNAGG	1 cut(s)	754
EcoO109I	RGGNCCY	1 cut(s)	580
EcoRII	CCWGG	1 cut(s)	15
EcoT14I	CCWWGG	1 cut(s)	671
ErhI	CCWWGG	1 cut(s)	671
FaeI	CATG	6 cut(s)	175, 364, 386, 425, 656, 787
FaqI	GGGAC	4 cut(s)	272, 353, 413, 653
FatI	CATG	6 cut(s)	171, 360, 382, 421, 652, 783
FbaI	TGATCA	1 cut(s)	586
FblI	GTMKAC	1 cut(s)	706
Fnu4HI	GCNGC	3 cut(s)	477, 779, 802
FokI	GGATG	1 cut(s)	236
Fsp4HI	GCNGC	3 cut(s)	477, 779, 802
GlaI	GCGC	2 cut(s)	365, 565
GluI	GCNGC	3 cut(s)	477, 779, 802
GsaI	CCCAGC	1 cut(s)	223
GsuI	CTGGAG	1 cut(s)	698
HaeIII	GGCC	4 cut(s)	240, 344, 759, 772
HapII	CCGG	2 cut(s)	162, 345
HgaI	GACGC	1 cut(s)	355
HhaI	GCGC	2 cut(s)	366, 566
Hin1II	CATG	6 cut(s)	175, 364, 386, 425, 656, 787
Hin6I	GCGC	2 cut(s)	364, 564
HinP1I	GCGC	2 cut(s)	364, 564
HincII	GTYRAC	2 cut(s)	465, 707
HindII	GTYRAC	2 cut(s)	465, 707
HinfI	GANTC	1 cut(s)	466
HpaII	CCGG	2 cut(s)	162, 345
Hpy166II	GTNNAC	3 cut(s)	169, 465, 707
Hpy188I	TCNGA	4 cut(s)	89, 180, 185, 298
Hpy188III	TCNNGA	3 cut(s)	65, 398, 689
Hpy8I	GTNNAC	3 cut(s)	169, 465, 707
Hpy99I	CGWCG	1 cut(s)	147
HpyAV	CCTTC	3 cut(s)	62, 590, 871
HpyCH4III	ACNGT	2 cut(s)	214, 711
HpyCH4V	TGCA	9 cut(s)	36, 41, 472, 488, 643, 663, 727, 787, 796
HpyF10VI	GCNNNNNNNGC	9 cut(s)	98, 485, 636, 640, 724, 778, 784, 793, 807
HpyF3I	CTNAG	1 cut(s)	754
Hsp92II	CATG	6 cut(s)	175, 364, 386, 425, 656, 787
HspAI	GCGC	2 cut(s)	364, 564
Ksp22I	TGATCA	1 cut(s)	586
Kzo9I	GATC	3 cut(s)	84, 180, 586
LmnI	GCTCC	1 cut(s)	123
Lsp1109I	GCAGC	2 cut(s)	488, 765
MaeIII	GTNAC	1 cut(s)	265
MalI	GATC	3 cut(s)	86, 182, 588
MboI	GATC	3 cut(s)	84, 180, 586
MboII	GAAGA	1 cut(s)	386
MfeI	CAATTG	1 cut(s)	873
MluCI	AATT	8 cut(s)	47, 129, 414, 434, 489, 736, 851, 873
MlyI	GAGTC	1 cut(s)	460
MmeI	TCCRAC	1 cut(s)	128
MseI	TTAA	1 cut(s)	892
MslI	CAYNNNNRTG	1 cut(s)	446
MspA1I	CMGCKG	1 cut(s)	219
MspI	CCGG	2 cut(s)	162, 345
MspR9I	CCNGG	2 cut(s)	17, 346
MunI	CAATTG	1 cut(s)	873
MvaI	CCWGG	1 cut(s)	17
MvnI	CGCG	1 cut(s)	366
MwoI	GCNNNNNNNGC	9 cut(s)	98, 485, 636, 640, 724, 778, 784, 793, 807
NciI	CCSGG	1 cut(s)	346
NdeII	GATC	3 cut(s)	84, 180, 586
NlaIII	CATG	6 cut(s)	175, 364, 386, 425, 656, 787
NlaIV	GGNNCC	3 cut(s)	21, 119, 177
NspI	RCATGY	1 cut(s)	364
PaeI	GCATGC	1 cut(s)	364
PceI	AGGCCT	2 cut(s)	240, 759
PkrI	GCNGC	3 cut(s)	478, 780, 803
PleI	GAGTC	1 cut(s)	460
PpsI	GAGTC	1 cut(s)	460
PpuMI	RGGWCCY	1 cut(s)	580
Psp5II	RGGWCCY	1 cut(s)	580
Psp6I	CCWGG	1 cut(s)	15
PspFI	CCCAGC	1 cut(s)	219
PspGI	CCWGG	1 cut(s)	15
PspN4I	GGNNCC	3 cut(s)	21, 119, 177
PspPI	GGNCC	1 cut(s)	580
PspPPI	RGGWCCY	1 cut(s)	580
PstNI	CAGNNNCTG	1 cut(s)	212
RsaI	GTAC	1 cut(s)	45
RsaNI	GTAC	1 cut(s)	44
RseI	CAYNNNNRTG	1 cut(s)	446
SalI	GTCGAC	1 cut(s)	705
SaqAI	TTAA	1 cut(s)	892
SatI	GCNGC	3 cut(s)	477, 779, 802
Sau3AI	GATC	3 cut(s)	84, 180, 586
Sau96I	GGNCC	1 cut(s)	580
SchI	GAGTC	1 cut(s)	460
ScrFI	CCNGG	2 cut(s)	17, 346
SetI	ASST	8 cut(s)	73, 140, 391, 547, 585, 648, 686, 836
SinI	GGWCC	1 cut(s)	580
SmiMI	CAYNNNNRTG	1 cut(s)	446
SmlI	CTYRAG	1 cut(s)	63
SmoI	CTYRAG	1 cut(s)	63
SphI	GCATGC	1 cut(s)	364
Sse9I	AATT	8 cut(s)	47, 129, 414, 434, 489, 736, 851, 873
SseBI	AGGCCT	2 cut(s)	240, 759
SsiI	CCGC	3 cut(s)	99, 217, 802
SspI	AATATT	1 cut(s)	405
StuI	AGGCCT	2 cut(s)	240, 759
StyD4I	CCNGG	2 cut(s)	15, 344
StyI	CCWWGG	1 cut(s)	671
TaaI	ACNGT	2 cut(s)	214, 711
TaqI	TCGA	2 cut(s)	314, 706
TasI	AATT	8 cut(s)	47, 129, 414, 434, 489, 736, 851, 873
TatI	WGTACW	1 cut(s)	43
TauI	GCSGC	1 cut(s)	804
Tru1I	TTAA	1 cut(s)	892
Tru9I	TTAA	1 cut(s)	892
TscAI	CASTG	1 cut(s)	871
TseI	GCWGC	2 cut(s)	476, 778
TspDTI	ATGAA	5 cut(s)	122, 267, 393, 399, 729
TspRI	CASTG	1 cut(s)	871
VpaK11BI	GGWCC	1 cut(s)	580
XapI	RAATTY	1 cut(s)	434
XceI	RCATGY	1 cut(s)	364
XmiI	GTMKAC	1 cut(s)	706

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.