Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr5

Orthogroup ID

OG0010552

Physical Location & Seq

Genomic Coordinates Reverse (-)

86338418 .. 86339651

Gene Structure 1234 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw5G049770.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 843 bp

ATGGACATTTCCACCCTGGAACCATTATATTATTGCAATGCAGTACAATTTTCTGGGGTTGCTCAAGAAGGTAAGAGACTTTGGATCAGAGCAAGAACTGCACCGATACATTATAGGCTCCTCAAGCTAATTCATAGCTGTCGTCGTTGGATTGACCCGTCCGGCGTGGACATGGTTCCGATCAGAATAAAACTCTACCAGCAAACAGCAACTGTCCGCTGGGATGAGTTTTGTAGAGGCCTTTGTTATGATGAACCAAAATGGGTAACTGAAAGACGATTTATTGTCCCTGTCTCTGATTTCAAGGCATTATCGAAAATGGGTGGTTATAGAAAGATTGTGGCCGGGTATCTTTCCAGCATGCGCGTCCCAGAAGATGAGCAGGAAGCTATTATTCAAGAAATATTTTGGGCGATTTATCATGCCGTCCCTGAATTTCCCATTATTGTGAGGATACAGCAGTTGACTCTGCAAGCAGCGAACAATGCAATTGCATCATATATTGAGGGTTTGGAGAGAGTGAGAGTTGATAGTTTGGAGGAAGCTAATAGACATACAACTTGCGCTATTTGTAGGGAGGACCTTGATTACTTTGAAGGGATTGATAATGATGAGCAGATGATTATTCGCTTGCCCTGCTTGCACCTTTATCATGGAGATTGCATTGTCCCTTGGCTGGAGAGGTGTCTGGACTGCCCCTTGTGTCGACAGTTTATGCCTTTTCTTATGCCTATTATGCAAGAGGCTAATTCATCATCAAAACCCTCAGGCCAACTGCGTTGGCCTACGCTGCTCATGATGTCTGCTGGCGCTGAAATGGAGAGAGGGAGAGTGAGTGAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-RING_2 zf-rbx1

Protein Analysis

280

Amino Acids

32.5

Weight (kDa)

5.94

Isoelectric Point (pI)

53.79

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-RING_2	PF13639	187 - 236	1e-08	Ring finger domain
zf-rbx1	PF12678	187 - 236	3.3e-07	RING-H2 zinc finger domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010552)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g45030 FvH4_5g04570 FvH4_5g05561 FvH4_5g05590 FvH4_5g09840 FvH4_5g09840 FvH4_6g41381 FvH4_6g41383
rosa_chinensis	RchiOBHm_Chr5g0082881
rosa_multiflora	Rmu_co8151450.1_g000001 Rmu_sc0001381.1_g000010 Rmu_sc0023803.1_g000002
rosa_roxburghii	Rroxscaffold_1G00001560
rosa_rugosa	Rorug05G0480600 Rorug05G0480800 Rorug07G0017100
rosa_samantha	Rh1DG078100 Rh5AG531000 Rh5DG566300
rosa_wichuraiana	Rw5G049770 Rw7G012350

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	706
AccII	CGCG	1 cut(s)	366
AciI	CCGC	1 cut(s)	217
AclWI	GGATC	1 cut(s)	92
AcoI	YGGCCR	1 cut(s)	342
AcsI	RAATTY	1 cut(s)	434
AfaI	GTAC	1 cut(s)	45
AfiI	CCNNNNNNNGG	1 cut(s)	676
AgsI	TTSAA	3 cut(s)	304, 398, 596
AjnI	CCWGG	1 cut(s)	15
AluBI	AGCT	4 cut(s)	127, 138, 389, 545
AluI	AGCT	4 cut(s)	127, 138, 389, 545
Alw26I	GTCTC	2 cut(s)	70, 298
AlwI	GGATC	1 cut(s)	92
AlwNI	CAGNNNCTG	1 cut(s)	212
AoxI	GGCC	4 cut(s)	238, 342, 769, 782
ApeKI	GCWGC	2 cut(s)	476, 790
ApoI	RAATTY	1 cut(s)	434
AspLEI	GCGC	3 cut(s)	366, 566, 812
AspS9I	GGNCC	1 cut(s)	580
AsuC2I	CCSGG	1 cut(s)	346
AvaII	GGWCC	1 cut(s)	580
AxyI	CCTNAGG	1 cut(s)	766
BaeI	ACNNNNGTAYC	2 cut(s)	446, 479
BbvI	GCAGC	2 cut(s)	488, 777
BceAI	ACGGC	1 cut(s)	410
BciT130I	CCWGG	1 cut(s)	17
BciVI	GTATCC	1 cut(s)	447
BcnI	CCSGG	1 cut(s)	346
BcoDI	GTCTC	2 cut(s)	70, 298
BfoI	RGCGCY	1 cut(s)	813
BfuI	GTATCC	1 cut(s)	447
BisI	GCNGC	2 cut(s)	477, 791
BlsI	GCNGC	2 cut(s)	478, 792
Bme1390I	CCNGG	2 cut(s)	17, 346
Bme18I	GGWCC	1 cut(s)	580
BmgT120I	GGNCC	1 cut(s)	580
BmiI	GGNNCC	3 cut(s)	21, 119, 177
BmrFI	CCNGG	2 cut(s)	17, 346
BmsI	GCATC	1 cut(s)	503
BpmI	CTGGAG	1 cut(s)	698
BpuEI	CTTGAG	2 cut(s)	48, 107
BpuMI	CCSGG	1 cut(s)	346
BsaJI	CCNNGG	2 cut(s)	15, 671
BsaXI	ACNNNNNCTCC	1 cut(s)	820
Bsc4I	CCNNNNNNNGG	1 cut(s)	676
Bse21I	CCTNAGG	1 cut(s)	766
Bse3DI	GCAATG	1 cut(s)	43
BseBI	CCWGG	1 cut(s)	17
BseDI	CCNNGG	2 cut(s)	15, 671
BseGI	GGATG	1 cut(s)	229
BseLI	CCNNNNNNNGG	1 cut(s)	676
BseMI	GCAATG	1 cut(s)	43
BseMII	CTCAG	1 cut(s)	780
BseRI	GAGGAG	1 cut(s)	110
BseXI	GCAGC	2 cut(s)	488, 777
BseYI	CCCAGC	1 cut(s)	219
BsgI	GTGCAG	1 cut(s)	84
Bsh1236I	CGCG	1 cut(s)	366
BshFI	GGCC	4 cut(s)	240, 344, 771, 784
BsiSI	CCGG	2 cut(s)	162, 345
BslFI	GGGAC	4 cut(s)	272, 353, 413, 653
BslI	CCNNNNNNNGG	1 cut(s)	676
BsmAI	GTCTC	2 cut(s)	70, 298
BsmFI	GGGAC	4 cut(s)	272, 353, 413, 653
BsnI	GGCC	4 cut(s)	240, 344, 771, 784
Bsp143I	GATC	2 cut(s)	84, 180
BspACI	CCGC	1 cut(s)	217
BspANI	GGCC	4 cut(s)	240, 344, 771, 784
BspCNI	CTCAG	1 cut(s)	779
BspFNI	CGCG	1 cut(s)	366
BspHI	TCATGA	1 cut(s)	795
BspLI	GGNNCC	3 cut(s)	21, 119, 177
BspPI	GGATC	1 cut(s)	92
BsrDI	GCAATG	1 cut(s)	43
BssECI	CCNNGG	2 cut(s)	15, 671
BssMI	GATC	2 cut(s)	84, 180
BssT1I	CCWWGG	1 cut(s)	671
Bst2UI	CCWGG	1 cut(s)	17
Bst4CI	ACNGT	2 cut(s)	214, 711
BstAPI	GCANNNNNTGC	1 cut(s)	98
BstC8I	GCNNGC	5 cut(s)	362, 474, 632, 641, 808
BstDEI	CTNAG	1 cut(s)	766
BstF5I	GGATG	1 cut(s)	229
BstFNI	CGCG	1 cut(s)	366
BstH2I	RGCGCY	1 cut(s)	813
BstHHI	GCGC	3 cut(s)	366, 566, 812
BstKTI	GATC	2 cut(s)	87, 183
BstMAI	GTCTC	2 cut(s)	70, 298
BstMBI	GATC	2 cut(s)	84, 180
BstMWI	GCNNNNNNNGC	7 cut(s)	98, 124, 485, 636, 640, 736, 790
BstNI	CCWGG	1 cut(s)	17
BstNSI	RCATGY	1 cut(s)	364
BstSCI	CCNGG	2 cut(s)	15, 344
BstUI	CGCG	1 cut(s)	366
BstV1I	GCAGC	2 cut(s)	488, 777
Bsu36I	CCTNAGG	1 cut(s)	766
BsuI	GTATCC	1 cut(s)	447
BsuRI	GGCC	4 cut(s)	240, 344, 771, 784
BtsCI	GGATG	1 cut(s)	229
Cac8I	GCNNGC	5 cut(s)	362, 474, 632, 641, 808
CaiI	CAGNNNCTG	1 cut(s)	212
CciI	TCATGA	1 cut(s)	795
CfoI	GCGC	3 cut(s)	366, 566, 812
Cfr13I	GGNCC	1 cut(s)	580
CseI	GACGC	1 cut(s)	355
Csp6I	GTAC	1 cut(s)	44
CviAII	CATG	5 cut(s)	172, 361, 422, 653, 796
CviQI	GTAC	1 cut(s)	44
DdeI	CTNAG	1 cut(s)	766
DpnI	GATC	2 cut(s)	86, 182
DpnII	GATC	2 cut(s)	84, 180
EaeI	YGGCCR	1 cut(s)	342
Eco130I	CCWWGG	1 cut(s)	671
Eco147I	AGGCCT	1 cut(s)	240
Eco47I	GGWCC	1 cut(s)	580
Eco81I	CCTNAGG	1 cut(s)	766
EcoO109I	RGGNCCY	1 cut(s)	580
EcoRII	CCWGG	1 cut(s)	15
EcoT14I	CCWWGG	1 cut(s)	671
ErhI	CCWWGG	1 cut(s)	671
FaeI	CATG	5 cut(s)	175, 364, 425, 656, 799
FaqI	GGGAC	4 cut(s)	272, 353, 413, 653
FatI	CATG	5 cut(s)	171, 360, 421, 652, 795
FblI	GTMKAC	1 cut(s)	706
Fnu4HI	GCNGC	2 cut(s)	477, 791
FokI	GGATG	1 cut(s)	236
Fsp4HI	GCNGC	2 cut(s)	477, 791
GlaI	GCGC	3 cut(s)	365, 565, 811
GluI	GCNGC	2 cut(s)	477, 791
GsaI	CCCAGC	1 cut(s)	223
GsuI	CTGGAG	1 cut(s)	698
HaeII	RGCGCY	1 cut(s)	813
HaeIII	GGCC	4 cut(s)	240, 344, 771, 784
HapII	CCGG	2 cut(s)	162, 345
HgaI	GACGC	1 cut(s)	355
HhaI	GCGC	3 cut(s)	366, 566, 812
Hin1II	CATG	5 cut(s)	175, 364, 425, 656, 799
Hin6I	GCGC	3 cut(s)	364, 564, 810
HinP1I	GCGC	3 cut(s)	364, 564, 810
HincII	GTYRAC	2 cut(s)	465, 707
HindII	GTYRAC	2 cut(s)	465, 707
HinfI	GANTC	1 cut(s)	466
HpaII	CCGG	2 cut(s)	162, 345
Hpy166II	GTNNAC	3 cut(s)	169, 465, 707
Hpy188I	TCNGA	4 cut(s)	89, 180, 185, 298
Hpy188III	TCNNGA	4 cut(s)	65, 398, 689, 796
Hpy8I	GTNNAC	3 cut(s)	169, 465, 707
Hpy99I	CGWCG	1 cut(s)	147
HpyAV	CCTTC	2 cut(s)	62, 590
HpyCH4III	ACNGT	2 cut(s)	214, 711
HpyCH4V	TGCA	9 cut(s)	36, 41, 101, 472, 488, 494, 643, 663, 739
HpyF10VI	GCNNNNNNNGC	7 cut(s)	98, 124, 485, 636, 640, 736, 790
HpyF3I	CTNAG	1 cut(s)	766
Hsp92II	CATG	5 cut(s)	175, 364, 425, 656, 799
HspAI	GCGC	3 cut(s)	364, 564, 810
Kzo9I	GATC	2 cut(s)	84, 180
LmnI	GCTCC	1 cut(s)	123
Lsp1109I	GCAGC	2 cut(s)	488, 777
LweI	GCATC	1 cut(s)	503
MaeIII	GTNAC	1 cut(s)	265
MalI	GATC	2 cut(s)	86, 182
MboI	GATC	2 cut(s)	84, 180
MboII	GAAGA	1 cut(s)	386
MfeI	CAATTG	1 cut(s)	489
MluCI	AATT	5 cut(s)	47, 129, 434, 489, 748
MlyI	GAGTC	1 cut(s)	460
MmeI	TCCRAC	1 cut(s)	128
MslI	CAYNNNNRTG	1 cut(s)	446
MspA1I	CMGCKG	1 cut(s)	219
MspI	CCGG	2 cut(s)	162, 345
MspR9I	CCNGG	2 cut(s)	17, 346
MunI	CAATTG	1 cut(s)	489
MvaI	CCWGG	1 cut(s)	17
MvnI	CGCG	1 cut(s)	366
MwoI	GCNNNNNNNGC	7 cut(s)	98, 124, 485, 636, 640, 736, 790
NciI	CCSGG	1 cut(s)	346
NdeII	GATC	2 cut(s)	84, 180
NlaIII	CATG	5 cut(s)	175, 364, 425, 656, 799
NlaIV	GGNNCC	3 cut(s)	21, 119, 177
NspI	RCATGY	1 cut(s)	364
PaeI	GCATGC	1 cut(s)	364
PagI	TCATGA	1 cut(s)	795
PceI	AGGCCT	1 cut(s)	240
PkrI	GCNGC	2 cut(s)	478, 792
PleI	GAGTC	1 cut(s)	460
PpsI	GAGTC	1 cut(s)	460
PpuMI	RGGWCCY	1 cut(s)	580
Psp5II	RGGWCCY	1 cut(s)	580
Psp6I	CCWGG	1 cut(s)	15
PspFI	CCCAGC	1 cut(s)	219
PspGI	CCWGG	1 cut(s)	15
PspN4I	GGNNCC	3 cut(s)	21, 119, 177
PspPI	GGNCC	1 cut(s)	580
PspPPI	RGGWCCY	1 cut(s)	580
PstNI	CAGNNNCTG	1 cut(s)	212
RsaI	GTAC	1 cut(s)	45
RsaNI	GTAC	1 cut(s)	44
RseI	CAYNNNNRTG	1 cut(s)	446
SalI	GTCGAC	1 cut(s)	705
SatI	GCNGC	2 cut(s)	477, 791
Sau3AI	GATC	2 cut(s)	84, 180
Sau96I	GGNCC	1 cut(s)	580
SchI	GAGTC	1 cut(s)	460
ScrFI	CCNGG	2 cut(s)	17, 346
SetI	ASST	8 cut(s)	73, 129, 140, 391, 547, 585, 648, 686
SfaNI	GCATC	1 cut(s)	503
SinI	GGWCC	1 cut(s)	580
SmiMI	CAYNNNNRTG	1 cut(s)	446
SmlI	CTYRAG	2 cut(s)	63, 122
SmoI	CTYRAG	2 cut(s)	63, 122
SphI	GCATGC	1 cut(s)	364
Sse9I	AATT	5 cut(s)	47, 129, 434, 489, 748
SseBI	AGGCCT	1 cut(s)	240
SsiI	CCGC	1 cut(s)	217
SspI	AATATT	1 cut(s)	405
StuI	AGGCCT	1 cut(s)	240
StyD4I	CCNGG	2 cut(s)	15, 344
StyI	CCWWGG	1 cut(s)	671
TaaI	ACNGT	2 cut(s)	214, 711
TaqI	TCGA	2 cut(s)	314, 706
TasI	AATT	5 cut(s)	47, 129, 434, 489, 748
TatI	WGTACW	1 cut(s)	43
TseI	GCWGC	2 cut(s)	476, 790
TspDTI	ATGAA	3 cut(s)	122, 267, 741
VpaK11BI	GGWCC	1 cut(s)	580
XapI	RAATTY	1 cut(s)	434
XceI	RCATGY	1 cut(s)	364
XmiI	GTMKAC	1 cut(s)	706

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.