Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0023803.1

Orthogroup ID

OG0010552

Physical Location & Seq

Genomic Coordinates Reverse (-)

3464 .. 6833

Gene Structure 3370 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0023803.1_g000002.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 780 bp

atgtcgcgggtcgccggtggacttctggatcctatctgggctgttgcttggtatagcagatccgatctggttatggattcctggatcggtgaggcgcaggttgtggtgtgctggcagtggagcgatcagattggtggaatgccggcagtggagcaactgatggtggcaccccattgcaggtggtggcgtggcaaggattgtgggtggctggtggaggctatacaagaattggattgggccctgcatatggcctgtgttttccttattacttggggtaggggggaaacagtagaaaccctccccagcttgacgacttcagacggaaaggattggcttccgatcaaattaggcctcttcagtacattaaccgggaggcgtcgttggatttatgcggatccagatgcagattctatttatgaagaaccaaaccttataacccaaagacgaatgttagtccctctcgatgatgtgaaactattatctcgaagggatgcgtatacagtggtgatggttaggtatctttccaacatgggtgtccctcaacaagagcagcctgctattattgaagaaatatttaaggctgttgacgtggcagtccccaagctgcctgttgtggttgcttttggggacgtgacctttgtggacagcggcggactttttcctgcaactaaatcagcaattcaggatttggagaaagtgagacttaatagtttggatgaagctactattacagggacgccttcatgtgttatttgcttgaagggccttgatcaccaatag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000209 GO:0000902 GO:0000904 GO:0003006 GO:0003674 GO:0003824 GO:0004842 GO:0006464 GO:0006508 GO:0006511 GO:0006807 GO:0007275 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009653 GO:0009791 GO:0009826 GO:0009888 GO:0009987 GO:0010026 GO:0010154 GO:0010498 GO:0016043 GO:0016049 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0019941 GO:0022412 GO:0022414 GO:0030154 GO:0030163 GO:0032446 GO:0032501 GO:0032502 GO:0032504 GO:0032989 GO:0036211 GO:0040007 GO:0043161 GO:0043170 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0048316 GO:0048468 GO:0048589 GO:0048608 GO:0048731 GO:0048856 GO:0048869 GO:0051603 GO:0060560 GO:0061458 GO:0061630 GO:0061659 GO:0070647 GO:0071704 GO:0071840 GO:0090376 GO:0090378 GO:0090558 GO:0140096 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-RING_2 zf-rbx1

Protein Analysis

259

Amino Acids

28.99

Weight (kDa)

4.79

Isoelectric Point (pI)

51.67

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010552)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g45030 FvH4_5g04570 FvH4_5g05561 FvH4_5g05590 FvH4_5g09840 FvH4_5g09840 FvH4_6g41381 FvH4_6g41383
rosa_chinensis	RchiOBHm_Chr5g0082881
rosa_multiflora	Rmu_co8151450.1_g000001 Rmu_sc0001381.1_g000010 Rmu_sc0023803.1_g000002
rosa_roxburghii	Rroxscaffold_1G00001560
rosa_rugosa	Rorug05G0480600 Rorug05G0480800 Rorug07G0017100
rosa_samantha	Rh1DG078100 Rh5AG531000 Rh5DG566300
rosa_wichuraiana	Rw5G049770 Rw7G012350

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	434
AarI	CACCTGC	1 cut(s)	168
AasI	GACNNNNNNGTC	1 cut(s)	593
Acc36I	ACCTGC	2 cut(s)	88, 168
AccB1I	GGYRCC	1 cut(s)	166
AccI	GTMKAC	1 cut(s)	497
AccII	CGCG	1 cut(s)	7
AciI	CCGC	4 cut(s)	7, 392, 648, 651
AclWI	GGATC	6 cut(s)	23, 36, 54, 92, 389, 402
AcuI	CTGAAG	2 cut(s)	300, 340
AcyI	GRCGYC	2 cut(s)	376, 737
AfaI	GTAC	1 cut(s)	361
AfiI	CCNNNNNNNGG	2 cut(s)	177, 247
AgsI	TTSAA	2 cut(s)	566, 760
AjiI	CACGTC	2 cut(s)	589, 631
AjnI	CCWGG	1 cut(s)	80
AluBI	AGCT	3 cut(s)	306, 604, 722
AluI	AGCT	3 cut(s)	306, 604, 722
Alw26I	GTCTC	1 cut(s)	694
AlwI	GGATC	6 cut(s)	23, 36, 54, 92, 389, 402
AoxI	GGCC	4 cut(s)	237, 249, 349, 763
ApaI	GGGCCC	1 cut(s)	241
ApeKI	GCWGC	2 cut(s)	550, 604
ArsI	GACNNNNNNTTYG	2 cut(s)	620, 652
AspLEI	GCGC	1 cut(s)	97
AspS9I	GGNCC	3 cut(s)	237, 238, 763
AsuC2I	CCSGG	1 cut(s)	370
AsuHPI	GGTGA	3 cut(s)	101, 517, 764
BaeGI	GKGCMC	1 cut(s)	241
BamHI	GGATCC	2 cut(s)	28, 394
BanI	GGYRCC	1 cut(s)	166
BanII	GRGCYC	1 cut(s)	241
BbvI	GCAGC	2 cut(s)	562, 591
BccI	CCATC	2 cut(s)	154, 502
BciT130I	CCWGG	1 cut(s)	82
BclI	TGATCA	1 cut(s)	769
BcnI	CCSGG	1 cut(s)	370
BcoDI	GTCTC	1 cut(s)	694
BfuAI	ACCTGC	2 cut(s)	88, 168
BisI	GCNGC	3 cut(s)	551, 605, 649
BlsI	GCNGC	3 cut(s)	552, 606, 650
Bme1390I	CCNGG	2 cut(s)	82, 370
BmgBI	CACGTC	2 cut(s)	589, 631
BmgT120I	GGNCC	3 cut(s)	237, 238, 763
BmiI	GGNNCC	4 cut(s)	30, 168, 239, 396
BmrFI	CCNGG	2 cut(s)	82, 370
BmsI	GCATC	2 cut(s)	391, 481
BpuMI	CCSGG	1 cut(s)	370
BsaHI	GRCGYC	2 cut(s)	376, 737
BsaXI	ACNNNNNCTCC	2 cut(s)	364, 394
Bsc4I	CCNNNNNNNGG	2 cut(s)	177, 247
Bse118I	RCCGGY	2 cut(s)	14, 142
Bse3DI	GCAATG	1 cut(s)	172
BseBI	CCWGG	1 cut(s)	82
BseGI	GGATG	2 cut(s)	496, 721
BseLI	CCNNNNNNNGG	2 cut(s)	177, 247
BseMI	GCAATG	1 cut(s)	172
BseSI	GKGCMC	1 cut(s)	241
BseXI	GCAGC	2 cut(s)	562, 591
BseYI	CCCAGC	1 cut(s)	302
Bsh1236I	CGCG	1 cut(s)	7
BshFI	GGCC	4 cut(s)	239, 251, 351, 765
BshNI	GGYRCC	1 cut(s)	166
BsiSI	CCGG	3 cut(s)	15, 143, 369
BslFI	GGGAC	5 cut(s)	440, 521, 581, 641, 748
BslI	CCNNNNNNNGG	2 cut(s)	177, 247
BsmAI	GTCTC	1 cut(s)	694
BsmFI	GGGAC	5 cut(s)	440, 521, 581, 641, 748
BsmI	GAATGC	1 cut(s)	144
BsnI	GGCC	4 cut(s)	239, 251, 351, 765
Bsp120I	GGGCCC	1 cut(s)	237
Bsp1286I	GDGCHC	1 cut(s)	241
Bsp143I	GATC	8 cut(s)	28, 59, 64, 84, 124, 339, 394, 769
BspACI	CCGC	4 cut(s)	7, 392, 648, 651
BspANI	GGCC	4 cut(s)	239, 251, 351, 765
BspFNI	CGCG	1 cut(s)	7
BspLI	GGNNCC	4 cut(s)	30, 168, 239, 396
BspMI	ACCTGC	2 cut(s)	88, 168
BspPI	GGATC	6 cut(s)	23, 36, 54, 92, 389, 402
BspT107I	GGYRCC	1 cut(s)	166
BsrDI	GCAATG	1 cut(s)	172
BsrFI	RCCGGY	2 cut(s)	14, 142
BssAI	RCCGGY	2 cut(s)	14, 142
BssMI	GATC	8 cut(s)	28, 59, 64, 84, 124, 339, 394, 769
BssNAI	GTATAC	1 cut(s)	498
BssNI	GRCGYC	2 cut(s)	376, 737
Bst1107I	GTATAC	1 cut(s)	498
Bst2UI	CCWGG	1 cut(s)	82
Bst4CI	ACNGT	2 cut(s)	289, 502
Bst6I	CTCTTC	1 cut(s)	359
BstACI	GRCGYC	2 cut(s)	376, 737
BstC8I	GCNNGC	3 cut(s)	113, 144, 555
BstF5I	GGATG	2 cut(s)	496, 721
BstFNI	CGCG	1 cut(s)	7
BstHHI	GCGC	1 cut(s)	97
BstKTI	GATC	8 cut(s)	31, 62, 67, 87, 127, 342, 397, 772
BstMAI	GTCTC	1 cut(s)	694
BstMBI	GATC	8 cut(s)	28, 59, 64, 84, 124, 339, 394, 769
BstMWI	GCNNNNNNNGC	1 cut(s)	762
BstNI	CCWGG	1 cut(s)	82
BstSCI	CCNGG	2 cut(s)	80, 368
BstSLI	GKGCMC	1 cut(s)	241
BstUI	CGCG	1 cut(s)	7
BstV1I	GCAGC	2 cut(s)	562, 591
BstX2I	RGATCY	3 cut(s)	28, 59, 394
BstYI	RGATCY	3 cut(s)	28, 59, 394
BstZ17I	GTATAC	1 cut(s)	498
BsuRI	GGCC	4 cut(s)	239, 251, 351, 765
BtrI	CACGTC	2 cut(s)	589, 631
BtsCI	GGATG	2 cut(s)	496, 721
BtsI	GCAGTG	2 cut(s)	122, 153
BtsIMutI	CAGTG	3 cut(s)	122, 153, 507
BveI	ACCTGC	2 cut(s)	88, 168
Cac8I	GCNNGC	3 cut(s)	113, 144, 555
CfoI	GCGC	1 cut(s)	97
Cfr10I	RCCGGY	2 cut(s)	14, 142
Cfr13I	GGNCC	3 cut(s)	237, 238, 763
CseI	GACGC	2 cut(s)	365, 745
Csp6I	GTAC	1 cut(s)	360
CspCI	CAANNNNNGTGG	2 cut(s)	181, 216
CviAII	CATG	2 cut(s)	529, 744
CviQI	GTAC	1 cut(s)	360
DpnI	GATC	8 cut(s)	30, 61, 66, 86, 126, 341, 396, 771
DpnII	GATC	8 cut(s)	28, 59, 64, 84, 124, 339, 394, 769
DrdI	GACNNNNNNGTC	1 cut(s)	593
DseDI	GACNNNNNNGTC	1 cut(s)	593
Eam1104I	CTCTTC	1 cut(s)	359
EarI	CTCTTC	1 cut(s)	359
EciI	GGCGGA	1 cut(s)	666
Eco147I	AGGCCT	1 cut(s)	351
Eco24I	GRGCYC	1 cut(s)	241
Eco57I	CTGAAG	2 cut(s)	300, 340
EcoO109I	RGGNCCY	2 cut(s)	238, 763
EcoRII	CCWGG	1 cut(s)	80
EcoT38I	GRGCYC	1 cut(s)	241
FaeI	CATG	2 cut(s)	532, 747
FalI	AAGNNNNNCTT	2 cut(s)	687, 719
FaqI	GGGAC	5 cut(s)	440, 521, 581, 641, 748
FatI	CATG	2 cut(s)	528, 743
FauNDI	CATATG	1 cut(s)	246
FbaI	TGATCA	1 cut(s)	769
FblI	GTMKAC	1 cut(s)	497
Fnu4HI	GCNGC	3 cut(s)	551, 605, 649
FokI	GGATG	2 cut(s)	503, 728
FriOI	GRGCYC	1 cut(s)	241
Fsp4HI	GCNGC	3 cut(s)	551, 605, 649
GlaI	GCGC	1 cut(s)	96
GluI	GCNGC	3 cut(s)	551, 605, 649
GsaI	CCCAGC	1 cut(s)	306
HaeIII	GGCC	4 cut(s)	239, 251, 351, 765
HapII	CCGG	3 cut(s)	15, 143, 369
HgaI	GACGC	2 cut(s)	365, 745
HhaI	GCGC	1 cut(s)	97
Hin1I	GRCGYC	2 cut(s)	376, 737
Hin1II	CATG	2 cut(s)	532, 747
Hin6I	GCGC	1 cut(s)	95
HinP1I	GCGC	1 cut(s)	95
HincII	GTYRAC	1 cut(s)	586
HindII	GTYRAC	1 cut(s)	586
HinfI	GANTC	2 cut(s)	77, 407
HpaII	CCGG	3 cut(s)	15, 143, 369
HphI	GGTGA	3 cut(s)	101, 517, 764
Hpy166II	GTNNAC	4 cut(s)	20, 498, 586, 643
Hpy188I	TCNGA	4 cut(s)	64, 129, 319, 339
Hpy188III	TCNNGA	5 cut(s)	26, 398, 461, 483, 683
Hpy8I	GTNNAC	4 cut(s)	20, 498, 586, 643
Hpy99I	CGWCG	1 cut(s)	381
HpyAV	CCTTC	3 cut(s)	480, 750, 754
HpyCH4III	ACNGT	2 cut(s)	289, 502
HpyCH4IV	ACGT	2 cut(s)	588, 630
HpyCH4V	TGCA	4 cut(s)	177, 244, 404, 665
HpyF10VI	GCNNNNNNNGC	1 cut(s)	762
HpySE526I	ACGT	2 cut(s)	588, 630
Hsp92I	GRCGYC	2 cut(s)	376, 737
Hsp92II	CATG	2 cut(s)	532, 747
HspAI	GCGC	1 cut(s)	95
KroI	GCCGGC	1 cut(s)	142
KroNI	GCCGGC	1 cut(s)	144
Ksp22I	TGATCA	1 cut(s)	769
Kzo9I	GATC	8 cut(s)	28, 59, 64, 84, 124, 339, 394, 769
LmnI	GCTCC	2 cut(s)	120, 151
Lsp1109I	GCAGC	2 cut(s)	562, 591
LweI	GCATC	2 cut(s)	391, 481
MaeII	ACGT	2 cut(s)	588, 630
MaeIII	GTNAC	1 cut(s)	631
MalI	GATC	8 cut(s)	30, 61, 66, 86, 126, 341, 396, 771
MboI	GATC	8 cut(s)	28, 59, 64, 84, 124, 339, 394, 769
MboII	GAAGA	3 cut(s)	346, 431, 578
MflI	RGATCY	3 cut(s)	28, 59, 394
MhlI	GDGCHC	1 cut(s)	241
MluCI	AATT	3 cut(s)	227, 344, 678
MmeI	TCCRAC	2 cut(s)	362, 549
MnlI	CCTC	7 cut(s)	85, 208, 308, 362, 366, 468, 549
MroNI	GCCGGC	1 cut(s)	142
MseI	TTAA	3 cut(s)	365, 576, 705
MspA1I	CMGCKG	1 cut(s)	648
MspI	CCGG	3 cut(s)	15, 143, 369
MspR9I	CCNGG	2 cut(s)	82, 370
Mva1269I	GAATGC	1 cut(s)	144
MvaI	CCWGG	1 cut(s)	82
MvnI	CGCG	1 cut(s)	7
MwoI	GCNNNNNNNGC	1 cut(s)	762
NaeI	GCCGGC	1 cut(s)	144
NciI	CCSGG	1 cut(s)	370
NdeI	CATATG	1 cut(s)	246
NdeII	GATC	8 cut(s)	28, 59, 64, 84, 124, 339, 394, 769
NgoMIV	GCCGGC	1 cut(s)	142
NlaIII	CATG	2 cut(s)	532, 747
NlaIV	GGNNCC	4 cut(s)	30, 168, 239, 396
NmuCI	GTSAC	1 cut(s)	631
PaqCI	CACCTGC	1 cut(s)	168
PceI	AGGCCT	1 cut(s)	351
PctI	GAATGC	1 cut(s)	144
PdiI	GCCGGC	1 cut(s)	144
PfeI	GAWTC	2 cut(s)	77, 407
PfoI	TCCNGGA	1 cut(s)	80
PkrI	GCNGC	3 cut(s)	552, 606, 650
PsiI	TTATAA	1 cut(s)	434
Psp6I	CCWGG	1 cut(s)	80
PspFI	CCCAGC	1 cut(s)	302
PspGI	CCWGG	1 cut(s)	80
PspN4I	GGNNCC	4 cut(s)	30, 168, 239, 396
PspOMI	GGGCCC	1 cut(s)	237
PspPI	GGNCC	3 cut(s)	237, 238, 763
PsuI	RGATCY	3 cut(s)	28, 59, 394
RsaI	GTAC	1 cut(s)	361
RsaNI	GTAC	1 cut(s)	360
SaqAI	TTAA	3 cut(s)	365, 576, 705
SatI	GCNGC	3 cut(s)	551, 605, 649
Sau3AI	GATC	8 cut(s)	28, 59, 64, 84, 124, 339, 394, 769
Sau96I	GGNCC	3 cut(s)	237, 238, 763
ScrFI	CCNGG	2 cut(s)	82, 370
SduI	GDGCHC	1 cut(s)	241
SfaNI	GCATC	2 cut(s)	391, 481
SgrAI	CRCCGGYG	1 cut(s)	14
Sse9I	AATT	3 cut(s)	227, 344, 678
SseBI	AGGCCT	1 cut(s)	351
SsiI	CCGC	4 cut(s)	7, 392, 648, 651
SspI	AATATT	1 cut(s)	573
StuI	AGGCCT	1 cut(s)	351
StyD4I	CCNGG	2 cut(s)	80, 368
TaaI	ACNGT	2 cut(s)	289, 502
TaiI	ACGT	2 cut(s)	591, 633
TaqI	TCGA	2 cut(s)	462, 484
TasI	AATT	3 cut(s)	227, 344, 678
TatI	WGTACW	1 cut(s)	359
TauI	GCSGC	1 cut(s)	651
TfiI	GAWTC	2 cut(s)	77, 407
Tru1I	TTAA	3 cut(s)	365, 576, 705
Tru9I	TTAA	3 cut(s)	365, 576, 705
TscAI	CASTG	3 cut(s)	122, 153, 507
TseFI	GTSAC	1 cut(s)	631
TseI	GCWGC	2 cut(s)	550, 604
Tsp45I	GTSAC	1 cut(s)	631
TspDTI	ATGAA	3 cut(s)	432, 732, 732
TspGWI	ACGGA	1 cut(s)	336
TspRI	CASTG	3 cut(s)	122, 153, 507
XmiI	GTMKAC	1 cut(s)	497

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.