Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5D

Orthogroup ID

OG0010552

Physical Location & Seq

Genomic Coordinates Forward (+)

87374843 .. 87376669

Gene Structure 1827 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5DG566300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 858 bp

ATGGACATGTCCACCCTGCAACCATTATATTATTGCAATGCAGTACAATTTTCTGGGGTTGCTCAAGAAGGTAAGAGACTTTGGATCAGAGCAAGAACTGCACCGATACATTATAGGCTCTTCAAGCTAATTCATAGCTGTCGTCGTTGGATTGACCCGTCCGGCGTGGACATGGTTCCGATCAGAATAAAACTCTACCAGCAAACAGTAACTGTCCGCTGGGATGAGTTTTGTAGAGGCCTTTGTTTTGATGAACCAAAATGGGTAACTGAAAGACGATTTATTGTCCCTGTCTCTGATTTCAAGGCATTATCGAAAATGGGTGGTTATAGAAAGATTGTGGCCGGGTATCTTTCCAGCATGCGCGTCCCAGGAGATGAGCAGGAAGCTATTATTCAAGAAATATTTTGGGCGATTTATCATGCCGTCCCTGAATTTCCCATTATTGTGAGGATACTGCAGTCGACTCTGCAAGCAGCGGACAATGCAATTACATCATATATTGAGGGTTTGGAGAGAGTGAGAGTTGATAGTTTGGAGGAAGCTAATAGACATACAACTTGCGCTATTTGTAGGGAGGACCTTGATCACTTTGAAGGGATTGATAATGATGAGCAGAAGATTATTCGCTTGCCCTGCTTGCACCTTTATCATGGAGATTGCATTGTCCCTTGGCTGGAGAGGTGTCTGGACTGCCCCTTGTGTCGACAGTTTATGCCTTTTCTTATGCCTACTGTGCAAGAGGCTAATTCATCATCAAAACGCTCAGGCCTACTGCGTTGGCCTACGCTGCTCATGATGTCTGCTGGCGGTATAATAACTGCTACGCTTCTGTGCAGATTATTGAAGCGAACATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-RING_2 zf-rbx1

Protein Analysis

285

Amino Acids

32.96

Weight (kDa)

8.24

Isoelectric Point (pI)

58.66

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-RING_2	PF13639	187 - 236	1.6e-08	Ring finger domain
zf-rbx1	PF12678	187 - 236	2.7e-07	RING-H2 zinc finger domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0010552)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g45030 FvH4_5g04570 FvH4_5g05561 FvH4_5g05590 FvH4_5g09840 FvH4_5g09840 FvH4_6g41381 FvH4_6g41383
rosa_chinensis	RchiOBHm_Chr5g0082881
rosa_multiflora	Rmu_co8151450.1_g000001 Rmu_sc0001381.1_g000010 Rmu_sc0023803.1_g000002
rosa_roxburghii	Rroxscaffold_1G00001560
rosa_rugosa	Rorug05G0480600 Rorug05G0480800 Rorug07G0017100
rosa_samantha	Rh1DG078100 Rh5AG531000 Rh5DG566300
rosa_wichuraiana	Rw5G049770 Rw7G012350

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	2 cut(s)	464, 706
AccII	CGCG	1 cut(s)	366
AciI	CCGC	3 cut(s)	217, 479, 810
AclWI	GGATC	1 cut(s)	92
AcoI	YGGCCR	1 cut(s)	342
AcsI	RAATTY	1 cut(s)	434
AfaI	GTAC	1 cut(s)	45
AfiI	CCNNNNNNNGG	1 cut(s)	676
AflIII	ACRYGT	1 cut(s)	6
AgsI	TTSAA	5 cut(s)	124, 304, 398, 596, 847
AjnI	CCWGG	1 cut(s)	370
AluBI	AGCT	4 cut(s)	127, 138, 389, 545
AluI	AGCT	4 cut(s)	127, 138, 389, 545
Alw26I	GTCTC	2 cut(s)	70, 298
AlwI	GGATC	1 cut(s)	92
AlwNI	CAGNNNCTG	1 cut(s)	212
AoxI	GGCC	4 cut(s)	238, 342, 769, 782
ApeKI	GCWGC	2 cut(s)	476, 790
ApoI	RAATTY	1 cut(s)	434
AspLEI	GCGC	2 cut(s)	366, 566
AspS9I	GGNCC	1 cut(s)	580
AsuC2I	CCSGG	1 cut(s)	346
AvaII	GGWCC	1 cut(s)	580
BaeI	ACNNNNGTAYC	2 cut(s)	446, 479
BbvI	GCAGC	2 cut(s)	488, 777
BceAI	ACGGC	1 cut(s)	410
BciT130I	CCWGG	1 cut(s)	372
BciVI	GTATCC	1 cut(s)	447
BclI	TGATCA	1 cut(s)	586
BcnI	CCSGG	1 cut(s)	346
BcoDI	GTCTC	2 cut(s)	70, 298
BfmI	CTRYAG	1 cut(s)	458
BfuI	GTATCC	1 cut(s)	447
BisI	GCNGC	2 cut(s)	477, 791
BlsI	GCNGC	2 cut(s)	478, 792
Bme1390I	CCNGG	2 cut(s)	346, 372
Bme18I	GGWCC	1 cut(s)	580
BmgT120I	GGNCC	1 cut(s)	580
BmiI	GGNNCC	1 cut(s)	177
BmrFI	CCNGG	2 cut(s)	346, 372
BpmI	CTGGAG	1 cut(s)	698
Bpu10I	CCTNAGC	1 cut(s)	766
BpuEI	CTTGAG	1 cut(s)	48
BpuMI	CCSGG	1 cut(s)	346
BsaJI	CCNNGG	2 cut(s)	370, 671
Bsc4I	CCNNNNNNNGG	1 cut(s)	676
Bse3DI	GCAATG	1 cut(s)	43
BseBI	CCWGG	1 cut(s)	372
BseDI	CCNNGG	2 cut(s)	370, 671
BseGI	GGATG	1 cut(s)	229
BseLI	CCNNNNNNNGG	1 cut(s)	676
BseMI	GCAATG	1 cut(s)	43
BseMII	CTCAG	1 cut(s)	780
BseXI	GCAGC	2 cut(s)	488, 777
BseYI	CCCAGC	1 cut(s)	219
BsgI	GTGCAG	2 cut(s)	84, 856
Bsh1236I	CGCG	1 cut(s)	366
BshFI	GGCC	4 cut(s)	240, 344, 771, 784
BsiSI	CCGG	2 cut(s)	162, 345
BslFI	GGGAC	4 cut(s)	272, 353, 413, 653
BslI	CCNNNNNNNGG	1 cut(s)	676
BsmAI	GTCTC	2 cut(s)	70, 298
BsmFI	GGGAC	4 cut(s)	272, 353, 413, 653
BsnI	GGCC	4 cut(s)	240, 344, 771, 784
Bsp143I	GATC	3 cut(s)	84, 180, 586
BspACI	CCGC	3 cut(s)	217, 479, 810
BspANI	GGCC	4 cut(s)	240, 344, 771, 784
BspCNI	CTCAG	1 cut(s)	779
BspFNI	CGCG	1 cut(s)	366
BspHI	TCATGA	1 cut(s)	795
BspLI	GGNNCC	1 cut(s)	177
BspMAI	CTGCAG	1 cut(s)	462
BspPI	GGATC	1 cut(s)	92
BspQI	GCTCTTC	1 cut(s)	125
BsrDI	GCAATG	1 cut(s)	43
BssECI	CCNNGG	2 cut(s)	370, 671
BssMI	GATC	3 cut(s)	84, 180, 586
BssT1I	CCWWGG	1 cut(s)	671
Bst2UI	CCWGG	1 cut(s)	372
Bst4CI	ACNGT	4 cut(s)	208, 214, 711, 736
Bst6I	CTCTTC	1 cut(s)	125
BstAPI	GCANNNNNTGC	1 cut(s)	98
BstC8I	GCNNGC	5 cut(s)	362, 474, 632, 641, 808
BstDEI	CTNAG	1 cut(s)	766
BstF5I	GGATG	1 cut(s)	229
BstFNI	CGCG	1 cut(s)	366
BstHHI	GCGC	2 cut(s)	366, 566
BstKTI	GATC	3 cut(s)	87, 183, 589
BstMAI	GTCTC	2 cut(s)	70, 298
BstMBI	GATC	3 cut(s)	84, 180, 586
BstMWI	GCNNNNNNNGC	7 cut(s)	98, 124, 485, 636, 640, 736, 790
BstNI	CCWGG	1 cut(s)	372
BstNSI	RCATGY	2 cut(s)	10, 364
BstSCI	CCNGG	2 cut(s)	344, 370
BstSFI	CTRYAG	1 cut(s)	458
BstUI	CGCG	1 cut(s)	366
BstV1I	GCAGC	2 cut(s)	488, 777
BsuI	GTATCC	1 cut(s)	447
BsuRI	GGCC	4 cut(s)	240, 344, 771, 784
BtsCI	GGATG	1 cut(s)	229
Cac8I	GCNNGC	5 cut(s)	362, 474, 632, 641, 808
CaiI	CAGNNNCTG	1 cut(s)	212
CciI	TCATGA	1 cut(s)	795
CfoI	GCGC	2 cut(s)	366, 566
Cfr13I	GGNCC	1 cut(s)	580
CseI	GACGC	1 cut(s)	355
Csp6I	GTAC	1 cut(s)	44
CviAII	CATG	7 cut(s)	7, 172, 361, 422, 653, 796, 855
CviQI	GTAC	1 cut(s)	44
DdeI	CTNAG	1 cut(s)	766
DpnI	GATC	3 cut(s)	86, 182, 588
DpnII	GATC	3 cut(s)	84, 180, 586
EaeI	YGGCCR	1 cut(s)	342
Eam1104I	CTCTTC	1 cut(s)	125
EarI	CTCTTC	1 cut(s)	125
Eco130I	CCWWGG	1 cut(s)	671
Eco147I	AGGCCT	2 cut(s)	240, 771
Eco47I	GGWCC	1 cut(s)	580
EcoO109I	RGGNCCY	1 cut(s)	580
EcoRII	CCWGG	1 cut(s)	370
EcoT14I	CCWWGG	1 cut(s)	671
ErhI	CCWWGG	1 cut(s)	671
FaeI	CATG	7 cut(s)	10, 175, 364, 425, 656, 799, 858
FaqI	GGGAC	4 cut(s)	272, 353, 413, 653
FatI	CATG	7 cut(s)	6, 171, 360, 421, 652, 795, 854
FbaI	TGATCA	1 cut(s)	586
FblI	GTMKAC	2 cut(s)	464, 706
Fnu4HI	GCNGC	2 cut(s)	477, 791
FokI	GGATG	1 cut(s)	236
Fsp4HI	GCNGC	2 cut(s)	477, 791
GlaI	GCGC	2 cut(s)	365, 565
GluI	GCNGC	2 cut(s)	477, 791
GsaI	CCCAGC	1 cut(s)	223
GsuI	CTGGAG	1 cut(s)	698
HaeIII	GGCC	4 cut(s)	240, 344, 771, 784
HapII	CCGG	2 cut(s)	162, 345
HgaI	GACGC	1 cut(s)	355
HhaI	GCGC	2 cut(s)	366, 566
Hin1II	CATG	7 cut(s)	10, 175, 364, 425, 656, 799, 858
Hin6I	GCGC	2 cut(s)	364, 564
HinP1I	GCGC	2 cut(s)	364, 564
HincII	GTYRAC	2 cut(s)	465, 707
HindII	GTYRAC	2 cut(s)	465, 707
HinfI	GANTC	1 cut(s)	466
HpaII	CCGG	2 cut(s)	162, 345
Hpy166II	GTNNAC	4 cut(s)	12, 169, 465, 707
Hpy188I	TCNGA	4 cut(s)	89, 180, 185, 298
Hpy188III	TCNNGA	4 cut(s)	65, 398, 689, 796
Hpy8I	GTNNAC	4 cut(s)	12, 169, 465, 707
Hpy99I	CGWCG	1 cut(s)	147
HpyAV	CCTTC	2 cut(s)	62, 590
HpyCH4III	ACNGT	4 cut(s)	208, 214, 711, 736
HpyF10VI	GCNNNNNNNGC	7 cut(s)	98, 124, 485, 636, 640, 736, 790
HpyF3I	CTNAG	1 cut(s)	766
Hsp92II	CATG	7 cut(s)	10, 175, 364, 425, 656, 799, 858
HspAI	GCGC	2 cut(s)	364, 564
Ksp22I	TGATCA	1 cut(s)	586
Kzo9I	GATC	3 cut(s)	84, 180, 586
LguI	GCTCTTC	1 cut(s)	125
Lsp1109I	GCAGC	2 cut(s)	488, 777
MaeIII	GTNAC	2 cut(s)	208, 265
MalI	GATC	3 cut(s)	86, 182, 588
MboI	GATC	3 cut(s)	84, 180, 586
MboII	GAAGA	2 cut(s)	112, 631
MluCI	AATT	5 cut(s)	47, 129, 434, 489, 748
MlyI	GAGTC	1 cut(s)	460
MmeI	TCCRAC	1 cut(s)	128
MnlI	CCTC	7 cut(s)	230, 444, 499, 532, 571, 675, 736
MslI	CAYNNNNRTG	1 cut(s)	446
MspA1I	CMGCKG	2 cut(s)	219, 479
MspI	CCGG	2 cut(s)	162, 345
MspR9I	CCNGG	2 cut(s)	346, 372
MvaI	CCWGG	1 cut(s)	372
MvnI	CGCG	1 cut(s)	366
MwoI	GCNNNNNNNGC	7 cut(s)	98, 124, 485, 636, 640, 736, 790
NciI	CCSGG	1 cut(s)	346
NdeII	GATC	3 cut(s)	84, 180, 586
NlaIII	CATG	7 cut(s)	10, 175, 364, 425, 656, 799, 858
NlaIV	GGNNCC	1 cut(s)	177
NspI	RCATGY	2 cut(s)	10, 364
PaeI	GCATGC	1 cut(s)	364
PagI	TCATGA	1 cut(s)	795
PceI	AGGCCT	2 cut(s)	240, 771
PciI	ACATGT	1 cut(s)	6
PciSI	GCTCTTC	1 cut(s)	125
PkrI	GCNGC	2 cut(s)	478, 792
PleI	GAGTC	1 cut(s)	460
PpsI	GAGTC	1 cut(s)	460
PpuMI	RGGWCCY	1 cut(s)	580
PscI	ACATGT	1 cut(s)	6
Psp5II	RGGWCCY	1 cut(s)	580
Psp6I	CCWGG	1 cut(s)	370
PspFI	CCCAGC	1 cut(s)	219
PspGI	CCWGG	1 cut(s)	370
PspN4I	GGNNCC	1 cut(s)	177
PspPI	GGNCC	1 cut(s)	580
PspPPI	RGGWCCY	1 cut(s)	580
PstI	CTGCAG	1 cut(s)	462
PstNI	CAGNNNCTG	1 cut(s)	212
RsaI	GTAC	1 cut(s)	45
RsaNI	GTAC	1 cut(s)	44
RseI	CAYNNNNRTG	1 cut(s)	446
SalI	GTCGAC	2 cut(s)	463, 705
SapI	GCTCTTC	1 cut(s)	125
SatI	GCNGC	2 cut(s)	477, 791
Sau3AI	GATC	3 cut(s)	84, 180, 586
Sau96I	GGNCC	1 cut(s)	580
SchI	GAGTC	1 cut(s)	460
ScrFI	CCNGG	2 cut(s)	346, 372
SetI	ASST	8 cut(s)	73, 129, 140, 391, 547, 585, 648, 686
SfcI	CTRYAG	1 cut(s)	458
SinI	GGWCC	1 cut(s)	580
SmiMI	CAYNNNNRTG	1 cut(s)	446
SmlI	CTYRAG	1 cut(s)	63
SmoI	CTYRAG	1 cut(s)	63
SphI	GCATGC	1 cut(s)	364
Sse9I	AATT	5 cut(s)	47, 129, 434, 489, 748
SseBI	AGGCCT	2 cut(s)	240, 771
SsiI	CCGC	3 cut(s)	217, 479, 810
SspI	AATATT	1 cut(s)	405
StuI	AGGCCT	2 cut(s)	240, 771
StyD4I	CCNGG	2 cut(s)	344, 370
StyI	CCWWGG	1 cut(s)	671
TaaI	ACNGT	4 cut(s)	208, 214, 711, 736
TaqI	TCGA	3 cut(s)	314, 464, 706
TasI	AATT	5 cut(s)	47, 129, 434, 489, 748
TatI	WGTACW	1 cut(s)	43
TseI	GCWGC	2 cut(s)	476, 790
TspDTI	ATGAA	3 cut(s)	122, 267, 741
VpaK11BI	GGWCC	1 cut(s)	580
XapI	RAATTY	1 cut(s)	434
XceI	RCATGY	2 cut(s)	10, 364
XmiI	GTMKAC	2 cut(s)	464, 706

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.