Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5A

Orthogroup ID

OG0010552

Physical Location & Seq

Genomic Coordinates Forward (+)

91263344 .. 91266048

Gene Structure 2705 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5AG531000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 588 bp

ATGGGTGGTTATGGAAAGATTGTGGCCGGGTATCTTTCCAGCATGCGCGTCCCAGAAGATGAGCAGGAAGCTATTATTCAAGAAATATTTTGGGCAATTTATCATGCCGTCCCTGAATTTCCCATTATAGTGAGGATACAGCAGTTGACTCTGCAAGCAGCGAACAATGCAATTACATCATATATTGAGGGTTTGGGGAGAGTGAGAGTTGATAGTTTGGAGGAAGCTAATAGACATGCAGCTTGCGCTATTTGTAGGGAGGACCTTGATCACTTTGAAGGGATTGATAATGATGAGCAGAAGATTATTCGCTTGCCCTGCTTGCACCTTTATCATGGAGATTGCATTGTCCCTTGGCTGGAGAGGTGTCTGGACTGCCCCTTGTGTCGACAGTTTATGCCTTTTCTTATGCCTATTATGCAAGAGGCTAATTCATCATCAAAACCCTCAGGCCTACTGCGTTGGCCTACGCTGCTCATGCACATCTTGCATAGCCGCCTCTGCTGTTTATATAACTTACCATTGACCTTGTATTTGGCTGTTCAATTATTTTCCTTCAGTGTTTCAATTGTTTCTTTTCTTTTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-RING_2 zf-rbx1

Protein Analysis

195

Amino Acids

22.27

Weight (kDa)

5.43

Isoelectric Point (pI)

54.9

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-RING_2	PF13639	81 - 130	1.1e-08	Ring finger domain
zf-rbx1	PF12678	81 - 130	4.8e-07	RING-H2 zinc finger domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0010552)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g45030 FvH4_5g04570 FvH4_5g05561 FvH4_5g05590 FvH4_5g09840 FvH4_5g09840 FvH4_6g41381 FvH4_6g41383
rosa_chinensis	RchiOBHm_Chr5g0082881
rosa_multiflora	Rmu_co8151450.1_g000001 Rmu_sc0001381.1_g000010 Rmu_sc0023803.1_g000002
rosa_roxburghii	Rroxscaffold_1G00001560
rosa_rugosa	Rorug05G0480600 Rorug05G0480800 Rorug07G0017100
rosa_samantha	Rh1DG078100 Rh5AG531000 Rh5DG566300
rosa_wichuraiana	Rw5G049770 Rw7G012350

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	388
AccII	CGCG	1 cut(s)	48
AciI	CCGC	1 cut(s)	496
AcoI	YGGCCR	1 cut(s)	24
AcsI	RAATTY	1 cut(s)	116
AcuI	CTGAAG	1 cut(s)	541
AfiI	CCNNNNNNNGG	1 cut(s)	358
AgsI	TTSAA	4 cut(s)	80, 278, 545, 567
AluBI	AGCT	3 cut(s)	71, 227, 242
AluI	AGCT	3 cut(s)	71, 227, 242
AoxI	GGCC	3 cut(s)	24, 451, 464
ApeKI	GCWGC	3 cut(s)	158, 239, 472
ApoI	RAATTY	1 cut(s)	116
ArsI	GACNNNNNNTTYG	2 cut(s)	517, 549
AspLEI	GCGC	2 cut(s)	48, 248
AspS9I	GGNCC	1 cut(s)	262
AsuC2I	CCSGG	1 cut(s)	28
AvaII	GGWCC	1 cut(s)	262
AxyI	CCTNAGG	1 cut(s)	448
BaeI	ACNNNNGTAYC	2 cut(s)	128, 161
BbvI	GCAGC	3 cut(s)	170, 251, 459
BceAI	ACGGC	1 cut(s)	92
BciVI	GTATCC	1 cut(s)	129
BclI	TGATCA	1 cut(s)	268
BcnI	CCSGG	1 cut(s)	28
BfuI	GTATCC	1 cut(s)	129
BisI	GCNGC	4 cut(s)	159, 240, 473, 496
BlsI	GCNGC	4 cut(s)	160, 241, 474, 497
Bme1390I	CCNGG	1 cut(s)	28
Bme18I	GGWCC	1 cut(s)	262
BmgT120I	GGNCC	1 cut(s)	262
BmrFI	CCNGG	1 cut(s)	28
BpmI	CTGGAG	1 cut(s)	380
BpuMI	CCSGG	1 cut(s)	28
BsaJI	CCNNGG	1 cut(s)	353
Bsc4I	CCNNNNNNNGG	1 cut(s)	358
Bse21I	CCTNAGG	1 cut(s)	448
BseDI	CCNNGG	1 cut(s)	353
BseLI	CCNNNNNNNGG	1 cut(s)	358
BseMII	CTCAG	1 cut(s)	462
BseXI	GCAGC	3 cut(s)	170, 251, 459
Bsh1236I	CGCG	1 cut(s)	48
BshFI	GGCC	3 cut(s)	26, 453, 466
BsiSI	CCGG	1 cut(s)	27
BslFI	GGGAC	3 cut(s)	35, 95, 335
BslI	CCNNNNNNNGG	1 cut(s)	358
BsmFI	GGGAC	3 cut(s)	35, 95, 335
BsnI	GGCC	3 cut(s)	26, 453, 466
Bsp143I	GATC	1 cut(s)	268
BspACI	CCGC	1 cut(s)	496
BspANI	GGCC	3 cut(s)	26, 453, 466
BspCNI	CTCAG	1 cut(s)	461
BspFNI	CGCG	1 cut(s)	48
BssECI	CCNNGG	1 cut(s)	353
BssMI	GATC	1 cut(s)	268
BssT1I	CCWWGG	1 cut(s)	353
Bst4CI	ACNGT	1 cut(s)	393
BstAPI	GCANNNNNTGC	1 cut(s)	487
BstC8I	GCNNGC	5 cut(s)	44, 156, 244, 314, 323
BstDEI	CTNAG	1 cut(s)	448
BstFNI	CGCG	1 cut(s)	48
BstHHI	GCGC	2 cut(s)	48, 248
BstKTI	GATC	1 cut(s)	271
BstMBI	GATC	1 cut(s)	268
BstMWI	GCNNNNNNNGC	9 cut(s)	167, 245, 318, 322, 418, 472, 478, 487, 501
BstNSI	RCATGY	2 cut(s)	46, 239
BstSCI	CCNGG	1 cut(s)	26
BstUI	CGCG	1 cut(s)	48
BstV1I	GCAGC	3 cut(s)	170, 251, 459
Bsu36I	CCTNAGG	1 cut(s)	448
BsuI	GTATCC	1 cut(s)	129
BsuRI	GGCC	3 cut(s)	26, 453, 466
BtsIMutI	CAGTG	1 cut(s)	565
Cac8I	GCNNGC	5 cut(s)	44, 156, 244, 314, 323
CfoI	GCGC	2 cut(s)	48, 248
Cfr13I	GGNCC	1 cut(s)	262
CseI	GACGC	1 cut(s)	37
CviAII	CATG	5 cut(s)	43, 104, 236, 335, 478
DdeI	CTNAG	1 cut(s)	448
DpnI	GATC	1 cut(s)	270
DpnII	GATC	1 cut(s)	268
EaeI	YGGCCR	1 cut(s)	24
Eco130I	CCWWGG	1 cut(s)	353
Eco147I	AGGCCT	1 cut(s)	453
Eco47I	GGWCC	1 cut(s)	262
Eco57I	CTGAAG	1 cut(s)	541
Eco81I	CCTNAGG	1 cut(s)	448
EcoO109I	RGGNCCY	1 cut(s)	262
EcoT14I	CCWWGG	1 cut(s)	353
ErhI	CCWWGG	1 cut(s)	353
FaeI	CATG	5 cut(s)	46, 107, 239, 338, 481
FaqI	GGGAC	3 cut(s)	35, 95, 335
FatI	CATG	5 cut(s)	42, 103, 235, 334, 477
FbaI	TGATCA	1 cut(s)	268
FblI	GTMKAC	1 cut(s)	388
Fnu4HI	GCNGC	4 cut(s)	159, 240, 473, 496
Fsp4HI	GCNGC	4 cut(s)	159, 240, 473, 496
GlaI	GCGC	2 cut(s)	47, 247
GluI	GCNGC	4 cut(s)	159, 240, 473, 496
GsuI	CTGGAG	1 cut(s)	380
HaeIII	GGCC	3 cut(s)	26, 453, 466
HapII	CCGG	1 cut(s)	27
HgaI	GACGC	1 cut(s)	37
HhaI	GCGC	2 cut(s)	48, 248
Hin1II	CATG	5 cut(s)	46, 107, 239, 338, 481
Hin6I	GCGC	2 cut(s)	46, 246
HinP1I	GCGC	2 cut(s)	46, 246
HincII	GTYRAC	2 cut(s)	147, 389
HindII	GTYRAC	2 cut(s)	147, 389
HinfI	GANTC	1 cut(s)	148
HpaII	CCGG	1 cut(s)	27
Hpy166II	GTNNAC	2 cut(s)	147, 389
Hpy188III	TCNNGA	2 cut(s)	80, 371
Hpy8I	GTNNAC	2 cut(s)	147, 389
HpyAV	CCTTC	2 cut(s)	272, 565
HpyCH4III	ACNGT	1 cut(s)	393
HpyCH4V	TGCA	8 cut(s)	154, 170, 239, 325, 345, 421, 481, 490
HpyF10VI	GCNNNNNNNGC	9 cut(s)	167, 245, 318, 322, 418, 472, 478, 487, 501
HpyF3I	CTNAG	1 cut(s)	448
Hsp92II	CATG	5 cut(s)	46, 107, 239, 338, 481
HspAI	GCGC	2 cut(s)	46, 246
Ksp22I	TGATCA	1 cut(s)	268
Kzo9I	GATC	1 cut(s)	268
LpnPI	CCDG	9 cut(s)	40, 50, 52, 66, 126, 331, 344, 356, 435
Lsp1109I	GCAGC	3 cut(s)	170, 251, 459
MalI	GATC	1 cut(s)	270
MboI	GATC	1 cut(s)	268
MboII	GAAGA	2 cut(s)	68, 313
MfeI	CAATTG	1 cut(s)	567
MluCI	AATT	6 cut(s)	96, 116, 171, 430, 545, 567
MlyI	GAGTC	1 cut(s)	142
MnlI	CCTC	8 cut(s)	126, 181, 214, 253, 357, 418, 457, 509
MseI	TTAA	1 cut(s)	586
MslI	CAYNNNNRTG	1 cut(s)	128
MspI	CCGG	1 cut(s)	27
MspR9I	CCNGG	1 cut(s)	28
MunI	CAATTG	1 cut(s)	567
MvnI	CGCG	1 cut(s)	48
MwoI	GCNNNNNNNGC	9 cut(s)	167, 245, 318, 322, 418, 472, 478, 487, 501
NciI	CCSGG	1 cut(s)	28
NdeII	GATC	1 cut(s)	268
NlaIII	CATG	5 cut(s)	46, 107, 239, 338, 481
NspI	RCATGY	2 cut(s)	46, 239
PaeI	GCATGC	1 cut(s)	46
PceI	AGGCCT	1 cut(s)	453
PkrI	GCNGC	4 cut(s)	160, 241, 474, 497
PleI	GAGTC	1 cut(s)	142
PpsI	GAGTC	1 cut(s)	142
PpuMI	RGGWCCY	1 cut(s)	262
Psp5II	RGGWCCY	1 cut(s)	262
PspPI	GGNCC	1 cut(s)	262
PspPPI	RGGWCCY	1 cut(s)	262
RseI	CAYNNNNRTG	1 cut(s)	128
SalI	GTCGAC	1 cut(s)	387
SaqAI	TTAA	1 cut(s)	586
SatI	GCNGC	4 cut(s)	159, 240, 473, 496
Sau3AI	GATC	1 cut(s)	268
Sau96I	GGNCC	1 cut(s)	262
SchI	GAGTC	1 cut(s)	142
ScrFI	CCNGG	1 cut(s)	28
SetI	ASST	7 cut(s)	73, 229, 244, 267, 330, 368, 530
SinI	GGWCC	1 cut(s)	262
SmiMI	CAYNNNNRTG	1 cut(s)	128
SphI	GCATGC	1 cut(s)	46
Sse9I	AATT	6 cut(s)	96, 116, 171, 430, 545, 567
SseBI	AGGCCT	1 cut(s)	453
SsiI	CCGC	1 cut(s)	496
SspI	AATATT	1 cut(s)	87
StuI	AGGCCT	1 cut(s)	453
StyD4I	CCNGG	1 cut(s)	26
StyI	CCWWGG	1 cut(s)	353
TaaI	ACNGT	1 cut(s)	393
TaqI	TCGA	1 cut(s)	388
TasI	AATT	6 cut(s)	96, 116, 171, 430, 545, 567
TauI	GCSGC	1 cut(s)	498
Tru1I	TTAA	1 cut(s)	586
Tru9I	TTAA	1 cut(s)	586
TscAI	CASTG	1 cut(s)	565
TseI	GCWGC	3 cut(s)	158, 239, 472
TspDTI	ATGAA	1 cut(s)	423
TspRI	CASTG	1 cut(s)	565
VpaK11BI	GGWCC	1 cut(s)	262
XapI	RAATTY	1 cut(s)	116
XceI	RCATGY	2 cut(s)	46, 239
XmiI	GTMKAC	1 cut(s)	388

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.