Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0001381.1

Orthogroup ID

OG0010552

Physical Location & Seq

Genomic Coordinates Reverse (-)

27285 .. 28136

Gene Structure 852 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0001381.1_g000010.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 852 bp

atgtccaccctggaaccattatattattgcaatgcagtacaattttctggggttgctcaagaaggtaggagactttggatcagagcaagaactgcaccgatacattataggctcctcaagctaattcatagctgtcgtcgttggattgacccgtccggcgtggacatggttccgatcagagtaaaactctaccagcaaacagtaactgtacgctgggatgagttttgtagaggccttagttttgatgaaccaaaatgggtaactgaaagacgatttattgtccccgtctctgatttcaaggaattatcgaaattgggtggttatagaaagattgtggccgggtatctttccagcatgcgcgtcccagaagatgagcaggaagctattattcaagaaatattttgggcaatttatcatgccgtccctggatttcccattattgtgaggatacagcagttgactctgcaagcagcgaacaatgcaattacatcatatattgagggtttggagagagtgagagttgatagtttggaggaagctaatagacatacaacttgcgctatttgtagggaggaccttgattactttgaagggattgataatgatgagcagatgattattcgcttgccctgcttgcacctttatcatggagattgcattgtcccttggctggagaggtgtctggactgccccttgtgtcgacagtttatgccttttcttatgcctattatgcaagaggctaattcatcatcaaaacccttaggccaactgcgttggcctacgctgctcatgatgtctgctggcggtataataactgctacgcttctgtgcagattattgaagcgaacttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-RING_2 zf-rbx1

Protein Analysis

283

Amino Acids

32.81

Weight (kDa)

7.52

Isoelectric Point (pI)

53.7

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010552)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g45030 FvH4_5g04570 FvH4_5g05561 FvH4_5g05590 FvH4_5g09840 FvH4_5g09840 FvH4_6g41381 FvH4_6g41383
rosa_chinensis	RchiOBHm_Chr5g0082881
rosa_multiflora	Rmu_co8151450.1_g000001 Rmu_sc0001381.1_g000010 Rmu_sc0023803.1_g000002
rosa_roxburghii	Rroxscaffold_1G00001560
rosa_rugosa	Rorug05G0480600 Rorug05G0480800 Rorug07G0017100
rosa_samantha	Rh1DG078100 Rh5AG531000 Rh5DG566300
rosa_wichuraiana	Rw5G049770 Rw7G012350

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	700
AccII	CGCG	1 cut(s)	360
AciI	CCGC	1 cut(s)	804
AclWI	GGATC	1 cut(s)	86
AcoI	YGGCCR	1 cut(s)	336
AfaI	GTAC	2 cut(s)	39, 210
AfiI	CCNNNNNNNGG	1 cut(s)	670
AgsI	TTSAA	4 cut(s)	298, 392, 590, 841
AjnI	CCWGG	2 cut(s)	9, 424
AluBI	AGCT	4 cut(s)	121, 132, 383, 539
AluI	AGCT	4 cut(s)	121, 132, 383, 539
Alw26I	GTCTC	2 cut(s)	64, 292
AlwI	GGATC	1 cut(s)	86
AlwNI	CAGNNNCTG	1 cut(s)	206
AoxI	GGCC	4 cut(s)	232, 336, 763, 776
ApeKI	GCWGC	2 cut(s)	470, 784
AspLEI	GCGC	2 cut(s)	360, 560
AspS9I	GGNCC	1 cut(s)	574
AsuC2I	CCSGG	1 cut(s)	340
AvaII	GGWCC	1 cut(s)	574
AxyI	CCTNAGG	1 cut(s)	760
BaeI	ACNNNNGTAYC	2 cut(s)	440, 473
BbvI	GCAGC	2 cut(s)	482, 771
BceAI	ACGGC	1 cut(s)	404
BciT130I	CCWGG	2 cut(s)	11, 426
BciVI	GTATCC	1 cut(s)	441
BcnI	CCSGG	1 cut(s)	340
BcoDI	GTCTC	2 cut(s)	64, 292
BfuI	GTATCC	1 cut(s)	441
BisI	GCNGC	2 cut(s)	471, 785
BlsI	GCNGC	2 cut(s)	472, 786
Bme1390I	CCNGG	3 cut(s)	11, 340, 426
Bme18I	GGWCC	1 cut(s)	574
BmgT120I	GGNCC	1 cut(s)	574
BmiI	GGNNCC	3 cut(s)	15, 113, 171
BmrFI	CCNGG	3 cut(s)	11, 340, 426
BplI	GAGNNNNNCTC	2 cut(s)	171, 203
BpmI	CTGGAG	1 cut(s)	692
BpuEI	CTTGAG	2 cut(s)	42, 101
BpuMI	CCSGG	1 cut(s)	340
BsaJI	CCNNGG	3 cut(s)	9, 424, 665
Bsc4I	CCNNNNNNNGG	1 cut(s)	670
Bse21I	CCTNAGG	1 cut(s)	760
Bse3DI	GCAATG	1 cut(s)	37
BseBI	CCWGG	2 cut(s)	11, 426
BseDI	CCNNGG	3 cut(s)	9, 424, 665
BseGI	GGATG	1 cut(s)	223
BseLI	CCNNNNNNNGG	1 cut(s)	670
BseMI	GCAATG	1 cut(s)	37
BseRI	GAGGAG	1 cut(s)	104
BseXI	GCAGC	2 cut(s)	482, 771
BseYI	CCCAGC	1 cut(s)	213
BsgI	GTGCAG	2 cut(s)	78, 850
Bsh1236I	CGCG	1 cut(s)	360
BshFI	GGCC	4 cut(s)	234, 338, 765, 778
BsiSI	CCGG	2 cut(s)	156, 339
BslFI	GGGAC	4 cut(s)	266, 347, 407, 647
BslI	CCNNNNNNNGG	1 cut(s)	670
BsmAI	GTCTC	2 cut(s)	64, 292
BsmBI	CGTCTC	1 cut(s)	292
BsmFI	GGGAC	4 cut(s)	266, 347, 407, 647
BsnI	GGCC	4 cut(s)	234, 338, 765, 778
Bsp143I	GATC	2 cut(s)	78, 174
BspACI	CCGC	1 cut(s)	804
BspANI	GGCC	4 cut(s)	234, 338, 765, 778
BspFNI	CGCG	1 cut(s)	360
BspHI	TCATGA	1 cut(s)	789
BspLI	GGNNCC	3 cut(s)	15, 113, 171
BspPI	GGATC	1 cut(s)	86
BsrDI	GCAATG	1 cut(s)	37
BssECI	CCNNGG	3 cut(s)	9, 424, 665
BssMI	GATC	2 cut(s)	78, 174
BssT1I	CCWWGG	1 cut(s)	665
Bst2UI	CCWGG	2 cut(s)	11, 426
Bst4CI	ACNGT	3 cut(s)	202, 208, 705
BstAPI	GCANNNNNTGC	1 cut(s)	92
BstC8I	GCNNGC	5 cut(s)	356, 468, 626, 635, 802
BstDEI	CTNAG	2 cut(s)	236, 760
BstF5I	GGATG	1 cut(s)	223
BstFNI	CGCG	1 cut(s)	360
BstHHI	GCGC	2 cut(s)	360, 560
BstKTI	GATC	2 cut(s)	81, 177
BstMAI	GTCTC	2 cut(s)	64, 292
BstMBI	GATC	2 cut(s)	78, 174
BstMWI	GCNNNNNNNGC	7 cut(s)	92, 118, 479, 630, 634, 730, 784
BstNI	CCWGG	2 cut(s)	11, 426
BstNSI	RCATGY	1 cut(s)	358
BstSCI	CCNGG	3 cut(s)	9, 338, 424
BstUI	CGCG	1 cut(s)	360
BstV1I	GCAGC	2 cut(s)	482, 771
Bsu36I	CCTNAGG	1 cut(s)	760
BsuI	GTATCC	1 cut(s)	441
BsuRI	GGCC	4 cut(s)	234, 338, 765, 778
BtsCI	GGATG	1 cut(s)	223
Cac8I	GCNNGC	5 cut(s)	356, 468, 626, 635, 802
CaiI	CAGNNNCTG	1 cut(s)	206
CciI	TCATGA	1 cut(s)	789
CfoI	GCGC	2 cut(s)	360, 560
Cfr13I	GGNCC	1 cut(s)	574
CseI	GACGC	1 cut(s)	349
Csp6I	GTAC	2 cut(s)	38, 209
CviAII	CATG	5 cut(s)	166, 355, 416, 647, 790
CviQI	GTAC	2 cut(s)	38, 209
DdeI	CTNAG	2 cut(s)	236, 760
DpnI	GATC	2 cut(s)	80, 176
DpnII	GATC	2 cut(s)	78, 174
EaeI	YGGCCR	1 cut(s)	336
Eco130I	CCWWGG	1 cut(s)	665
Eco147I	AGGCCT	1 cut(s)	234
Eco47I	GGWCC	1 cut(s)	574
Eco81I	CCTNAGG	1 cut(s)	760
EcoO109I	RGGNCCY	1 cut(s)	574
EcoRII	CCWGG	2 cut(s)	9, 424
EcoT14I	CCWWGG	1 cut(s)	665
ErhI	CCWWGG	1 cut(s)	665
Esp3I	CGTCTC	1 cut(s)	292
FaeI	CATG	5 cut(s)	169, 358, 419, 650, 793
FaqI	GGGAC	4 cut(s)	266, 347, 407, 647
FatI	CATG	5 cut(s)	165, 354, 415, 646, 789
FblI	GTMKAC	1 cut(s)	700
Fnu4HI	GCNGC	2 cut(s)	471, 785
FokI	GGATG	1 cut(s)	230
Fsp4HI	GCNGC	2 cut(s)	471, 785
GlaI	GCGC	2 cut(s)	359, 559
GluI	GCNGC	2 cut(s)	471, 785
GsaI	CCCAGC	1 cut(s)	217
GsuI	CTGGAG	1 cut(s)	692
HaeIII	GGCC	4 cut(s)	234, 338, 765, 778
HapII	CCGG	2 cut(s)	156, 339
HgaI	GACGC	1 cut(s)	349
HhaI	GCGC	2 cut(s)	360, 560
Hin1II	CATG	5 cut(s)	169, 358, 419, 650, 793
Hin6I	GCGC	2 cut(s)	358, 558
HinP1I	GCGC	2 cut(s)	358, 558
HincII	GTYRAC	2 cut(s)	459, 701
HindII	GTYRAC	2 cut(s)	459, 701
HinfI	GANTC	1 cut(s)	460
HpaII	CCGG	2 cut(s)	156, 339
Hpy166II	GTNNAC	4 cut(s)	6, 163, 459, 701
Hpy188I	TCNGA	4 cut(s)	83, 174, 179, 292
Hpy188III	TCNNGA	4 cut(s)	59, 392, 683, 790
Hpy8I	GTNNAC	4 cut(s)	6, 163, 459, 701
Hpy99I	CGWCG	1 cut(s)	141
HpyAV	CCTTC	2 cut(s)	56, 584
HpyCH4III	ACNGT	3 cut(s)	202, 208, 705
HpyCH4V	TGCA	9 cut(s)	30, 35, 95, 466, 482, 637, 657, 733, 831
HpyF10VI	GCNNNNNNNGC	7 cut(s)	92, 118, 479, 630, 634, 730, 784
HpyF3I	CTNAG	2 cut(s)	236, 760
Hsp92II	CATG	5 cut(s)	169, 358, 419, 650, 793
HspAI	GCGC	2 cut(s)	358, 558
Kzo9I	GATC	2 cut(s)	78, 174
LmnI	GCTCC	1 cut(s)	117
Lsp1109I	GCAGC	2 cut(s)	482, 771
MaeIII	GTNAC	2 cut(s)	202, 259
MalI	GATC	2 cut(s)	80, 176
MboI	GATC	2 cut(s)	78, 174
MboII	GAAGA	1 cut(s)	380
MluCI	AATT	7 cut(s)	41, 123, 302, 311, 408, 483, 742
MlyI	GAGTC	1 cut(s)	454
MmeI	TCCRAC	1 cut(s)	122
MnlI	CCTC	8 cut(s)	125, 224, 438, 493, 526, 565, 669, 730
MslI	CAYNNNNRTG	1 cut(s)	440
MspI	CCGG	2 cut(s)	156, 339
MspR9I	CCNGG	3 cut(s)	11, 340, 426
MvaI	CCWGG	2 cut(s)	11, 426
MvnI	CGCG	1 cut(s)	360
MwoI	GCNNNNNNNGC	7 cut(s)	92, 118, 479, 630, 634, 730, 784
NciI	CCSGG	1 cut(s)	340
NdeII	GATC	2 cut(s)	78, 174
NlaIII	CATG	5 cut(s)	169, 358, 419, 650, 793
NlaIV	GGNNCC	3 cut(s)	15, 113, 171
NspI	RCATGY	1 cut(s)	358
PaeI	GCATGC	1 cut(s)	358
PagI	TCATGA	1 cut(s)	789
PceI	AGGCCT	1 cut(s)	234
PkrI	GCNGC	2 cut(s)	472, 786
PleI	GAGTC	1 cut(s)	454
PpsI	GAGTC	1 cut(s)	454
PpuMI	RGGWCCY	1 cut(s)	574
Psp5II	RGGWCCY	1 cut(s)	574
Psp6I	CCWGG	2 cut(s)	9, 424
PspFI	CCCAGC	1 cut(s)	213
PspGI	CCWGG	2 cut(s)	9, 424
PspN4I	GGNNCC	3 cut(s)	15, 113, 171
PspPI	GGNCC	1 cut(s)	574
PspPPI	RGGWCCY	1 cut(s)	574
PstNI	CAGNNNCTG	1 cut(s)	206
RsaI	GTAC	2 cut(s)	39, 210
RsaNI	GTAC	2 cut(s)	38, 209
RseI	CAYNNNNRTG	1 cut(s)	440
SalI	GTCGAC	1 cut(s)	699
SatI	GCNGC	2 cut(s)	471, 785
Sau3AI	GATC	2 cut(s)	78, 174
Sau96I	GGNCC	1 cut(s)	574
SchI	GAGTC	1 cut(s)	454
ScrFI	CCNGG	3 cut(s)	11, 340, 426
SetI	ASST	8 cut(s)	67, 123, 134, 385, 541, 579, 642, 680
SinI	GGWCC	1 cut(s)	574
SmiMI	CAYNNNNRTG	1 cut(s)	440
SmlI	CTYRAG	2 cut(s)	57, 116
SmoI	CTYRAG	2 cut(s)	57, 116
SphI	GCATGC	1 cut(s)	358
Sse9I	AATT	7 cut(s)	41, 123, 302, 311, 408, 483, 742
SseBI	AGGCCT	1 cut(s)	234
SsiI	CCGC	1 cut(s)	804
SspI	AATATT	1 cut(s)	399
StuI	AGGCCT	1 cut(s)	234
StyD4I	CCNGG	3 cut(s)	9, 338, 424
StyI	CCWWGG	1 cut(s)	665
TaaI	ACNGT	3 cut(s)	202, 208, 705
TaqI	TCGA	2 cut(s)	308, 700
TasI	AATT	7 cut(s)	41, 123, 302, 311, 408, 483, 742
TatI	WGTACW	1 cut(s)	37
TseI	GCWGC	2 cut(s)	470, 784
TspDTI	ATGAA	3 cut(s)	116, 261, 735
VpaK11BI	GGWCC	1 cut(s)	574
XceI	RCATGY	1 cut(s)	358
XmiI	GTMKAC	1 cut(s)	700

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.