Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb5

Orthogroup ID

OG0010552

Physical Location & Seq

Genomic Coordinates Forward (+)

5642306 .. 5644271

Gene Structure 1966 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_5g09840.t2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 810 bp

ATGGACATGGTAGAGGAGGAACAATACTATTGTTGCGATGCGGGGCAATTCTATGGGGTTGCCGCACCCGGTAAGAGACGTTGGATCAGAGCACCATTTGCGCCCATCAATCTTCGGCTCTTCAACCTAATTCATACCTGTCGTCGTTGGGTTGATCCATCTGGCCTCGACTTTGTTCCCATCAGATTAAAACTCTACCACCAAACACTAACCATCTCCAGCGATGGAGTCCCCCTTTATGGTTTACCAAATTGGATGGATGAAAGACGATTTCAGATCCCTGTGTCTGATTTCCAGGTATTATCCAAAAGGGATGAGTATACACGCATCCTTGCAGGCTATCTTGATAGCCTAAACGTCCCGGAAGATGAGCAGTACGATATTATTGGAAGAATATTTGGGGTGATCGAGCAGGCTCTCCCTGGGGTGCCCATTATTGCCAGGGTAGTGTATATGACTCTGCAACTATCAAGCTATGCAATTATGTCATATATTGAGGGTTTGGTTGAATTGAGAGTCGATAGTCTGGAGGATAGACATACACTTTGTGCTATTTGTAGGGAGGACCTTGATCACTTTGGAGGGAAATATAATGATGAGCAGATGATTATTCGCTTGCCTTGCTCGCACCTTTATCACAGAGATTGCATTGTCCGTTGGCTGGGGAGGTGTGAGGTGTGCCCCTTGTGTCGACACTTTATGCCTGTTGCGGATGTGGATGCATCACTAGAATACTTGGAAGCTGAGCCGCGTTGGCCTATGCTGCTCATGATGTCTGCTGCGGAAGAAATGGAGAGAGGCGGAGTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-RING_2 zf-rbx1

Protein Analysis

270

Amino Acids

31.18

Weight (kDa)

5.05

Isoelectric Point (pI)

62.69

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-RING_2	PF13639	182 - 231	1.5e-09	Ring finger domain
zf-rbx1	PF12678	182 - 231	1.9e-09	RING-H2 zinc finger domain
zf-RING_UBOX	PF13445	183 - 228	3.7e-06	RING-type zinc-finger
zf-RING_11	PF17123	196 - 217	8.2e-06	RING-like zinc finger

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010552)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g45030 FvH4_5g04570 FvH4_5g05561 FvH4_5g05590 FvH4_5g09840 FvH4_5g09840 FvH4_6g41381 FvH4_6g41383
rosa_chinensis	RchiOBHm_Chr5g0082881
rosa_multiflora	Rmu_co8151450.1_g000001 Rmu_sc0001381.1_g000010 Rmu_sc0023803.1_g000002
rosa_roxburghii	Rroxscaffold_1G00001560
rosa_rugosa	Rorug05G0480600 Rorug05G0480800 Rorug07G0017100
rosa_samantha	Rh1DG078100 Rh5AG531000 Rh5DG566300
rosa_wichuraiana	Rw5G049770 Rw7G012350

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	427
AccI	GTMKAC	2 cut(s)	320, 691
AccII	CGCG	1 cut(s)	751
AciI	CCGC	6 cut(s)	41, 63, 710, 749, 782, 801
AclWI	GGATC	3 cut(s)	92, 149, 271
AdeI	CACNNNGTG	1 cut(s)	548
AfaI	GTAC	1 cut(s)	377
AfiI	CCNNNNNNNGG	2 cut(s)	239, 661
AgsI	TTSAA	2 cut(s)	124, 509
AjnI	CCWGG	3 cut(s)	294, 421, 440
AluBI	AGCT	2 cut(s)	474, 743
AluI	AGCT	2 cut(s)	474, 743
Alw21I	GWGCWC	1 cut(s)	94
Alw26I	GTCTC	1 cut(s)	70
AlwI	GGATC	3 cut(s)	92, 149, 271
AoxI	GGCC	2 cut(s)	163, 755
ApeKI	GCWGC	2 cut(s)	763, 779
ArsI	GACNNNNNNTTYG	2 cut(s)	528, 560
AspLEI	GCGC	1 cut(s)	103
AspS9I	GGNCC	1 cut(s)	565
AsuC2I	CCSGG	2 cut(s)	69, 362
AsuHPI	GGTGA	1 cut(s)	415
AvaII	GGWCC	1 cut(s)	565
BaeGI	GKGCMC	2 cut(s)	432, 683
BanI	GGYRCC	1 cut(s)	427
Bbv12I	GWGCWC	1 cut(s)	94
BbvI	GCAGC	2 cut(s)	750, 766
BccI	CCATC	6 cut(s)	113, 166, 188, 218, 221, 250
BciT130I	CCWGG	3 cut(s)	296, 423, 442
BclI	TGATCA	1 cut(s)	571
BcnI	CCSGG	2 cut(s)	69, 362
BcoDI	GTCTC	1 cut(s)	70
BfaI	CTAG	1 cut(s)	728
BglI	GCCNNNNNGGC	1 cut(s)	754
BisI	GCNGC	4 cut(s)	63, 749, 764, 780
BlpI	GCTNAGC	1 cut(s)	744
BlsI	GCNGC	4 cut(s)	64, 750, 765, 781
Bme1390I	CCNGG	5 cut(s)	69, 296, 362, 423, 442
Bme18I	GGWCC	1 cut(s)	565
BmgT120I	GGNCC	1 cut(s)	565
BmiI	GGNNCC	1 cut(s)	429
BmrFI	CCNGG	5 cut(s)	69, 296, 362, 423, 442
BmsI	GCATC	4 cut(s)	28, 336, 709, 731
BpmI	CTGGAG	2 cut(s)	202, 548
Bpu1102I	GCTNAGC	1 cut(s)	744
BpuMI	CCSGG	2 cut(s)	69, 362
BsaJI	CCNNGG	3 cut(s)	421, 422, 441
Bsc4I	CCNNNNNNNGG	2 cut(s)	239, 661
BseBI	CCWGG	3 cut(s)	296, 423, 442
BseDI	CCNNGG	3 cut(s)	421, 422, 441
BseGI	GGATG	6 cut(s)	261, 265, 319, 327, 718, 724
BseLI	CCNNNNNNNGG	2 cut(s)	239, 661
BseMII	CTCAG	1 cut(s)	735
BseRI	GAGGAG	1 cut(s)	29
BseSI	GKGCMC	2 cut(s)	432, 683
BseXI	GCAGC	2 cut(s)	750, 766
BseYI	CCCAGC	1 cut(s)	661
Bsh1236I	CGCG	1 cut(s)	751
BshFI	GGCC	2 cut(s)	165, 757
BshNI	GGYRCC	1 cut(s)	427
BsiHKAI	GWGCWC	1 cut(s)	94
BsiSI	CCGG	2 cut(s)	69, 362
BslFI	GGGAC	2 cut(s)	215, 344
BslI	CCNNNNNNNGG	2 cut(s)	239, 661
BsmAI	GTCTC	1 cut(s)	70
BsmBI	CGTCTC	1 cut(s)	70
BsmFI	GGGAC	2 cut(s)	215, 344
BsnI	GGCC	2 cut(s)	165, 757
Bsp1286I	GDGCHC	3 cut(s)	94, 432, 683
Bsp143I	GATC	5 cut(s)	84, 154, 276, 405, 571
Bsp1720I	GCTNAGC	1 cut(s)	744
BspACI	CCGC	6 cut(s)	41, 63, 710, 749, 782, 801
BspANI	GGCC	2 cut(s)	165, 757
BspCNI	CTCAG	1 cut(s)	736
BspFNI	CGCG	1 cut(s)	751
BspHI	TCATGA	1 cut(s)	768
BspLI	GGNNCC	1 cut(s)	429
BspPI	GGATC	3 cut(s)	92, 149, 271
BspQI	GCTCTTC	1 cut(s)	125
BspT107I	GGYRCC	1 cut(s)	427
BssECI	CCNNGG	3 cut(s)	421, 422, 441
BssMI	GATC	5 cut(s)	84, 154, 276, 405, 571
BssNAI	GTATAC	1 cut(s)	321
Bst1107I	GTATAC	1 cut(s)	321
Bst2UI	CCWGG	3 cut(s)	296, 423, 442
Bst6I	CTCTTC	1 cut(s)	125
BstAPI	GCANNNNNTGC	1 cut(s)	98
BstC8I	GCNNGC	4 cut(s)	337, 414, 617, 626
BstDEI	CTNAG	1 cut(s)	744
BstF5I	GGATG	6 cut(s)	261, 265, 319, 327, 718, 724
BstFNI	CGCG	1 cut(s)	751
BstHHI	GCGC	1 cut(s)	103
BstKTI	GATC	5 cut(s)	87, 157, 279, 408, 574
BstMAI	GTCTC	1 cut(s)	70
BstMBI	GATC	5 cut(s)	84, 154, 276, 405, 571
BstMWI	GCNNNNNNNGC	5 cut(s)	98, 621, 625, 754, 763
BstNI	CCWGG	3 cut(s)	296, 423, 442
BstSCI	CCNGG	5 cut(s)	67, 294, 360, 421, 440
BstSLI	GKGCMC	2 cut(s)	432, 683
BstUI	CGCG	1 cut(s)	751
BstV1I	GCAGC	2 cut(s)	750, 766
BstX2I	RGATCY	1 cut(s)	276
BstYI	RGATCY	1 cut(s)	276
BstZ17I	GTATAC	1 cut(s)	321
BsuRI	GGCC	2 cut(s)	165, 757
BtgZI	GCGATG	2 cut(s)	51, 237
BtsCI	GGATG	6 cut(s)	261, 265, 319, 327, 718, 724
Cac8I	GCNNGC	4 cut(s)	337, 414, 617, 626
CciI	TCATGA	1 cut(s)	768
CfoI	GCGC	1 cut(s)	103
Cfr13I	GGNCC	1 cut(s)	565
Csp6I	GTAC	1 cut(s)	376
CviAII	CATG	2 cut(s)	7, 769
CviQI	GTAC	1 cut(s)	376
DdeI	CTNAG	1 cut(s)	744
DpnI	GATC	5 cut(s)	86, 156, 278, 407, 573
DpnII	GATC	5 cut(s)	84, 154, 276, 405, 571
DraIII	CACNNNGTG	1 cut(s)	548
Eam1104I	CTCTTC	1 cut(s)	125
EarI	CTCTTC	1 cut(s)	125
Eco47I	GGWCC	1 cut(s)	565
EcoO109I	RGGNCCY	1 cut(s)	565
EcoRII	CCWGG	3 cut(s)	294, 421, 440
EcoT22I	ATGCAT	1 cut(s)	724
Esp3I	CGTCTC	1 cut(s)	70
FaeI	CATG	2 cut(s)	10, 772
FaqI	GGGAC	2 cut(s)	215, 344
FatI	CATG	2 cut(s)	6, 768
FauI	CCCGC	1 cut(s)	34
FbaI	TGATCA	1 cut(s)	571
FblI	GTMKAC	2 cut(s)	320, 691
Fnu4HI	GCNGC	4 cut(s)	63, 749, 764, 780
FokI	GGATG	6 cut(s)	268, 272, 314, 326, 725, 731
Fsp4HI	GCNGC	4 cut(s)	63, 749, 764, 780
FspBI	CTAG	1 cut(s)	728
GlaI	GCGC	1 cut(s)	102
GluI	GCNGC	4 cut(s)	63, 749, 764, 780
GsaI	CCCAGC	1 cut(s)	665
GsuI	CTGGAG	2 cut(s)	202, 548
HaeIII	GGCC	2 cut(s)	165, 757
HapII	CCGG	2 cut(s)	69, 362
HhaI	GCGC	1 cut(s)	103
Hin1II	CATG	2 cut(s)	10, 772
Hin6I	GCGC	1 cut(s)	101
HinP1I	GCGC	1 cut(s)	101
HincII	GTYRAC	1 cut(s)	692
HindII	GTYRAC	1 cut(s)	692
HinfI	GANTC	3 cut(s)	228, 457, 516
HpaII	CCGG	2 cut(s)	69, 362
HphI	GGTGA	1 cut(s)	415
Hpy166II	GTNNAC	3 cut(s)	245, 321, 692
Hpy188I	TCNGA	4 cut(s)	89, 185, 276, 289
Hpy188III	TCNNGA	3 cut(s)	344, 527, 769
Hpy8I	GTNNAC	3 cut(s)	245, 321, 692
Hpy99I	CGWCG	1 cut(s)	147
HpyCH4IV	ACGT	2 cut(s)	79, 357
HpyCH4V	TGCA	5 cut(s)	335, 463, 479, 648, 722
HpyF10VI	GCNNNNNNNGC	5 cut(s)	98, 621, 625, 754, 763
HpyF3I	CTNAG	1 cut(s)	744
HpySE526I	ACGT	2 cut(s)	79, 357
Hsp92II	CATG	2 cut(s)	10, 772
HspAI	GCGC	1 cut(s)	101
Ksp22I	TGATCA	1 cut(s)	571
Kzo9I	GATC	5 cut(s)	84, 154, 276, 405, 571
LguI	GCTCTTC	1 cut(s)	125
Lsp1109I	GCAGC	2 cut(s)	750, 766
LweI	GCATC	4 cut(s)	28, 336, 709, 731
MaeI	CTAG	1 cut(s)	728
MaeII	ACGT	2 cut(s)	79, 357
MalI	GATC	5 cut(s)	86, 156, 278, 407, 573
MboI	GATC	5 cut(s)	84, 154, 276, 405, 571
MboII	GAAGA	5 cut(s)	104, 112, 377, 402, 797
MflI	RGATCY	1 cut(s)	276
MhlI	GDGCHC	3 cut(s)	94, 432, 683
MluCI	AATT	5 cut(s)	47, 129, 250, 480, 509
MlyI	GAGTC	3 cut(s)	237, 451, 525
MmeI	TCCRAC	1 cut(s)	62
Mph1103I	ATGCAT	1 cut(s)	724
MseI	TTAA	1 cut(s)	188
MspI	CCGG	2 cut(s)	69, 362
MspR9I	CCNGG	5 cut(s)	69, 296, 362, 423, 442
MvaI	CCWGG	3 cut(s)	296, 423, 442
MvnI	CGCG	1 cut(s)	751
MwoI	GCNNNNNNNGC	5 cut(s)	98, 621, 625, 754, 763
NciI	CCSGG	2 cut(s)	69, 362
NdeII	GATC	5 cut(s)	84, 154, 276, 405, 571
NlaIII	CATG	2 cut(s)	10, 772
NlaIV	GGNNCC	1 cut(s)	429
NsiI	ATGCAT	1 cut(s)	724
PagI	TCATGA	1 cut(s)	768
PasI	CCCWGGG	1 cut(s)	422
PciSI	GCTCTTC	1 cut(s)	125
PfoI	TCCNGGA	1 cut(s)	360
PkrI	GCNGC	4 cut(s)	64, 750, 765, 781
PleI	GAGTC	3 cut(s)	236, 451, 524
PpsI	GAGTC	3 cut(s)	236, 451, 524
PpuMI	RGGWCCY	1 cut(s)	565
Psp5II	RGGWCCY	1 cut(s)	565
Psp6I	CCWGG	3 cut(s)	294, 421, 440
PspFI	CCCAGC	1 cut(s)	661
PspGI	CCWGG	3 cut(s)	294, 421, 440
PspN4I	GGNNCC	1 cut(s)	429
PspPI	GGNCC	1 cut(s)	565
PspPPI	RGGWCCY	1 cut(s)	565
PsuI	RGATCY	1 cut(s)	276
RsaI	GTAC	1 cut(s)	377
RsaNI	GTAC	1 cut(s)	376
SalI	GTCGAC	1 cut(s)	690
SapI	GCTCTTC	1 cut(s)	125
SaqAI	TTAA	1 cut(s)	188
SatI	GCNGC	4 cut(s)	63, 749, 764, 780
Sau3AI	GATC	5 cut(s)	84, 154, 276, 405, 571
Sau96I	GGNCC	1 cut(s)	565
SchI	GAGTC	3 cut(s)	237, 451, 525
ScrFI	CCNGG	5 cut(s)	69, 296, 362, 423, 442
SduI	GDGCHC	3 cut(s)	94, 432, 683
SfaNI	GCATC	4 cut(s)	28, 336, 709, 731
SinI	GGWCC	1 cut(s)	565
Sse9I	AATT	5 cut(s)	47, 129, 250, 480, 509
SsiI	CCGC	6 cut(s)	41, 63, 710, 749, 782, 801
SspI	AATATT	1 cut(s)	396
SspMI	CTAG	1 cut(s)	728
StyD4I	CCNGG	5 cut(s)	67, 294, 360, 421, 440
TaiI	ACGT	2 cut(s)	82, 360
TaqI	TCGA	4 cut(s)	168, 408, 519, 691
TasI	AATT	5 cut(s)	47, 129, 250, 480, 509
TauI	GCSGC	2 cut(s)	65, 751
Tru1I	TTAA	1 cut(s)	188
Tru9I	TTAA	1 cut(s)	188
TseI	GCWGC	2 cut(s)	763, 779
TspDTI	ATGAA	2 cut(s)	122, 276
TspGWI	ACGGA	1 cut(s)	644
VpaK11BI	GGWCC	1 cut(s)	565
XmiI	GTMKAC	2 cut(s)	320, 691
XspI	CTAG	1 cut(s)	728
Zsp2I	ATGCAT	1 cut(s)	724

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.