Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb6

Orthogroup ID

OG0010552

Physical Location & Seq

Genomic Coordinates Reverse (-)

32554522 .. 32555010

Gene Structure 489 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_6g41383.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 489 bp

ATGGATGTTCCTGAACTTGTGCAACCACCTATTATTGAAGAAATATTTAAGGTCGTTGATGTTGCCGTCCCCAAGCTGCCCATCATGGTTGATATTCTGGACATCACCTATGTGGACAGCGGCGGACTATTTCCTGCGACTAAACCAGCCATGCATTCACGGTTTGGAGAAGTGAGACTTGATAGTTTGGATGAAGCTATTGTTACACGGACGCCTTCATGCCTTATTTGCTTGAAGGACCTTGATCACCGACATATCATTACGCGACTACCTTGGTCGCATGTTTATCATGCAGATTGCATTGTTAGTTGGCTGGAGACTACTCACTTTTGCCCAGTGTGCCAATATTCAATGCCGTTTGTCCGGAGACCAAGGTGCAAGCCCTTCAATATCAATATCGGAGGGCTCAAGCTTAGGCCAAGGTGTAAACCTTTCAAAATCCGGCTAGCTCAAGCTCAAGACGACGATGGACTCCTCCGCTGCTCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000209 GO:0000902 GO:0000904 GO:0003006 GO:0003674 GO:0003824 GO:0004842 GO:0006464 GO:0006508 GO:0006511 GO:0006807 GO:0007275 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009653 GO:0009791 GO:0009826 GO:0009888 GO:0009987 GO:0010026 GO:0010154 GO:0010498 GO:0016043 GO:0016049 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0019941 GO:0022412 GO:0022414 GO:0030154 GO:0030163 GO:0032446 GO:0032501 GO:0032502 GO:0032504 GO:0032989 GO:0036211 GO:0040007 GO:0043161 GO:0043170 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0048316 GO:0048468 GO:0048589 GO:0048608 GO:0048731 GO:0048856 GO:0048869 GO:0051603 GO:0060560 GO:0061458 GO:0061630 GO:0061659 GO:0070647 GO:0071704 GO:0071840 GO:0090376 GO:0090378 GO:0090558 GO:0140096 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-RING_2 zf-rbx1

Protein Analysis

163

Amino Acids

18.48

Weight (kDa)

7.6

Isoelectric Point (pI)

57.12

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-RING_2	PF13639	73 - 115	1.9e-09	Ring finger domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010552)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g45030 FvH4_5g04570 FvH4_5g05561 FvH4_5g05590 FvH4_5g09840 FvH4_5g09840 FvH4_6g41381 FvH4_6g41383
rosa_chinensis	RchiOBHm_Chr5g0082881
rosa_multiflora	Rmu_co8151450.1_g000001 Rmu_sc0001381.1_g000010 Rmu_sc0023803.1_g000002
rosa_roxburghii	Rroxscaffold_1G00001560
rosa_rugosa	Rorug05G0480600 Rorug05G0480800 Rorug07G0017100
rosa_samantha	Rh1DG078100 Rh5AG531000 Rh5DG566300
rosa_wichuraiana	Rw5G049770 Rw7G012350

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	265
AccIII	TCCGGA	1 cut(s)	363
AciI	CCGC	3 cut(s)	120, 123, 478
AcyI	GRCGYC	1 cut(s)	212
AgsI	TTSAA	5 cut(s)	38, 235, 351, 388, 436
AleI	CACNNNNGTG	1 cut(s)	110
AluBI	AGCT	5 cut(s)	76, 197, 412, 449, 455
AluI	AGCT	5 cut(s)	76, 197, 412, 449, 455
Alw26I	GTCTC	3 cut(s)	169, 311, 361
Aor13HI	TCCGGA	1 cut(s)	363
AoxI	GGCC	1 cut(s)	416
ApeKI	GCWGC	2 cut(s)	76, 480
AspS9I	GGNCC	1 cut(s)	238
AsuHPI	GGTGA	2 cut(s)	97, 239
AsuNHI	GCTAGC	1 cut(s)	445
AvaII	GGWCC	1 cut(s)	238
BanII	GRGCYC	1 cut(s)	408
BbvI	GCAGC	2 cut(s)	63, 467
BccI	CCATC	2 cut(s)	89, 461
BceAI	ACGGC	2 cut(s)	50, 340
BclI	TGATCA	1 cut(s)	244
BcoDI	GTCTC	3 cut(s)	169, 311, 361
BfaI	CTAG	1 cut(s)	446
BisI	GCNGC	3 cut(s)	77, 121, 481
BlsI	GCNGC	3 cut(s)	78, 122, 482
Bme18I	GGWCC	1 cut(s)	238
BmgT120I	GGNCC	1 cut(s)	238
BmrI	ACTGGG	1 cut(s)	329
BmtI	GCTAGC	1 cut(s)	449
BmuI	ACTGGG	1 cut(s)	329
BpmI	CTGGAG	1 cut(s)	335
Bpu10I	CCTNAGC	1 cut(s)	413
BpuEI	CTTGAG	3 cut(s)	392, 435, 441
BsaHI	GRCGYC	1 cut(s)	212
BsaI	GGTCTC	1 cut(s)	361
BsaJI	CCNNGG	3 cut(s)	272, 371, 419
BsaWI	WCCGGW	1 cut(s)	363
Bse1I	ACTGG	1 cut(s)	335
BseAI	TCCGGA	1 cut(s)	363
BseDI	CCNNGG	3 cut(s)	272, 371, 419
BseGI	GGATG	2 cut(s)	10, 196
BseNI	ACTGG	1 cut(s)	335
BseRI	GAGGAG	1 cut(s)	464
BseXI	GCAGC	2 cut(s)	63, 467
Bsh1236I	CGCG	1 cut(s)	265
BshFI	GGCC	1 cut(s)	418
BsiSI	CCGG	2 cut(s)	364, 442
BslFI	GGGAC	1 cut(s)	53
BsmAI	GTCTC	3 cut(s)	169, 311, 361
BsmFI	GGGAC	1 cut(s)	53
BsmI	GAATGC	1 cut(s)	154
BsnI	GGCC	1 cut(s)	418
Bso31I	GGTCTC	1 cut(s)	361
Bsp1286I	GDGCHC	1 cut(s)	408
Bsp13I	TCCGGA	1 cut(s)	363
Bsp143I	GATC	1 cut(s)	244
BspACI	CCGC	3 cut(s)	120, 123, 478
BspANI	GGCC	1 cut(s)	418
BspEI	TCCGGA	1 cut(s)	363
BspFNI	CGCG	1 cut(s)	265
BspHI	TCATGA	1 cut(s)	485
BspOI	GCTAGC	1 cut(s)	449
BspTNI	GGTCTC	1 cut(s)	361
BsrI	ACTGG	1 cut(s)	335
BssECI	CCNNGG	3 cut(s)	272, 371, 419
BssMI	GATC	1 cut(s)	244
BssNI	GRCGYC	1 cut(s)	212
BssT1I	CCWWGG	3 cut(s)	272, 371, 419
Bst4CI	ACNGT	1 cut(s)	162
BstACI	GRCGYC	1 cut(s)	212
BstC8I	GCNNGC	2 cut(s)	380, 447
BstDEI	CTNAG	1 cut(s)	413
BstF5I	GGATG	2 cut(s)	10, 196
BstFNI	CGCG	1 cut(s)	265
BstKTI	GATC	1 cut(s)	247
BstMAI	GTCTC	3 cut(s)	169, 311, 361
BstMBI	GATC	1 cut(s)	244
BstMWI	GCNNNNNNNGC	2 cut(s)	228, 339
BstNSI	RCATGY	1 cut(s)	284
BstUI	CGCG	1 cut(s)	265
BstV1I	GCAGC	2 cut(s)	63, 467
BsuRI	GGCC	1 cut(s)	418
BtsCI	GGATG	2 cut(s)	10, 196
BtsIMutI	CAGTG	1 cut(s)	342
Cac8I	GCNNGC	2 cut(s)	380, 447
CciI	TCATGA	1 cut(s)	485
Cfr13I	GGNCC	1 cut(s)	238
CseI	GACGC	1 cut(s)	220
CviAII	CATG	6 cut(s)	85, 151, 219, 281, 290, 486
DdeI	CTNAG	1 cut(s)	413
DpnI	GATC	1 cut(s)	246
DpnII	GATC	1 cut(s)	244
EciI	GGCGGA	1 cut(s)	138
Eco130I	CCWWGG	3 cut(s)	272, 371, 419
Eco24I	GRGCYC	1 cut(s)	408
Eco31I	GGTCTC	1 cut(s)	361
Eco47I	GGWCC	1 cut(s)	238
EcoO109I	RGGNCCY	1 cut(s)	238
EcoT14I	CCWWGG	3 cut(s)	272, 371, 419
EcoT22I	ATGCAT	1 cut(s)	156
EcoT38I	GRGCYC	1 cut(s)	408
ErhI	CCWWGG	3 cut(s)	272, 371, 419
FaeI	CATG	6 cut(s)	88, 154, 222, 284, 293, 489
FaiI	YATR	8 cut(s)	86, 111, 152, 220, 255, 282, 291, 487
FalI	AAGNNNNNCTT	2 cut(s)	162, 194
FaqI	GGGAC	1 cut(s)	53
FatI	CATG	6 cut(s)	84, 150, 218, 280, 289, 485
FbaI	TGATCA	1 cut(s)	244
Fnu4HI	GCNGC	3 cut(s)	77, 121, 481
FokI	GGATG	2 cut(s)	17, 203
FriOI	GRGCYC	1 cut(s)	408
Fsp4HI	GCNGC	3 cut(s)	77, 121, 481
FspBI	CTAG	1 cut(s)	446
GluI	GCNGC	3 cut(s)	77, 121, 481
GsuI	CTGGAG	1 cut(s)	335
HaeIII	GGCC	1 cut(s)	418
HapII	CCGG	2 cut(s)	364, 442
HgaI	GACGC	1 cut(s)	220
Hin1I	GRCGYC	1 cut(s)	212
Hin1II	CATG	6 cut(s)	88, 154, 222, 284, 293, 489
HindIII	AAGCTT	1 cut(s)	410
HinfI	GANTC	1 cut(s)	471
HpaII	CCGG	2 cut(s)	364, 442
HphI	GGTGA	2 cut(s)	97, 239
Hpy166II	GTNNAC	2 cut(s)	115, 428
Hpy188I	TCNGA	1 cut(s)	401
Hpy188III	TCNNGA	5 cut(s)	11, 98, 364, 458, 486
Hpy8I	GTNNAC	2 cut(s)	115, 428
Hpy99I	CGWCG	1 cut(s)	467
HpyAV	CCTTC	3 cut(s)	225, 229, 394
HpyCH4III	ACNGT	1 cut(s)	162
HpyCH4V	TGCA	5 cut(s)	22, 154, 293, 300, 378
HpyF10VI	GCNNNNNNNGC	2 cut(s)	228, 339
HpyF3I	CTNAG	1 cut(s)	413
Hsp92I	GRCGYC	1 cut(s)	212
Hsp92II	CATG	6 cut(s)	88, 154, 222, 284, 293, 489
Kpn2I	TCCGGA	1 cut(s)	363
Ksp22I	TGATCA	1 cut(s)	244
Kzo9I	GATC	1 cut(s)	244
LpnPI	CCDG	8 cut(s)	24, 83, 147, 159, 299, 348, 377, 455
Lsp1109I	GCAGC	2 cut(s)	63, 467
MaeI	CTAG	1 cut(s)	446
MaeIII	GTNAC	1 cut(s)	202
MalI	GATC	1 cut(s)	246
MboI	GATC	1 cut(s)	244
MboII	GAAGA	1 cut(s)	50
MhlI	GDGCHC	1 cut(s)	408
MlyI	GAGTC	1 cut(s)	465
MnlI	CCTC	2 cut(s)	395, 485
Mph1103I	ATGCAT	1 cut(s)	156
MroI	TCCGGA	1 cut(s)	363
MseI	TTAA	1 cut(s)	48
MslI	CAYNNNNRTG	1 cut(s)	110
MspA1I	CMGCKG	2 cut(s)	120, 480
MspI	CCGG	2 cut(s)	364, 442
Mva1269I	GAATGC	1 cut(s)	154
MvnI	CGCG	1 cut(s)	265
MwoI	GCNNNNNNNGC	2 cut(s)	228, 339
NdeII	GATC	1 cut(s)	244
NheI	GCTAGC	1 cut(s)	445
NlaIII	CATG	6 cut(s)	88, 154, 222, 284, 293, 489
NsiI	ATGCAT	1 cut(s)	156
NspI	RCATGY	1 cut(s)	284
OliI	CACNNNNGTG	1 cut(s)	110
PagI	TCATGA	1 cut(s)	485
PctI	GAATGC	1 cut(s)	154
PkrI	GCNGC	3 cut(s)	78, 122, 482
PleI	GAGTC	1 cut(s)	465
PpsI	GAGTC	1 cut(s)	465
PpuMI	RGGWCCY	1 cut(s)	238
Psp5II	RGGWCCY	1 cut(s)	238
PspPI	GGNCC	1 cut(s)	238
PspPPI	RGGWCCY	1 cut(s)	238
RseI	CAYNNNNRTG	1 cut(s)	110
SaqAI	TTAA	1 cut(s)	48
SatI	GCNGC	3 cut(s)	77, 121, 481
Sau3AI	GATC	1 cut(s)	244
Sau96I	GGNCC	1 cut(s)	238
SchI	GAGTC	1 cut(s)	465
SduI	GDGCHC	1 cut(s)	408
SinI	GGWCC	1 cut(s)	238
SmiMI	CAYNNNNRTG	1 cut(s)	110
SmlI	CTYRAG	3 cut(s)	407, 450, 456
SmoI	CTYRAG	3 cut(s)	407, 450, 456
SsiI	CCGC	3 cut(s)	120, 123, 478
SspI	AATATT	2 cut(s)	45, 347
SspMI	CTAG	1 cut(s)	446
StyI	CCWWGG	3 cut(s)	272, 371, 419
TaaI	ACNGT	1 cut(s)	162
TauI	GCSGC	1 cut(s)	123
Tru1I	TTAA	1 cut(s)	48
Tru9I	TTAA	1 cut(s)	48
TscAI	CASTG	1 cut(s)	342
TseI	GCWGC	2 cut(s)	76, 480
TspDTI	ATGAA	2 cut(s)	207, 207
TspGWI	ACGGA	1 cut(s)	223
TspRI	CASTG	1 cut(s)	342
VpaK11BI	GGWCC	1 cut(s)	238
XceI	RCATGY	1 cut(s)	284
XspI	CTAG	1 cut(s)	446
Zsp2I	ATGCAT	1 cut(s)	156

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.