Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr7

Orthogroup ID

OG0010552

Physical Location & Seq

Genomic Coordinates Forward (+)

11654805 .. 11660604

Gene Structure 5800 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw7G012350.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 822 bp

ATGTATGTTATCGATGTGTGTCAAAGAGAAACAGTAGAAACCCTCCCCAGCTTGACGACTTCCGACGGAAAGGATTGGCTTCCGATCAAATTAGGCCTCTTCAGTACCTTAACCGGGAGGCGTCGTTGGATTTATGCGGATCCAGATGCAGATTCTATTTATGAAGAACCAAACCCTATAACCCAAAGACGAATGTTAGTCCCTCTCGATGATGTGAAGCTATTATCTCGAAGGGATGAGTATACAGCGGTGATGGTTAGGTATCTTTCCAACATGGGTGTCCCTCAACAAGAGCAGCCTGCTATTATTGAAGAAATATTTAAGGCTGTTGACGTGGCAGTCCCCGAGCTGCCTGTTGTGGTTGCTTTTGGGGACGTGACCTCTGTGGACAGTGGCAGACTTTTTCCTGCAACTAAATCAGCAATTCAGGATTTGGAGAAAGTGAGACCTACTAGTTTGGATGAAGCTACTATTACAGGGAAGCCTTCATGTGTTATTTGCTTGAAGGGCCTTGATCACCAACAGATGATTACTCAACTGCCTTGCTCACATATTTATCATGGAGATTGCATTGTCAGTTGGCTGGAGACGATTCACTTCTGTCCAGTCTGTCGATATTCAATGCCCTATGTCCTAGAGTGCCAACCTTTAATTTCCGAAGGCCAAAGTGCAAGCCCTTCAATATTCGAGGGCTCAGGCTCAGGCTCAGGCCAAGGCTCAAGACGGCGGAGGACTCCTCCGCTGCTTATGATATATGCCAGCGGTGTAGTAACAGGTATAGTAACTGTTATGCTACTTTGCAGATTATGGAAGCGAAGTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000209 GO:0000902 GO:0000904 GO:0003006 GO:0003674 GO:0003824 GO:0004842 GO:0006464 GO:0006508 GO:0006511 GO:0006807 GO:0007275 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009653 GO:0009791 GO:0009826 GO:0009888 GO:0009987 GO:0010026 GO:0010154 GO:0010498 GO:0016043 GO:0016049 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0019941 GO:0022412 GO:0022414 GO:0030154 GO:0030163 GO:0032446 GO:0032501 GO:0032502 GO:0032504 GO:0032989 GO:0036211 GO:0040007 GO:0043161 GO:0043170 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0048316 GO:0048468 GO:0048589 GO:0048608 GO:0048731 GO:0048856 GO:0048869 GO:0051603 GO:0060560 GO:0061458 GO:0061630 GO:0061659 GO:0070647 GO:0071704 GO:0071840 GO:0090376 GO:0090378 GO:0090558 GO:0140096 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-RING_2 zf-rbx1

Protein Analysis

273

Amino Acids

30.39

Weight (kDa)

5.64

Isoelectric Point (pI)

60.81

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-RING_2	PF13639	163 - 205	2.3e-12	Ring finger domain
zf-RING_11	PF17123	164 - 191	1.8e-08	RING-like zinc finger
zf-rbx1	PF12678	164 - 205	1.4e-06	RING-H2 zinc finger domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010552)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g45030 FvH4_5g04570 FvH4_5g05561 FvH4_5g05590 FvH4_5g09840 FvH4_5g09840 FvH4_6g41381 FvH4_6g41383
rosa_chinensis	RchiOBHm_Chr5g0082881
rosa_multiflora	Rmu_co8151450.1_g000001 Rmu_sc0001381.1_g000010 Rmu_sc0023803.1_g000002
rosa_roxburghii	Rroxscaffold_1G00001560
rosa_rugosa	Rorug05G0480600 Rorug05G0480800 Rorug07G0017100
rosa_samantha	Rh1DG078100 Rh5AG531000 Rh5DG566300
rosa_wichuraiana	Rw5G049770 Rw7G012350

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	338
AccI	GTMKAC	1 cut(s)	242
AciI	CCGC	5 cut(s)	137, 248, 727, 740, 762
AclWI	GGATC	2 cut(s)	134, 147
AcuI	CTGAAG	1 cut(s)	85
AcyI	GRCGYC	1 cut(s)	121
AfaI	GTAC	1 cut(s)	106
AfiI	CCNNNNNNNGG	1 cut(s)	114
AgsI	TTSAA	4 cut(s)	311, 505, 621, 681
AhlI	ACTAGT	1 cut(s)	452
AjiI	CACGTC	2 cut(s)	334, 376
AluBI	AGCT	4 cut(s)	51, 220, 349, 467
AluI	AGCT	4 cut(s)	51, 220, 349, 467
Alw26I	GTCTC	2 cut(s)	439, 581
AlwI	GGATC	2 cut(s)	134, 147
Ama87I	CYCGRG	1 cut(s)	344
AoxI	GGCC	4 cut(s)	94, 508, 661, 709
ApeKI	GCWGC	3 cut(s)	295, 349, 742
AspS9I	GGNCC	1 cut(s)	508
AsuC2I	CCSGG	1 cut(s)	115
AsuHPI	GGTGA	2 cut(s)	262, 509
AvaI	CYCGRG	1 cut(s)	344
BamHI	GGATCC	1 cut(s)	139
BanII	GRGCYC	1 cut(s)	695
BbvI	GCAGC	3 cut(s)	307, 336, 729
BccI	CCATC	1 cut(s)	247
BceAI	ACGGC	1 cut(s)	740
BclI	TGATCA	1 cut(s)	514
BcnI	CCSGG	1 cut(s)	115
BcoDI	GTCTC	2 cut(s)	439, 581
BcuI	ACTAGT	1 cut(s)	452
BfaI	CTAG	2 cut(s)	453, 635
BisI	GCNGC	3 cut(s)	296, 350, 743
BlsI	GCNGC	3 cut(s)	297, 351, 744
Bme1390I	CCNGG	1 cut(s)	115
BmeT110I	CYCGRG	1 cut(s)	344
BmgBI	CACGTC	2 cut(s)	334, 376
BmgT120I	GGNCC	1 cut(s)	508
BmiI	GGNNCC	1 cut(s)	141
BmrFI	CCNGG	1 cut(s)	115
BmsI	GCATC	1 cut(s)	136
BplI	GAGNNNNNCTC	2 cut(s)	721, 753
BpmI	CTGGAG	1 cut(s)	605
Bpu10I	CCTNAGC	3 cut(s)	694, 700, 706
BpuEI	CTTGAG	1 cut(s)	703
BpuMI	CCSGG	1 cut(s)	115
Bsa29I	ATCGAT	1 cut(s)	12
BsaHI	GRCGYC	1 cut(s)	121
BsaI	GGTCTC	1 cut(s)	439
BsaJI	CCNNGG	1 cut(s)	712
BsaXI	ACNNNNNCTCC	2 cut(s)	109, 139
Bsc4I	CCNNNNNNNGG	1 cut(s)	114
Bse1I	ACTGG	1 cut(s)	605
BseCI	ATCGAT	1 cut(s)	12
BseDI	CCNNGG	1 cut(s)	712
BseGI	GGATG	2 cut(s)	241, 466
BseLI	CCNNNNNNNGG	1 cut(s)	114
BseMII	CTCAG	3 cut(s)	708, 714, 720
BseNI	ACTGG	1 cut(s)	605
BseRI	GAGGAG	1 cut(s)	726
BseXI	GCAGC	3 cut(s)	307, 336, 729
BseYI	CCCAGC	1 cut(s)	47
BshFI	GGCC	4 cut(s)	96, 510, 663, 711
BshVI	ATCGAT	1 cut(s)	12
BsiHKCI	CYCGRG	1 cut(s)	344
BsiSI	CCGG	1 cut(s)	114
BslFI	GGGAC	4 cut(s)	185, 266, 326, 386
BslI	CCNNNNNNNGG	1 cut(s)	114
BsmAI	GTCTC	2 cut(s)	439, 581
BsmBI	CGTCTC	1 cut(s)	581
BsmFI	GGGAC	4 cut(s)	185, 266, 326, 386
BsnI	GGCC	4 cut(s)	96, 510, 663, 711
Bso31I	GGTCTC	1 cut(s)	439
BsoBI	CYCGRG	1 cut(s)	344
Bsp1286I	GDGCHC	1 cut(s)	695
Bsp143I	GATC	3 cut(s)	84, 139, 514
BspACI	CCGC	5 cut(s)	137, 248, 727, 740, 762
BspANI	GGCC	4 cut(s)	96, 510, 663, 711
BspCNI	CTCAG	3 cut(s)	707, 713, 719
BspDI	ATCGAT	1 cut(s)	12
BspLI	GGNNCC	1 cut(s)	141
BspPI	GGATC	2 cut(s)	134, 147
BspTNI	GGTCTC	1 cut(s)	439
BsrI	ACTGG	1 cut(s)	605
BssECI	CCNNGG	1 cut(s)	712
BssMI	GATC	3 cut(s)	84, 139, 514
BssNAI	GTATAC	1 cut(s)	243
BssNI	GRCGYC	1 cut(s)	121
BssT1I	CCWWGG	1 cut(s)	712
Bst1107I	GTATAC	1 cut(s)	243
Bst4CI	ACNGT	3 cut(s)	34, 392, 787
Bst6I	CTCTTC	1 cut(s)	104
BstACI	GRCGYC	1 cut(s)	121
BstC8I	GCNNGC	3 cut(s)	300, 673, 760
BstDEI	CTNAG	3 cut(s)	694, 700, 706
BstF5I	GGATG	2 cut(s)	241, 466
BstKTI	GATC	3 cut(s)	87, 142, 517
BstMAI	GTCTC	2 cut(s)	439, 581
BstMBI	GATC	3 cut(s)	84, 139, 514
BstMWI	GCNNNNNNNGC	1 cut(s)	507
BstSCI	CCNGG	1 cut(s)	113
BstV1I	GCAGC	3 cut(s)	307, 336, 729
BstX2I	RGATCY	1 cut(s)	139
BstYI	RGATCY	1 cut(s)	139
BstZ17I	GTATAC	1 cut(s)	243
Bsu15I	ATCGAT	1 cut(s)	12
BsuRI	GGCC	4 cut(s)	96, 510, 663, 711
BsuTUI	ATCGAT	1 cut(s)	12
BtrI	CACGTC	2 cut(s)	334, 376
BtsCI	GGATG	2 cut(s)	241, 466
BtsIMutI	CAGTG	1 cut(s)	397
Cac8I	GCNNGC	3 cut(s)	300, 673, 760
Cfr13I	GGNCC	1 cut(s)	508
ClaI	ATCGAT	1 cut(s)	12
CseI	GACGC	1 cut(s)	110
Csp6I	GTAC	1 cut(s)	105
CviAII	CATG	3 cut(s)	274, 489, 560
CviQI	GTAC	1 cut(s)	105
DdeI	CTNAG	3 cut(s)	694, 700, 706
DpnI	GATC	3 cut(s)	86, 141, 516
DpnII	GATC	3 cut(s)	84, 139, 514
DrdI	GACNNNNNNGTC	1 cut(s)	338
DseDI	GACNNNNNNGTC	1 cut(s)	338
Eam1104I	CTCTTC	1 cut(s)	104
EarI	CTCTTC	1 cut(s)	104
EciI	GGCGGA	1 cut(s)	742
Eco130I	CCWWGG	1 cut(s)	712
Eco147I	AGGCCT	1 cut(s)	96
Eco24I	GRGCYC	1 cut(s)	695
Eco31I	GGTCTC	1 cut(s)	439
Eco57I	CTGAAG	1 cut(s)	85
Eco88I	CYCGRG	1 cut(s)	344
EcoO109I	RGGNCCY	1 cut(s)	508
EcoT14I	CCWWGG	1 cut(s)	712
EcoT38I	GRGCYC	1 cut(s)	695
ErhI	CCWWGG	1 cut(s)	712
Esp3I	CGTCTC	1 cut(s)	581
FaeI	CATG	3 cut(s)	277, 492, 563
FaqI	GGGAC	4 cut(s)	185, 266, 326, 386
FatI	CATG	3 cut(s)	273, 488, 559
FbaI	TGATCA	1 cut(s)	514
FblI	GTMKAC	1 cut(s)	242
Fnu4HI	GCNGC	3 cut(s)	296, 350, 743
FokI	GGATG	2 cut(s)	248, 473
FriOI	GRGCYC	1 cut(s)	695
Fsp4HI	GCNGC	3 cut(s)	296, 350, 743
FspBI	CTAG	2 cut(s)	453, 635
GluI	GCNGC	3 cut(s)	296, 350, 743
GsaI	CCCAGC	1 cut(s)	51
GsuI	CTGGAG	1 cut(s)	605
HaeIII	GGCC	4 cut(s)	96, 510, 663, 711
HapII	CCGG	1 cut(s)	114
HgaI	GACGC	1 cut(s)	110
Hin1I	GRCGYC	1 cut(s)	121
Hin1II	CATG	3 cut(s)	277, 492, 563
HincII	GTYRAC	1 cut(s)	331
HindII	GTYRAC	1 cut(s)	331
HinfI	GANTC	3 cut(s)	152, 592, 733
HpaII	CCGG	1 cut(s)	114
HphI	GGTGA	2 cut(s)	262, 509
Hpy166II	GTNNAC	3 cut(s)	243, 331, 388
Hpy188I	TCNGA	3 cut(s)	64, 84, 658
Hpy188III	TCNNGA	5 cut(s)	143, 206, 228, 428, 720
Hpy8I	GTNNAC	3 cut(s)	243, 331, 388
Hpy99I	CGWCG	2 cut(s)	68, 126
HpyAV	CCTTC	5 cut(s)	225, 495, 499, 653, 687
HpyCH4III	ACNGT	3 cut(s)	34, 392, 787
HpyCH4IV	ACGT	2 cut(s)	333, 375
HpyCH4V	TGCA	5 cut(s)	149, 410, 570, 671, 801
HpyF10VI	GCNNNNNNNGC	1 cut(s)	507
HpyF3I	CTNAG	3 cut(s)	694, 700, 706
HpySE526I	ACGT	2 cut(s)	333, 375
Hsp92I	GRCGYC	1 cut(s)	121
Hsp92II	CATG	3 cut(s)	277, 492, 563
Ksp22I	TGATCA	1 cut(s)	514
Kzo9I	GATC	3 cut(s)	84, 139, 514
Lsp1109I	GCAGC	3 cut(s)	307, 336, 729
LweI	GCATC	1 cut(s)	136
MaeI	CTAG	2 cut(s)	453, 635
MaeII	ACGT	2 cut(s)	333, 375
MaeIII	GTNAC	3 cut(s)	376, 769, 781
MalI	GATC	3 cut(s)	86, 141, 516
MboI	GATC	3 cut(s)	84, 139, 514
MboII	GAAGA	3 cut(s)	91, 176, 323
MflI	RGATCY	1 cut(s)	139
MhlI	GDGCHC	1 cut(s)	695
MluCI	AATT	3 cut(s)	89, 423, 651
MlyI	GAGTC	1 cut(s)	727
MmeI	TCCRAC	3 cut(s)	87, 107, 294
MnlI	CCTC	9 cut(s)	53, 107, 111, 213, 294, 391, 682, 723, 747
MseI	TTAA	3 cut(s)	110, 321, 650
MspA1I	CMGCKG	3 cut(s)	248, 742, 762
MspI	CCGG	1 cut(s)	114
MspR9I	CCNGG	1 cut(s)	115
MwoI	GCNNNNNNNGC	1 cut(s)	507
NciI	CCSGG	1 cut(s)	115
NdeII	GATC	3 cut(s)	84, 139, 514
NlaIII	CATG	3 cut(s)	277, 492, 563
NlaIV	GGNNCC	1 cut(s)	141
NmuCI	GTSAC	1 cut(s)	376
PceI	AGGCCT	1 cut(s)	96
PfeI	GAWTC	2 cut(s)	152, 592
PkrI	GCNGC	3 cut(s)	297, 351, 744
PleI	GAGTC	1 cut(s)	727
PpsI	GAGTC	1 cut(s)	727
PspFI	CCCAGC	1 cut(s)	47
PspN4I	GGNNCC	1 cut(s)	141
PspPI	GGNCC	1 cut(s)	508
PsuI	RGATCY	1 cut(s)	139
RsaI	GTAC	1 cut(s)	106
RsaNI	GTAC	1 cut(s)	105
SaqAI	TTAA	3 cut(s)	110, 321, 650
SatI	GCNGC	3 cut(s)	296, 350, 743
Sau3AI	GATC	3 cut(s)	84, 139, 514
Sau96I	GGNCC	1 cut(s)	508
SchI	GAGTC	1 cut(s)	727
ScrFI	CCNGG	1 cut(s)	115
SduI	GDGCHC	1 cut(s)	695
SfaNI	GCATC	1 cut(s)	136
SmlI	CTYRAG	1 cut(s)	718
SmoI	CTYRAG	1 cut(s)	718
SpeI	ACTAGT	1 cut(s)	452
Sse9I	AATT	3 cut(s)	89, 423, 651
SseBI	AGGCCT	1 cut(s)	96
SsiI	CCGC	5 cut(s)	137, 248, 727, 740, 762
SspI	AATATT	2 cut(s)	318, 684
SspMI	CTAG	2 cut(s)	453, 635
StuI	AGGCCT	1 cut(s)	96
StyD4I	CCNGG	1 cut(s)	113
StyI	CCWWGG	1 cut(s)	712
TaaI	ACNGT	3 cut(s)	34, 392, 787
TaiI	ACGT	2 cut(s)	336, 378
TaqI	TCGA	5 cut(s)	12, 207, 229, 613, 687
TasI	AATT	3 cut(s)	89, 423, 651
TfiI	GAWTC	2 cut(s)	152, 592
Tru1I	TTAA	3 cut(s)	110, 321, 650
Tru9I	TTAA	3 cut(s)	110, 321, 650
TscAI	CASTG	1 cut(s)	397
TseFI	GTSAC	1 cut(s)	376
TseI	GCWGC	3 cut(s)	295, 349, 742
Tsp45I	GTSAC	1 cut(s)	376
TspDTI	ATGAA	3 cut(s)	177, 477, 477
TspGWI	ACGGA	1 cut(s)	81
TspRI	CASTG	1 cut(s)	397
XmiI	GTMKAC	1 cut(s)	242
XspI	CTAG	2 cut(s)	453, 635

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.