ubiquitin-protein transferase activity
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Species | Orthologous Gene IDs |
|---|---|
| fragaria_vesca | FvH4_3g45020 FvH4_3g45040 FvH4_3g45051 FvH4_3g45051 FvH4_4g04731 FvH4_4g08081 FvH4_5g09850 FvH4_5g09850 FvH4_5g09850 FvH4_5g09850 FvH4_5g09850 FvH4_5g09850 |
| rosa_chinensis | RchiOBHm_Chr1g0327511 RchiOBHm_Chr2g0145621 RchiOBHm_Chr5g0082901 |
| rosa_laevigata | RLG00000025408 |
| rosa_multiflora | Rmu_sc0004031.1_g000014 Rmu_sc0007172.1_g000007 |
| rosa_roxburghii | Rroxscaffold_1G00001500 Rroxscaffold_2G00154430 Rroxscaffold_6G00424730 |
| rosa_rugosa | Rorug05G0480700 Rorug05G0480800 Rorug05G0480900 Rorug05G0481200 Rorug05G0481300 Rorug05G0481400 Rorug05G0481500 |
| rosa_samantha | Rh5BG558000 Rh5DG566600 |
| rosa_wichuraiana | Rw5G049760 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AciI | CCGC | 1 cut(s) | 447 |
| AclWI | GGATC | 3 cut(s) | 375, 388, 413 |
| AcsI | RAATTY | 1 cut(s) | 25 |
| AcuI | CTGAAG | 1 cut(s) | 266 |
| AfaI | GTAC | 1 cut(s) | 364 |
| AgsI | TTSAA | 3 cut(s) | 64, 147, 397 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 167, 199 |
| AluBI | AGCT | 4 cut(s) | 150, 157, 224, 252 |
| AluI | AGCT | 4 cut(s) | 150, 157, 224, 252 |
| Alw21I | GWGCWC | 1 cut(s) | 206 |
| Alw26I | GTCTC | 1 cut(s) | 87 |
| AlwI | GGATC | 3 cut(s) | 375, 388, 413 |
| Ama87I | CYCGRG | 1 cut(s) | 450 |
| ApoI | RAATTY | 1 cut(s) | 25 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 142 |
| AsuHPI | GGTGA | 2 cut(s) | 63, 299 |
| AvaI | CYCGRG | 1 cut(s) | 450 |
| BamHI | GGATCC | 1 cut(s) | 380 |
| BbsI | GAAGAC | 1 cut(s) | 24 |
| Bbv12I | GWGCWC | 1 cut(s) | 206 |
| BccI | CCATC | 1 cut(s) | 127 |
| BcoDI | GTCTC | 1 cut(s) | 87 |
| BfmI | CTRYAG | 1 cut(s) | 247 |
| BisI | GCNGC | 1 cut(s) | 447 |
| BlsI | GCNGC | 1 cut(s) | 448 |
| BmeT110I | CYCGRG | 1 cut(s) | 450 |
| BmiI | GGNNCC | 1 cut(s) | 382 |
| BmrI | ACTGGG | 1 cut(s) | 99 |
| BmsI | GCATC | 1 cut(s) | 229 |
| BmuI | ACTGGG | 1 cut(s) | 99 |
| BpiI | GAAGAC | 1 cut(s) | 24 |
| BsaJI | CCNNGG | 2 cut(s) | 183, 451 |
| Bse1I | ACTGG | 1 cut(s) | 94 |
| Bse3DI | GCAATG | 1 cut(s) | 439 |
| BseDI | CCNNGG | 2 cut(s) | 183, 451 |
| BseMI | GCAATG | 1 cut(s) | 439 |
| BseMII | CTCAG | 2 cut(s) | 144, 365 |
| BseNI | ACTGG | 1 cut(s) | 94 |
| BsiHKAI | GWGCWC | 1 cut(s) | 206 |
| BsiHKCI | CYCGRG | 1 cut(s) | 450 |
| BslFI | GGGAC | 1 cut(s) | 340 |
| BsmAI | GTCTC | 1 cut(s) | 87 |
| BsmFI | GGGAC | 1 cut(s) | 340 |
| BsoBI | CYCGRG | 1 cut(s) | 450 |
| Bsp1286I | GDGCHC | 1 cut(s) | 206 |
| Bsp143I | GATC | 2 cut(s) | 380, 418 |
| BspACI | CCGC | 1 cut(s) | 447 |
| BspCNI | CTCAG | 2 cut(s) | 145, 364 |
| BspLI | GGNNCC | 1 cut(s) | 382 |
| BspPI | GGATC | 3 cut(s) | 375, 388, 413 |
| BsrDI | GCAATG | 1 cut(s) | 439 |
| BsrI | ACTGG | 1 cut(s) | 94 |
| BssECI | CCNNGG | 2 cut(s) | 183, 451 |
| BssMI | GATC | 2 cut(s) | 380, 418 |
| BssT1I | CCWWGG | 1 cut(s) | 183 |
| Bst4CI | ACNGT | 2 cut(s) | 180, 443 |
| Bst6I | CTCTTC | 1 cut(s) | 148 |
| BstC8I | GCNNGC | 1 cut(s) | 244 |
| BstDEI | CTNAG | 3 cut(s) | 153, 311, 351 |
| BstKTI | GATC | 2 cut(s) | 383, 421 |
| BstMAI | GTCTC | 1 cut(s) | 87 |
| BstMBI | GATC | 2 cut(s) | 380, 418 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 443, 472 |
| BstSFI | CTRYAG | 1 cut(s) | 247 |
| BstV2I | GAAGAC | 1 cut(s) | 24 |
| BstX2I | RGATCY | 1 cut(s) | 380 |
| BstYI | RGATCY | 1 cut(s) | 380 |
| BtsIMutI | CAGTG | 1 cut(s) | 448 |
| Cac8I | GCNNGC | 1 cut(s) | 244 |
| Csp6I | GTAC | 1 cut(s) | 363 |
| CviAII | CATG | 2 cut(s) | 198, 371 |
| CviJI | RGCY | 4 cut(s) | 150, 157, 224, 252 |
| CviKI_1 | RGCY | 4 cut(s) | 150, 157, 224, 252 |
| CviQI | GTAC | 1 cut(s) | 363 |
| DdeI | CTNAG | 3 cut(s) | 153, 311, 351 |
| DpnI | GATC | 2 cut(s) | 382, 420 |
| DpnII | GATC | 2 cut(s) | 380, 418 |
| Eam1104I | CTCTTC | 1 cut(s) | 148 |
| EarI | CTCTTC | 1 cut(s) | 148 |
| Eco130I | CCWWGG | 1 cut(s) | 183 |
| Eco57I | CTGAAG | 1 cut(s) | 266 |
| Eco88I | CYCGRG | 1 cut(s) | 450 |
| EcoT14I | CCWWGG | 1 cut(s) | 183 |
| ErhI | CCWWGG | 1 cut(s) | 183 |
| FaeI | CATG | 2 cut(s) | 201, 374 |
| FaiI | YATR | 6 cut(s) | 199, 227, 249, 330, 372, 392 |
| FaqI | GGGAC | 1 cut(s) | 340 |
| FatI | CATG | 2 cut(s) | 197, 370 |
| Fnu4HI | GCNGC | 1 cut(s) | 447 |
| Fsp4HI | GCNGC | 1 cut(s) | 447 |
| GluI | GCNGC | 1 cut(s) | 447 |
| Hin1II | CATG | 2 cut(s) | 201, 374 |
| HinfI | GANTC | 1 cut(s) | 68 |
| HphI | GGTGA | 2 cut(s) | 63, 299 |
| Hpy188I | TCNGA | 1 cut(s) | 154 |
| Hpy188III | TCNNGA | 1 cut(s) | 378 |
| HpyCH4III | ACNGT | 2 cut(s) | 180, 443 |
| HpyCH4V | TGCA | 1 cut(s) | 242 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 443, 472 |
| HpyF3I | CTNAG | 3 cut(s) | 153, 311, 351 |
| Hsp92II | CATG | 2 cut(s) | 201, 374 |
| Kzo9I | GATC | 2 cut(s) | 380, 418 |
| LmnI | GCTCC | 1 cut(s) | 201 |
| LpnPI | CCDG | 4 cut(s) | 75, 110, 269, 363 |
| LweI | GCATC | 1 cut(s) | 229 |
| MaeIII | GTNAC | 2 cut(s) | 69, 305 |
| MalI | GATC | 2 cut(s) | 382, 420 |
| MboI | GATC | 2 cut(s) | 380, 418 |
| MboII | GAAGA | 6 cut(s) | 24, 25, 135, 248, 272, 425 |
| MflI | RGATCY | 1 cut(s) | 380 |
| MhlI | GDGCHC | 1 cut(s) | 206 |
| MluCI | AATT | 2 cut(s) | 25, 457 |
| MlyI | GAGTC | 1 cut(s) | 77 |
| MmeI | TCCRAC | 1 cut(s) | 110 |
| MnlI | CCTC | 5 cut(s) | 46, 334, 378, 385, 446 |
| MroXI | GAANNNNTTC | 1 cut(s) | 142 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 443, 472 |
| NdeII | GATC | 2 cut(s) | 380, 418 |
| NlaIII | CATG | 2 cut(s) | 201, 374 |
| NlaIV | GGNNCC | 1 cut(s) | 382 |
| NmuCI | GTSAC | 2 cut(s) | 69, 305 |
| PdmI | GAANNNNTTC | 1 cut(s) | 142 |
| PkrI | GCNGC | 1 cut(s) | 448 |
| PleI | GAGTC | 1 cut(s) | 76 |
| PpsI | GAGTC | 1 cut(s) | 76 |
| PspN4I | GGNNCC | 1 cut(s) | 382 |
| PsuI | RGATCY | 1 cut(s) | 380 |
| RsaI | GTAC | 1 cut(s) | 364 |
| RsaNI | GTAC | 1 cut(s) | 363 |
| SatI | GCNGC | 1 cut(s) | 447 |
| Sau3AI | GATC | 2 cut(s) | 380, 418 |
| SchI | GAGTC | 1 cut(s) | 77 |
| SduI | GDGCHC | 1 cut(s) | 206 |
| SfaNI | GCATC | 1 cut(s) | 229 |
| SfcI | CTRYAG | 1 cut(s) | 247 |
| Sse9I | AATT | 2 cut(s) | 25, 457 |
| SsiI | CCGC | 1 cut(s) | 447 |
| SspI | AATATT | 1 cut(s) | 167 |
| StyI | CCWWGG | 1 cut(s) | 183 |
| TaaI | ACNGT | 2 cut(s) | 180, 443 |
| TaqI | TCGA | 1 cut(s) | 104 |
| TasI | AATT | 2 cut(s) | 25, 457 |
| TauI | GCSGC | 1 cut(s) | 449 |
| TscAI | CASTG | 1 cut(s) | 448 |
| TseFI | GTSAC | 2 cut(s) | 69, 305 |
| Tsp45I | GTSAC | 2 cut(s) | 69, 305 |
| TspDTI | ATGAA | 1 cut(s) | 306 |
| TspRI | CASTG | 1 cut(s) | 448 |
| XapI | RAATTY | 1 cut(s) | 25 |
| XmnI | GAANNNNTTC | 1 cut(s) | 142 |