Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb3

Orthogroup ID

OG0004852

Physical Location & Seq

Genomic Coordinates Forward (+)

37487167 .. 37490345

Gene Structure 3179 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_3g45051.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 804 bp

ATGTCGAGCACCCAAAGCCAGGGCCAGAGGCACTTGGATTTCTTATTTAGCTGGGCGTCACAGTGGGACCCCAATGGAGGTGTTCAACTAGCTTCCATCAAAAGAAGAAGACATGCTCTGATCAAACATGCCTTCTTCAAGATTACTTGTCCCTTTCGTCGTTGGATTGACCCACGAAGTGATCAGATGATTCCCATCCACTTAATGGTCATCACGCAGTCCCGAACCCGTGCCTCCATTCATTCTCCAATCGAAATTGGGAAACTAAAACTCTACGGTGAACGACGGTTTACGGTCCCTGTCTCAGATGCCATACCTGAAAGGAGGGATATGTATAAGGGGATAGTTGAAGGGTTTATTTCCACCATGGTTATTGTTTCAAAAACGAAACAACCAGATATTATGCAACCGATATACAAGGCGATTGAAAAGGCCGAGCCCGGTTGGCCTATTGATGTGGTCATAATGCTCGTGACTGTTGACATTTTGGGCAAGTCTGTCGTTCCAACAACCAAATCGGTGTTTTCCCATCTGGACAACGTGAGGCTTGATGATTTGGAATCTACTGTTAGACAGAAGCCGTGTAGTCTTTGTGGCAAGAGCCTTGATCACTTCTGCGATGCAGGAGAAGGGATAACTCGCTTGTCCTGCTCCCACCTTTTTCATGTAGGTTGCTTTGTCCAGTGGTTGGAGCTGACTAAGCTGAGTCCTGCGCATGCCTGCCCCACCTGCCATCACCCGCCAGGTATTGTGAAATGTTGGAAAAAGAACATGACAAGACCCACACCGAAAACACCCAGCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-RING_2 zf-rbx1

Protein Analysis

268

Amino Acids

30.25

Weight (kDa)

9.49

Isoelectric Point (pI)

51.56

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004852)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g45020 FvH4_3g45040 FvH4_3g45051 FvH4_3g45051 FvH4_4g04731 FvH4_4g08081 FvH4_5g09850 FvH4_5g09850 FvH4_5g09850 FvH4_5g09850 FvH4_5g09850 FvH4_5g09850
rosa_chinensis	RchiOBHm_Chr1g0327511 RchiOBHm_Chr2g0145621 RchiOBHm_Chr5g0082901
rosa_laevigata	RLG00000025408
rosa_multiflora	Rmu_sc0004031.1_g000014 Rmu_sc0007172.1_g000007
rosa_roxburghii	Rroxscaffold_1G00001500 Rroxscaffold_2G00154430 Rroxscaffold_6G00424730
rosa_rugosa	Rorug05G0480700 Rorug05G0480800 Rorug05G0480900 Rorug05G0481200 Rorug05G0481300 Rorug05G0481400 Rorug05G0481500
rosa_samantha	Rh5BG558000 Rh5DG566600
rosa_wichuraiana	Rw5G049760

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	737
Acc16I	TGCGCA	1 cut(s)	714
Acc36I	ACCTGC	1 cut(s)	737
AccB7I	CCANNNNNTGG	2 cut(s)	205, 688
AciI	CCGC	1 cut(s)	740
AcyI	GRCGYC	1 cut(s)	56
AdeI	CACNNNGTG	1 cut(s)	179
AfiI	CCNNNNNNNGG	4 cut(s)	19, 77, 205, 688
AgsI	TTSAA	5 cut(s)	86, 139, 350, 381, 428
AjnI	CCWGG	2 cut(s)	18, 742
AluBI	AGCT	5 cut(s)	51, 92, 694, 703, 801
AluI	AGCT	5 cut(s)	51, 92, 694, 703, 801
Alw21I	GWGCWC	1 cut(s)	11
Alw26I	GTCTC	1 cut(s)	307
AoxI	GGCC	3 cut(s)	22, 432, 446
AspLEI	GCGC	1 cut(s)	715
AspS9I	GGNCC	3 cut(s)	22, 67, 295
AsuC2I	CCSGG	1 cut(s)	441
AsuHPI	GGTGA	2 cut(s)	290, 728
AvaII	GGWCC	2 cut(s)	67, 295
BanII	GRGCYC	1 cut(s)	441
BauI	CACGAG	1 cut(s)	470
BbsI	GAAGAC	1 cut(s)	115
Bbv12I	GWGCWC	1 cut(s)	11
BccI	CCATC	4 cut(s)	104, 203, 537, 741
BceAI	ACGGC	1 cut(s)	565
BcgI	CGANNNNNNTGC	2 cut(s)	481, 515
BciT130I	CCWGG	2 cut(s)	20, 744
BclI	TGATCA	3 cut(s)	120, 181, 607
BcnI	CCSGG	1 cut(s)	441
BcoDI	GTCTC	1 cut(s)	307
BfaI	CTAG	1 cut(s)	89
BfuAI	ACCTGC	1 cut(s)	737
BglI	GCCNNNNNGGC	1 cut(s)	445
Bme1390I	CCNGG	3 cut(s)	20, 441, 744
Bme18I	GGWCC	2 cut(s)	67, 295
BmgT120I	GGNCC	3 cut(s)	22, 67, 295
BmiI	GGNNCC	3 cut(s)	68, 69, 297
BmrFI	CCNGG	3 cut(s)	20, 441, 744
BmsI	GCATC	2 cut(s)	298, 610
BpiI	GAAGAC	1 cut(s)	115
BpuMI	CCSGG	1 cut(s)	441
BsaBI	GATNNNNATC	1 cut(s)	194
BsaHI	GRCGYC	1 cut(s)	56
BsaJI	CCNNGG	2 cut(s)	19, 366
Bsc4I	CCNNNNNNNGG	4 cut(s)	19, 77, 205, 688
Bse1I	ACTGG	1 cut(s)	682
Bse8I	GATNNNNATC	1 cut(s)	194
BseBI	CCWGG	2 cut(s)	20, 744
BseDI	CCNNGG	2 cut(s)	19, 366
BseGI	GGATG	1 cut(s)	195
BseJI	GATNNNNATC	1 cut(s)	194
BseLI	CCNNNNNNNGG	4 cut(s)	19, 77, 205, 688
BseMII	CTCAG	2 cut(s)	318, 695
BseNI	ACTGG	1 cut(s)	682
BseYI	CCCAGC	2 cut(s)	51, 797
BshFI	GGCC	3 cut(s)	24, 434, 448
BsiHKAI	GWGCWC	1 cut(s)	11
BsiSI	CCGG	1 cut(s)	441
BslFI	GGGAC	4 cut(s)	80, 135, 205, 281
BslI	CCNNNNNNNGG	4 cut(s)	19, 77, 205, 688
BsmAI	GTCTC	1 cut(s)	307
BsmFI	GGGAC	4 cut(s)	80, 135, 205, 281
BsnI	GGCC	3 cut(s)	24, 434, 448
Bsp1286I	GDGCHC	2 cut(s)	11, 441
Bsp143I	GATC	3 cut(s)	120, 181, 607
Bsp19I	CCATGG	1 cut(s)	366
BspACI	CCGC	1 cut(s)	740
BspANI	GGCC	3 cut(s)	24, 434, 448
BspCNI	CTCAG	2 cut(s)	317, 696
BspLI	GGNNCC	3 cut(s)	68, 69, 297
BspMI	ACCTGC	1 cut(s)	737
BsrI	ACTGG	1 cut(s)	682
BssECI	CCNNGG	2 cut(s)	19, 366
BssMI	GATC	3 cut(s)	120, 181, 607
BssNI	GRCGYC	1 cut(s)	56
BssSI	CACGAG	1 cut(s)	470
BssT1I	CCWWGG	1 cut(s)	366
Bst2BI	CACGAG	1 cut(s)	470
Bst2UI	CCWGG	2 cut(s)	20, 744
Bst4CI	ACNGT	6 cut(s)	63, 278, 288, 295, 478, 568
BstACI	GRCGYC	1 cut(s)	56
BstC8I	GCNNGC	2 cut(s)	717, 721
BstDEI	CTNAG	3 cut(s)	304, 699, 704
BstDSI	CCRYGG	1 cut(s)	366
BstF5I	GGATG	1 cut(s)	195
BstHHI	GCGC	1 cut(s)	715
BstKTI	GATC	3 cut(s)	123, 184, 610
BstMAI	GTCTC	1 cut(s)	307
BstMBI	GATC	3 cut(s)	120, 181, 607
BstMWI	GCNNNNNNNGC	5 cut(s)	15, 445, 648, 700, 729
BstNI	CCWGG	2 cut(s)	20, 744
BstNSI	RCATGY	3 cut(s)	116, 131, 719
BstSCI	CCNGG	3 cut(s)	18, 439, 742
BstV2I	GAAGAC	1 cut(s)	115
BsuRI	GGCC	3 cut(s)	24, 434, 448
BtgI	CCRYGG	1 cut(s)	366
BtgZI	GCGATG	1 cut(s)	633
BtsCI	GGATG	1 cut(s)	195
BtsIMutI	CAGTG	2 cut(s)	68, 689
BveI	ACCTGC	1 cut(s)	737
Cac8I	GCNNGC	2 cut(s)	717, 721
CfoI	GCGC	1 cut(s)	715
Cfr13I	GGNCC	3 cut(s)	22, 67, 295
CseI	GACGC	1 cut(s)	45
CviAII	CATG	6 cut(s)	113, 128, 367, 665, 716, 772
DdeI	CTNAG	3 cut(s)	304, 699, 704
DpnI	GATC	3 cut(s)	122, 183, 609
DpnII	GATC	3 cut(s)	120, 181, 607
DraIII	CACNNNGTG	1 cut(s)	179
Eco130I	CCWWGG	1 cut(s)	366
Eco24I	GRGCYC	1 cut(s)	441
Eco47I	GGWCC	2 cut(s)	67, 295
EcoO109I	RGGNCCY	1 cut(s)	67
EcoRII	CCWGG	2 cut(s)	18, 742
EcoT14I	CCWWGG	1 cut(s)	366
EcoT38I	GRGCYC	1 cut(s)	441
ErhI	CCWWGG	1 cut(s)	366
FaeI	CATG	6 cut(s)	116, 131, 370, 668, 719, 775
FaqI	GGGAC	4 cut(s)	80, 135, 205, 281
FatI	CATG	6 cut(s)	112, 127, 366, 664, 715, 771
FauI	CCCGC	1 cut(s)	747
FbaI	TGATCA	3 cut(s)	120, 181, 607
FokI	GGATG	1 cut(s)	182
FriOI	GRGCYC	1 cut(s)	441
FspBI	CTAG	1 cut(s)	89
FspI	TGCGCA	1 cut(s)	714
GlaI	GCGC	1 cut(s)	714
GsaI	CCCAGC	2 cut(s)	55, 801
HaeIII	GGCC	3 cut(s)	24, 434, 448
HapII	CCGG	1 cut(s)	441
HgaI	GACGC	1 cut(s)	45
HhaI	GCGC	1 cut(s)	715
Hin1I	GRCGYC	1 cut(s)	56
Hin1II	CATG	6 cut(s)	116, 131, 370, 668, 719, 775
Hin6I	GCGC	1 cut(s)	713
HinP1I	GCGC	1 cut(s)	713
HincII	GTYRAC	1 cut(s)	481
HindII	GTYRAC	1 cut(s)	481
HinfI	GANTC	3 cut(s)	190, 560, 706
HpaII	CCGG	1 cut(s)	441
HphI	GGTGA	2 cut(s)	290, 728
Hpy166II	GTNNAC	3 cut(s)	281, 291, 481
Hpy188I	TCNGA	3 cut(s)	120, 186, 307
Hpy188III	TCNNGA	4 cut(s)	139, 222, 472, 533
Hpy8I	GTNNAC	3 cut(s)	281, 291, 481
Hpy99I	CGWCG	2 cut(s)	162, 288
HpyAV	CCTTC	3 cut(s)	142, 344, 623
HpyCH4III	ACNGT	6 cut(s)	63, 278, 288, 295, 478, 568
HpyCH4IV	ACGT	1 cut(s)	540
HpyCH4V	TGCA	2 cut(s)	406, 623
HpyF10VI	GCNNNNNNNGC	5 cut(s)	15, 445, 648, 700, 729
HpyF3I	CTNAG	3 cut(s)	304, 699, 704
HpySE526I	ACGT	1 cut(s)	540
Hsp92I	GRCGYC	1 cut(s)	56
Hsp92II	CATG	6 cut(s)	116, 131, 370, 668, 719, 775
HspAI	GCGC	1 cut(s)	713
KflI	GGGWCCC	1 cut(s)	67
Ksp22I	TGATCA	3 cut(s)	120, 181, 607
Kzo9I	GATC	3 cut(s)	120, 181, 607
LmnI	GCTCC	2 cut(s)	656, 691
LweI	GCATC	2 cut(s)	298, 610
MaeI	CTAG	1 cut(s)	89
MaeII	ACGT	1 cut(s)	540
MaeIII	GTNAC	2 cut(s)	57, 472
MalI	GATC	3 cut(s)	122, 183, 609
MboI	GATC	3 cut(s)	120, 181, 607
MboII	GAAGA	3 cut(s)	117, 120, 127
MhlI	GDGCHC	2 cut(s)	11, 441
MluCI	AATT	1 cut(s)	255
MlyI	GAGTC	1 cut(s)	715
MmeI	TCCRAC	4 cut(s)	143, 530, 669, 740
MnlI	CCTC	5 cut(s)	21, 71, 244, 318, 537
MseI	TTAA	1 cut(s)	203
MspI	CCGG	1 cut(s)	441
MspR9I	CCNGG	3 cut(s)	20, 441, 744
MvaI	CCWGG	2 cut(s)	20, 744
MwoI	GCNNNNNNNGC	5 cut(s)	15, 445, 648, 700, 729
NciI	CCSGG	1 cut(s)	441
NcoI	CCATGG	1 cut(s)	366
NdeII	GATC	3 cut(s)	120, 181, 607
NlaIII	CATG	6 cut(s)	116, 131, 370, 668, 719, 775
NlaIV	GGNNCC	3 cut(s)	68, 69, 297
NmeAIII	GCCGAG	1 cut(s)	460
NmuCI	GTSAC	2 cut(s)	57, 472
NsbI	TGCGCA	1 cut(s)	714
NspI	RCATGY	3 cut(s)	116, 131, 719
PaeI	GCATGC	1 cut(s)	719
PaqCI	CACCTGC	1 cut(s)	737
PfeI	GAWTC	2 cut(s)	190, 560
PflMI	CCANNNNNTGG	2 cut(s)	205, 688
PleI	GAGTC	1 cut(s)	714
PpsI	GAGTC	1 cut(s)	714
PpuMI	RGGWCCY	1 cut(s)	67
Psp5II	RGGWCCY	1 cut(s)	67
Psp6I	CCWGG	2 cut(s)	18, 742
PspFI	CCCAGC	2 cut(s)	51, 797
PspGI	CCWGG	2 cut(s)	18, 742
PspN4I	GGNNCC	3 cut(s)	68, 69, 297
PspPI	GGNCC	3 cut(s)	22, 67, 295
PspPPI	RGGWCCY	1 cut(s)	67
SaqAI	TTAA	1 cut(s)	203
Sau3AI	GATC	3 cut(s)	120, 181, 607
Sau96I	GGNCC	3 cut(s)	22, 67, 295
SchI	GAGTC	1 cut(s)	715
ScrFI	CCNGG	3 cut(s)	20, 441, 744
SduI	GDGCHC	2 cut(s)	11, 441
SfaNI	GCATC	2 cut(s)	298, 610
SinI	GGWCC	2 cut(s)	67, 295
SphI	GCATGC	1 cut(s)	719
Sse9I	AATT	1 cut(s)	255
SsiI	CCGC	1 cut(s)	740
SspMI	CTAG	1 cut(s)	89
StyD4I	CCNGG	3 cut(s)	18, 439, 742
StyI	CCWWGG	1 cut(s)	366
TaaI	ACNGT	6 cut(s)	63, 278, 288, 295, 478, 568
TaiI	ACGT	1 cut(s)	543
TaqI	TCGA	2 cut(s)	5, 252
TasI	AATT	1 cut(s)	255
TfiI	GAWTC	2 cut(s)	190, 560
Tru1I	TTAA	1 cut(s)	203
Tru9I	TTAA	1 cut(s)	203
TscAI	CASTG	2 cut(s)	68, 689
TseFI	GTSAC	2 cut(s)	57, 472
Tsp45I	GTSAC	2 cut(s)	57, 472
TspDTI	ATGAA	2 cut(s)	230, 653
TspRI	CASTG	2 cut(s)	68, 689
Van91I	CCANNNNNTGG	2 cut(s)	205, 688
VpaK11BI	GGWCC	2 cut(s)	67, 295
XceI	RCATGY	3 cut(s)	116, 131, 719
XcmI	CCANNNNNNNNNTGG	1 cut(s)	202
XspI	CTAG	1 cut(s)	89

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.